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BioLiP
Download all results in tab-seperated text for 74 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5o61:BB (3.31) BS01 rna ? N/A A0QR10 28683309
    2 5o61:BB (3.31) BS02 rna ? N/A A0QR10 28683309
    3 5o61:BC (3.31) BS01 rna ? GO:0003676 ... A0QSD7 28683309
    4 5o61:BD (3.31) BS01 rna ? GO:0003723 ... A0QSL7 28683309
    5 5o61:BE (3.31) BS01 rna ? GO:0003723 ... A0QSG6 28683309
    6 5o61:BF (3.31) BS01 rna N/A GO:0003735 ... N/A 28683309
    7 5o61:BG (3.31) BS01 rna ? GO:0000028 ... A0QS97 28683309
    8 5o61:BH (3.31) BS01 rna ? GO:0003735 ... A0QSG3 28683309
    9 5o61:BI (3.31) BS01 rna ? GO:0003723 ... A0QSP9 28683309
    10 5o61:BI (3.31) BS02 rna ? GO:0003723 ... A0QSP9 28683309
    11 5o61:BJ (3.31) BS01 rna ? GO:0000049 ... A0QSD0 28683309
    12 5o61:BK (3.31) BS01 rna ? GO:0003735 ... A0QSL6 28683309
    13 5o61:BL (3.31) BS01 rna ? GO:0000049 ... A0QS96 28683309
    14 5o61:BM (3.31) BS01 rna ? GO:0000049 ... A0QSL5 28683309
    15 5o61:BN (3.31) BS01 rna ? GO:0003735 ... A0QSG2 28683309
    16 5o61:BN (3.31) BS02 ZN ? GO:0003735 ... A0QSG2 28683309
    17 5o61:BO (3.31) BS01 rna ? GO:0003735 ... A0QVQ3 28683309
    18 5o61:BO (3.31) BS02 rna ? GO:0003735 ... A0QVQ3 28683309
    19 5o61:BP (3.31) BS01 rna ? GO:0003735 ... A0QV37 28683309
    20 5o61:BQ (3.31) BS01 rna ? GO:0003735 ... A0QSE0 28683309
    21 5o61:BR (3.31) BS01 rna ? GO:0003735 ... A0R7F7 28683309
    22 5o61:BR (3.31) BS02 ZN ? GO:0003735 ... A0R7F7 28683309
    23 5o61:BS (3.31) BS01 rna ? GO:0000028 ... A0QSD5 28683309
    24 5o61:BT (3.31) BS01 rna ? GO:0003723 ... A0R102 28683309
    25 5o61:BV (3.31) BS01 rna ? GO:0003735 ... A0QVB8 28683309
    26 5o61:C (3.31) BS01 rna ? GO:0002181 ... A0QSD4 28683309
    27 5o61:C (3.31) BS02 rna ? GO:0002181 ... A0QSD4 28683309
    28 5o61:C (3.31) BS03 MG ? GO:0002181 ... A0QSD4 28683309
    29 5o61:D (3.31) BS01 rna ? GO:0003735 ... A0QSD1 28683309
    30 5o61:E (3.31) BS01 rna ? GO:0003735 ... A0QSD2 28683309
    31 5o61:E (3.31) BS02 MG ? GO:0003735 ... A0QSD2 28683309
    32 5o61:F (3.31) BS01 rna ? GO:0000049 ... A0QSG1 28683309
    33 5o61:F (3.31) BS02 rna ? GO:0000049 ... A0QSG1 28683309
    34 5o61:F (3.31) BS03 rna ? GO:0000049 ... A0QSG1 28683309
    35 5o61:F (3.31) BS04 MG ? GO:0000049 ... A0QSG1 28683309
    36 5o61:G (3.31) BS01 rna ? GO:0002181 ... A0QSG4 28683309
    37 5o61:H (3.31) BS01 rna ? GO:0003735 ... A0R7F6 28683309
    38 5o61:I (3.31) BS01 rna ? GO:0003735 ... A0QS62 28683309
    39 5o61:J (3.31) BS01 rna ? GO:0003735 ... A0QS45 28683309
    40 5o61:K (3.31) BS01 rna ? GO:0003729 ... A0QSP8 28683309
    41 5o61:L (3.31) BS01 rna ? GO:0003735 ... A0QSF9 28683309
    42 5o61:L (3.31) BS02 rna ? GO:0003735 ... A0QSF9 28683309
    43 5o61:M (3.31) BS01 rna ? GO:0003735 ... A0QSG8 28683309
    44 5o61:N (3.31) BS01 rna ? GO:0000049 ... A0QSD8 28683309
    45 5o61:N (3.31) BS02 MG ? GO:0000049 ... A0QSD8 28683309
    46 5o61:O (3.31) BS01 rna ? GO:0003735 ... A0QSL9 28683309
    47 5o61:P (3.31) BS01 rna ? GO:0003735 ... A0QSG5 28683309
    48 5o61:P (3.31) BS02 rna ? GO:0003735 ... A0QSG5 28683309
    49 5o61:Q (3.31) BS01 rna ? GO:0003735 ... A0QV42 28683309
    50 5o61:Q (3.31) BS02 rna ? GO:0003735 ... A0QV42 28683309
    51 5o61:R (3.31) BS01 rna ? GO:0000027 ... A0QYU6 28683309
    52 5o61:S (3.31) BS01 rna ? GO:0003723 ... A0R151 28683309
    53 5o61:T (3.31) BS01 rna ? GO:0003735 ... A0QSD6 28683309
    54 5o61:U (3.31) BS01 rna ? GO:0000027 ... A0QSD3 28683309
    55 5o61:V (3.31) BS01 rna ? GO:0003723 ... A0QSG0 28683309
    56 5o61:V (3.31) BS02 MG ? GO:0003723 ... A0QSG0 28683309
    57 5o61:W (3.31) BS01 rna ? GO:0003723 ... A0R3D2 28683309
    58 5o61:W (3.31) BS02 rna ? GO:0003723 ... A0R3D2 28683309
    59 5o61:X (3.31) BS01 rna ? GO:0003735 ... A0R150 28683309
    60 5o61:X (3.31) BS02 rna ? GO:0003735 ... A0R150 28683309
    61 5o61:Y (3.31) BS01 rna ? GO:0003735 ... A0QV03 28683309
    62 5o61:Y (3.31) BS02 ZN ? GO:0003735 ... A0QV03 28683309
    63 5o61:Z (3.31) BS01 rna ? GO:0003735 ... A0QSD9 28683309
    64 5o61:a (3.31) BS01 rna ? GO:0003735 ... A0QSG7 28683309
    65 5o61:a (3.31) BS02 rna ? GO:0003735 ... A0QSG7 28683309
    66 5o61:b (3.31) BS01 rna ? GO:0003735 ... A0R3I9 28683309
    67 5o61:c (3.31) BS01 rna ? GO:0003735 ... A0QS39 28683309
    68 5o61:c (3.31) BS02 ZN ? GO:0003735 ... A0QS39 28683309
    69 5o61:d (3.31) BS01 rna ? GO:0003735 ... A0R7K0 28683309
    70 5o61:e (3.31) BS01 rna ? GO:0003735 ... A0QYU7 28683309
    71 5o61:f (3.31) BS01 rna ? GO:0003735 ... A0QSL4 28683309
    72 5o61:f (3.31) BS02 ZN ? GO:0003735 ... A0QSL4 28683309
    73 5o61:g (3.31) BS01 rna ? GO:0003735 ... A0R215 28683309
    74 5o61:g (3.31) BS02 ZN ? GO:0003735 ... A0R215 28683309
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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