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BioLiP
Download all results in tab-seperated text for 39 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5odq:A (2.15) BS01 FAD 1.8.-.- GO:0000166 ... A0A2D0TCB9 28818947
    2 5odq:A (2.15) BS02 SF4 1.8.-.- GO:0000166 ... A0A2D0TCB9 28818947
    3 5odq:A (2.15) BS03 SF4 1.8.-.- GO:0000166 ... A0A2D0TCB9 28818947
    4 5odq:A (2.15) BS04 SF4 1.8.-.- GO:0000166 ... A0A2D0TCB9 28818947
    5 5odq:A (2.15) BS05 SF4 1.8.-.- GO:0000166 ... A0A2D0TCB9 28818947
    6 5odq:A (2.15) BS06 SF4 1.8.-.- GO:0000166 ... A0A2D0TCB9 28818947
    7 5odq:A (2.15) BS07 SF4 1.8.-.- GO:0000166 ... A0A2D0TCB9 28818947
    8 5odq:B (2.15) BS01 9S8 1.8.98.1 GO:0015948 ... A0A2D0TCB4 28818947
    9 5odq:B (2.15) BS02 9S8 1.8.98.1 GO:0015948 ... A0A2D0TCB4 28818947
    10 5odq:B (2.15) BS03 9SB 1.8.98.1 GO:0015948 ... A0A2D0TCB4 28818947
    11 5odq:B (2.15) BS04 9SB 1.8.98.1 GO:0015948 ... A0A2D0TCB4 28818947
    12 5odq:C (2.15) BS01 SF4 1.8.98.1 GO:0015948 ... A0A2D0TC97 28818947
    13 5odq:C (2.15) BS02 SF4 1.8.98.1 GO:0015948 ... A0A2D0TC97 28818947
    14 5odq:D (2.15) BS01 FES 1.8.98.1 GO:0046872 ... A0A2D0TC98 28818947
    15 5odq:E (2.15) BS01 SF4 1.12.1.2
    1.12.99.6    		 GO:0016491 ... A0A2D0TC99 28818947
    16 5odq:E (2.15) BS02 SF4 1.12.1.2
    1.12.99.6    		 GO:0016491 ... A0A2D0TC99 28818947
    17 5odq:E (2.15) BS03 SF4 1.12.1.2
    1.12.99.6    		 GO:0016491 ... A0A2D0TC99 28818947
    18 5odq:F (2.15) BS01 NFU 1.12.1.2
    1.12.99.6    		 GO:0008901 ... A0A2D0TCA6 28818947
    19 5odq:F (2.15) BS02 FE 1.12.1.2
    1.12.99.6    		 GO:0008901 ... A0A2D0TCA6 28818947
    20 5odq:G (2.15) BS01 FAD 1.8.-.- GO:0000166 ... A0A2D0TCB9 28818947
    21 5odq:G (2.15) BS02 FE 1.8.-.- GO:0000166 ... A0A2D0TCB9 28818947
    22 5odq:G (2.15) BS03 SF4 1.8.-.- GO:0000166 ... A0A2D0TCB9 28818947
    23 5odq:G (2.15) BS04 SF4 1.8.-.- GO:0000166 ... A0A2D0TCB9 28818947
    24 5odq:G (2.15) BS05 SF4 1.8.-.- GO:0000166 ... A0A2D0TCB9 28818947
    25 5odq:G (2.15) BS06 SF4 1.8.-.- GO:0000166 ... A0A2D0TCB9 28818947
    26 5odq:G (2.15) BS07 SF4 1.8.-.- GO:0000166 ... A0A2D0TCB9 28818947
    27 5odq:G (2.15) BS08 SF4 1.8.-.- GO:0000166 ... A0A2D0TCB9 28818947
    28 5odq:H (2.15) BS01 9S8 1.8.98.1 GO:0015948 ... A0A2D0TCB4 28818947
    29 5odq:H (2.15) BS02 9S8 1.8.98.1 GO:0015948 ... A0A2D0TCB4 28818947
    30 5odq:H (2.15) BS03 9SB 1.8.98.1 GO:0015948 ... A0A2D0TCB4 28818947
    31 5odq:H (2.15) BS04 9SB 1.8.98.1 GO:0015948 ... A0A2D0TCB4 28818947
    32 5odq:I (2.15) BS01 SF4 1.8.98.1 GO:0015948 ... A0A2D0TC97 28818947
    33 5odq:I (2.15) BS02 SF4 1.8.98.1 GO:0015948 ... A0A2D0TC97 28818947
    34 5odq:J (2.15) BS01 FES 1.8.98.1 GO:0046872 ... A0A2D0TC98 28818947
    35 5odq:K (2.15) BS01 SF4 1.12.1.2
    1.12.99.6    		 GO:0016491 ... A0A2D0TC99 28818947
    36 5odq:K (2.15) BS02 SF4 1.12.1.2
    1.12.99.6    		 GO:0016491 ... A0A2D0TC99 28818947
    37 5odq:K (2.15) BS03 SF4 1.12.1.2
    1.12.99.6    		 GO:0016491 ... A0A2D0TC99 28818947
    38 5odq:L (2.15) BS01 NFU 1.12.1.2
    1.12.99.6    		 GO:0008901 ... A0A2D0TCA6 28818947
    39 5odq:L (2.15) BS02 FE 1.12.1.2
    1.12.99.6    		 GO:0008901 ... A0A2D0TCA6 28818947
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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