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BioLiP
Download all results in tab-seperated text for 62 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5oql:0 (3.2) BS01 rna ? GO:0000462 ... G0S5F1 28967883
    2 5oql:A (3.2) BS01 rna ? GO:0000028 ... G0SF93 28967883
    3 5oql:A (3.2) BS02 rna ? GO:0000028 ... G0SF93 28967883
    4 5oql:B (3.2) BS01 rna ? GO:0005634 ... G0SDW0 28967883
    5 5oql:B (3.2) BS02 rna ? GO:0005634 ... G0SDW0 28967883
    6 5oql:C (3.2) BS01 rna ? GO:0000462 ... G0S4H3 28967883
    7 5oql:D (3.2) BS01 rna ? GO:0000462 ... G0SCT7 28967883
    8 5oql:E (3.2) BS01 rna ? GO:0000462 ... G0S387 28967883
    9 5oql:E (3.2) BS02 rna ? GO:0000462 ... G0S387 28967883
    10 5oql:F (3.2) BS01 rna ? GO:0000462 ... G0RZ99 28967883
    11 5oql:F (3.2) BS02 rna ? GO:0000462 ... G0RZ99 28967883
    12 5oql:G (3.2) BS01 rna ? GO:0000462 ... G0S5L1 28967883
    13 5oql:G (3.2) BS02 rna ? GO:0000462 ... G0S5L1 28967883
    14 5oql:H (3.2) BS01 rna ? GO:0005634 ... G0SF32 28967883
    15 5oql:H (3.2) BS02 rna ? GO:0005634 ... G0SF32 28967883
    16 5oql:J (3.2) BS01 rna ? GO:0000472 ... G0SG95 28967883
    17 5oql:K (3.2) BS01 rna ? GO:0005634 ... G0S8Y4 28967883
    18 5oql:M (3.2) BS01 rna ? GO:0003723 ... G0SCS8 28967883
    19 5oql:M (3.2) BS02 rna ? GO:0003723 ... G0SCS8 28967883
    20 5oql:N (3.2) BS01 rna ? GO:0005730 ... G0SBN9 28967883
    21 5oql:N (3.2) BS02 rna ? GO:0005730 ... G0SBN9 28967883
    22 5oql:O (3.2) BS01 rna ? GO:0006364 ... G0S872 28967883
    23 5oql:O (3.2) BS02 rna ? GO:0006364 ... G0S872 28967883
    24 5oql:P (3.2) BS01 rna ? GO:0004540 ... G0SE30 28967883
    25 5oql:P (3.2) BS02 rna ? GO:0004540 ... G0SE30 28967883
    26 5oql:P (3.2) BS03 ZN ? GO:0004540 ... G0SE30 28967883
    27 5oql:Q (3.2) BS01 rna ? GO:0000470 ... G0S7X0 28967883
    28 5oql:S (3.2) BS01 rna ? GO:0000494 ... G0SGY2 28967883
    29 5oql:T (3.2) BS01 rna ? GO:0030515 ... G0S2U4 28967883
    30 5oql:T (3.2) BS02 rna ? GO:0030515 ... G0S2U4 28967883
    31 5oql:U (3.2) BS01 rna ? GO:0005634 ... G0RYF6 28967883
    32 5oql:U (3.2) BS02 rna ? GO:0005634 ... G0RYF6 28967883
    33 5oql:V (3.2) BS01 rna ? GO:0000398 ... G0SGM0 28967883
    34 5oql:V (3.2) BS02 rna ? GO:0000398 ... G0SGM0 28967883
    35 5oql:W (3.2) BS01 rna ? GO:0000398 ... G0SGM0 28967883
    36 5oql:X (3.2) BS01 rna ? GO:0005634 ... G0SG51 28967883
    37 5oql:Z (3.2) BS01 rna ? GO:0000462 ... G0S445 28967883
    38 5oql:Z (3.2) BS02 rna ? GO:0000462 ... G0S445 28967883
    39 5oql:a (3.2) BS01 rna ? GO:0003723 ... G0SDL4 28967883
    40 5oql:a (3.2) BS02 rna ? GO:0003723 ... G0SDL4 28967883
    41 5oql:b (3.2) BS01 rna ? GO:0005730 ... G0SE90 28967883
    42 5oql:c (3.2) BS01 rna ? GO:0005634 ... G0S9I7 28967883
    43 5oql:d (3.2) BS01 rna ? GO:0000462 ... G0RY94 28967883
    44 5oql:d (3.2) BS02 rna ? GO:0000462 ... G0RY94 28967883
    45 5oql:e (3.2) BS01 rna ? GO:0005730 ... G0SAY9 28967883
    46 5oql:g (3.2) BS01 rna ? GO:0003676 ... G0S3V7 28967883
    47 5oql:k (3.2) BS01 rna ? GO:0003723 ... G0S4E3 28967883
    48 5oql:k (3.2) BS02 rna ? GO:0003723 ... G0S4E3 28967883
    49 5oql:l (3.2) BS01 rna ? GO:0003735 ... G0S7T8 28967883
    50 5oql:m (3.2) BS01 rna ? GO:0003723 ... G0S1A6 28967883
    51 5oql:n (3.2) BS01 rna ? GO:0000028 ... G0S1Z0 28967883
    52 5oql:o (3.2) BS01 rna ? GO:0003735 ... G0RY43 28967883
    53 5oql:q (3.2) BS01 rna ? GO:0000462 ... G0RY45 28967883
    54 5oql:r (3.2) BS01 rna ? GO:0003723 ... G0S0Z4 28967883
    55 5oql:s (3.2) BS01 rna ? GO:0003735 ... G0RZM9 28967883
    56 5oql:t (3.2) BS01 rna ? GO:0000028 ... G0SFL1 28967883
    57 5oql:u (3.2) BS01 rna ? GO:0000462 ... G0SBR7 28967883
    58 5oql:v (3.2) BS01 rna ? GO:0003735 ... G0SF00 28967883
    59 5oql:w (3.2) BS01 rna ? GO:0003735 ... G0SHI0 28967883
    60 5oql:x (3.2) BS01 rna ? GO:0003735 ... G0RY17 28967883
    61 5oql:y (3.2) BS01 rna ? GO:0003735 ... P0CU28 28967883
    62 5oql:z (3.2) BS01 rna ? GO:0000028 ... G0S9M9 28967883
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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