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BioLiP
Download all results in tab-seperated text for 29 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5scd:A (2.041) BS01 FBP 2.7.1.40 GO:0000287 ... P30613 35290845
    2 5scd:A (2.041) BS02 OXL 2.7.1.40 GO:0000287 ... P30613 35290845
    3 5scd:A (2.041) BS03 MG 2.7.1.40 GO:0000287 ... P30613 35290845
    4 5scd:B (2.041) BS01 FBP 2.7.1.40 GO:0000287 ... P30613 35290845
    5 5scd:B (2.041) BS02 OXL 2.7.1.40 GO:0000287 ... P30613 35290845
    6 5scd:B (2.041) BS03 I8U 2.7.1.40 GO:0000287 ... P30613 35290845
    7 5scd:B (2.041) BS04 MG 2.7.1.40 GO:0000287 ... P30613 35290845
    8 5scd:C (2.041) BS01 FBP 2.7.1.40 GO:0000287 ... P30613 35290845
    9 5scd:C (2.041) BS02 OXL 2.7.1.40 GO:0000287 ... P30613 35290845
    10 5scd:C (2.041) BS03 I8U 2.7.1.40 GO:0000287 ... P30613 35290845
    11 5scd:C (2.041) BS04 MG 2.7.1.40 GO:0000287 ... P30613 35290845
    12 5scd:D (2.041) BS01 FBP 2.7.1.40 GO:0000287 ... P30613 35290845
    13 5scd:D (2.041) BS02 OXL 2.7.1.40 GO:0000287 ... P30613 35290845
    14 5scd:D (2.041) BS03 MG 2.7.1.40 GO:0000287 ... P30613 35290845
    15 5scd:E (2.041) BS01 FBP 2.7.1.40 GO:0000287 ... P30613 35290845
    16 5scd:E (2.041) BS02 OXL 2.7.1.40 GO:0000287 ... P30613 35290845
    17 5scd:E (2.041) BS03 I8U 2.7.1.40 GO:0000287 ... P30613 35290845
    18 5scd:E (2.041) BS04 MG 2.7.1.40 GO:0000287 ... P30613 35290845
    19 5scd:F (2.041) BS01 FBP 2.7.1.40 GO:0000287 ... P30613 35290845
    20 5scd:F (2.041) BS02 OXL 2.7.1.40 GO:0000287 ... P30613 35290845
    21 5scd:F (2.041) BS03 I8U 2.7.1.40 GO:0000287 ... P30613 35290845
    22 5scd:F (2.041) BS04 MG 2.7.1.40 GO:0000287 ... P30613 35290845
    23 5scd:G (2.041) BS01 FBP 2.7.1.40 GO:0000287 ... P30613 35290845
    24 5scd:G (2.041) BS02 OXL 2.7.1.40 GO:0000287 ... P30613 35290845
    25 5scd:G (2.041) BS03 I8U 2.7.1.40 GO:0000287 ... P30613 35290845
    26 5scd:G (2.041) BS04 MG 2.7.1.40 GO:0000287 ... P30613 35290845
    27 5scd:H (2.041) BS01 FBP 2.7.1.40 GO:0000287 ... P30613 35290845
    28 5scd:H (2.041) BS02 OXL 2.7.1.40 GO:0000287 ... P30613 35290845
    29 5scd:H (2.041) BS03 MG 2.7.1.40 GO:0000287 ... P30613 35290845
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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