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BioLiP
Download all results in tab-seperated text for 66 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5np6:0 (3.6) BS01 rna ? GO:0002181 ... P0A7P5 28630923
    2 5np6:1 (3.6) BS01 rna ? GO:0002181 ... P0A7Q1 28630923
    3 5np6:2 (3.6) BS01 rna ? GO:0002181 ... P0A7Q6 28630923
    4 5np6:3 (3.6) BS01 rna ? GO:0003735 ... P0A7J3 28630923
    5 5np6:4 (3.6) BS01 rna ? GO:0002181 ... P0A7M9 28630923
    6 5np6:C (3.6) BS01 rna 5.6.2.2 N/A P23992 28630923
    7 5np6:C (3.6) BS02 rna 5.6.2.2 N/A P23992 28630923
    8 5np6:E (3.6) BS01 rna ? GO:0000028 ... P0A7V0 28630923
    9 5np6:F (3.6) BS01 rna ? GO:0003676 ... P0A7V3 28630923
    10 5np6:F (3.6) BS02 rna ? GO:0003676 ... P0A7V3 28630923
    11 5np6:G (3.6) BS01 rna ? GO:0000028 ... P0A7V8 28630923
    12 5np6:G (3.6) BS02 rna ? GO:0000028 ... P0A7V8 28630923
    13 5np6:H (3.6) BS01 rna ? GO:0000028 ... P0A7W1 28630923
    14 5np6:H (3.6) BS02 rna ? GO:0000028 ... P0A7W1 28630923
    15 5np6:I (3.6) BS01 rna ? GO:0003735 ... P02358 28630923
    16 5np6:J (3.6) BS01 rna ? GO:0003723 ... P02359 28630923
    17 5np6:K (3.6) BS01 rna ? GO:0000028 ... P0A7W7 28630923
    18 5np6:L (3.6) BS01 rna ? GO:0000049 ... P0A7X3 28630923
    19 5np6:L (3.6) BS02 rna ? GO:0000049 ... P0A7X3 28630923
    20 5np6:M (3.6) BS01 rna ? GO:0000049 ... P0A7R5 28630923
    21 5np6:N (3.6) BS01 rna ? GO:0002181 ... P0A7R9 28630923
    22 5np6:O (3.6) BS01 rna ? GO:0000049 ... P0A7S3 28630923
    23 5np6:P (3.6) BS01 rna ? GO:0000049 ... P0A7S9 28630923
    24 5np6:Q (3.6) BS01 rna ? GO:0003735 ... P0AG59 28630923
    25 5np6:R (3.6) BS01 rna ? GO:0000028 ... P0ADZ4 28630923
    26 5np6:R (3.6) BS02 rna ? GO:0000028 ... P0ADZ4 28630923
    27 5np6:S (3.6) BS01 rna ? GO:0000028 ... P0A7T3 28630923
    28 5np6:T (3.6) BS01 rna ? GO:0000028 ... P0AG63 28630923
    29 5np6:U (3.6) BS01 rna ? GO:0003735 ... P0A7T7 28630923
    30 5np6:V (3.6) BS01 rna ? GO:0003723 ... P0A7U3 28630923
    31 5np6:W (3.6) BS01 rna ? GO:0000028 ... P0A7U7 28630923
    32 5np6:X (3.6) BS01 rna ? GO:0000028 ... P68679 28630923
    33 5np6:a (3.6) BS01 rna ? GO:0000027 ... P60422 28630923
    34 5np6:a (3.6) BS02 rna ? GO:0000027 ... P60422 28630923
    35 5np6:b (3.6) BS01 rna ? GO:0000027 ... P60438 28630923
    36 5np6:c (3.6) BS01 rna ? GO:0001070 ... P60723 28630923
    37 5np6:d (3.6) BS01 rna ? GO:0000027 ... P62399 28630923
    38 5np6:d (3.6) BS02 rna ? GO:0000027 ... P62399 28630923
    39 5np6:d (3.6) BS03 rna ? GO:0000027 ... P62399 28630923
    40 5np6:e (3.6) BS01 rna ? GO:0000027 ... P0AG55 28630923
    41 5np6:f (3.6) BS01 rna ? GO:0002181 ... P0A7R1 28630923
    42 5np6:g (3.6) BS01 rna ? GO:0000027 ... P0A7J7 28630923
    43 5np6:h (3.6) BS01 rna ? GO:0002181 ... P0AA10 28630923
    44 5np6:i (3.6) BS01 rna ? GO:0002181 ... P0ADY3 28630923
    45 5np6:i (3.6) BS02 rna ? GO:0002181 ... P0ADY3 28630923
    46 5np6:j (3.6) BS01 rna ? GO:0002181 ... P02413 28630923
    47 5np6:k (3.6) BS01 rna ? GO:0000027 ... P0ADY7 28630923
    48 5np6:k (3.6) BS02 rna ? GO:0000027 ... P0ADY7 28630923
    49 5np6:l (3.6) BS01 rna ? GO:0000027 ... P0AG44 28630923
    50 5np6:m (3.6) BS01 rna ? GO:0002181 ... P0C018 28630923
    51 5np6:m (3.6) BS02 rna ? GO:0002181 ... P0C018 28630923
    52 5np6:n (3.6) BS01 rna ? GO:0000027 ... P0A7K6 28630923
    53 5np6:n (3.6) BS02 rna ? GO:0000027 ... P0A7K6 28630923
    54 5np6:o (3.6) BS01 rna ? GO:0000027 ... P0A7L3 28630923
    55 5np6:p (3.6) BS01 rna ? GO:0002181 ... P0AG48 28630923
    56 5np6:q (3.6) BS01 rna ? GO:0002181 ... P61175 28630923
    57 5np6:r (3.6) BS01 rna ? GO:0000027 ... P0ADZ0 28630923
    58 5np6:s (3.6) BS01 rna ? GO:0000027 ... P60624 28630923
    59 5np6:t (3.6) BS01 rna ? GO:0000027 ... P68919 28630923
    60 5np6:u (3.6) BS01 rna ? GO:0003735 ... P0A7L8 28630923
    61 5np6:u (3.6) BS02 rna ? GO:0003735 ... P0A7L8 28630923
    62 5np6:v (3.6) BS01 rna ? GO:0000027 ... P0A7M2 28630923
    63 5np6:w (3.6) BS01 rna ? GO:0000027 ... P0A7M6 28630923
    64 5np6:x (3.6) BS01 rna ? GO:0000027 ... P0AG51 28630923
    65 5np6:y (3.6) BS01 rna ? GO:0000027 ... P0A7N4 28630923
    66 5np6:z (3.6) BS01 rna ? GO:0000027 ... P0A7N9 28630923
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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