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BioLiP
Download all results in tab-seperated text for 53 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5njt:C (3.8) BS01 rna ? GO:0003676 ... P21465 28468753
    2 5njt:D (3.8) BS01 rna ? GO:0003723 ... P21466 28468753
    3 5njt:E (3.8) BS01 rna ? GO:0003723 ... P21467 28468753
    4 5njt:G (3.8) BS01 rna ? GO:0000028 ... P21469 28468753
    5 5njt:H (3.8) BS01 rna ? GO:0003735 ... P12879 28468753
    6 5njt:I (3.8) BS01 rna ? GO:0003723 ... P21470 28468753
    7 5njt:J (3.8) BS01 rna ? GO:0000049 ... P21471 28468753
    8 5njt:K (3.8) BS01 rna ? GO:0003735 ... P04969 28468753
    9 5njt:L (3.8) BS01 rna ? GO:0000049 ... P21472 28468753
    10 5njt:M (3.8) BS01 rna ? GO:0000049 ... P20282 28468753
    11 5njt:N (3.8) BS01 rna ? GO:0003735 ... P12878 28468753
    12 5njt:O (3.8) BS01 rna ? GO:0003735 ... P21473 28468753
    13 5njt:P (3.8) BS01 rna ? GO:0003735 ... P21474 28468753
    14 5njt:Q (3.8) BS01 rna ? GO:0003735 ... P12874 28468753
    15 5njt:R (3.8) BS01 rna ? GO:0003735 ... P21475 28468753
    16 5njt:S (3.8) BS01 rna ? GO:0003723 ... P21476 28468753
    17 5njt:T (3.8) BS01 rna ? GO:0003723 ... P21477 28468753
    18 5njt:W (3.8) BS01 rna ? GO:0002181 ... P42919 28468753
    19 5njt:W (3.8) BS02 rna ? GO:0002181 ... P42919 28468753
    20 5njt:X (3.8) BS01 rna ? GO:0003735 ... P42920 28468753
    21 5njt:Y (3.8) BS01 rna ? GO:0003735 ... P42921 28468753
    22 5njt:Z (3.8) BS01 rna ? GO:0000049 ... P12877 28468753
    23 5njt:Z (3.8) BS02 rna ? GO:0000049 ... P12877 28468753
    24 5njt:a (3.8) BS01 rna ? GO:0002181 ... P46898 28468753
    25 5njt:b (3.8) BS01 rna ? GO:0003735 ... P42923 28468753
    26 5njt:c (3.8) BS01 rna ? GO:0003729 ... P70974 28468753
    27 5njt:d (3.8) BS01 rna ? GO:0003735 ... P12875 28468753
    28 5njt:d (3.8) BS02 rna ? GO:0003735 ... P12875 28468753
    29 5njt:e (3.8) BS01 rna ? GO:0003735 ... P19946 28468753
    30 5njt:f (3.8) BS01 rna ? GO:0000049 ... P14577 28468753
    31 5njt:f (3.8) BS02 rna ? GO:0000049 ... P14577 28468753
    32 5njt:g (3.8) BS01 rna ? GO:0003735 ... P20277 28468753
    33 5njt:h (3.8) BS01 rna ? GO:0003735 ... P46899 28468753
    34 5njt:h (3.8) BS02 rna ? GO:0003735 ... P46899 28468753
    35 5njt:i (3.8) BS01 rna ? GO:0003735 ... O31742 28468753
    36 5njt:i (3.8) BS02 rna ? GO:0003735 ... O31742 28468753
    37 5njt:j (3.8) BS01 rna ? GO:0000027 ... P55873 28468753
    38 5njt:k (3.8) BS01 rna ? GO:0003723 ... P26908 28468753
    39 5njt:l (3.8) BS01 rna ? GO:0003735 ... P42060 28468753
    40 5njt:m (3.8) BS01 rna ? GO:0000027 ... P42924 28468753
    41 5njt:n (3.8) BS01 rna ? GO:0003677 ... P0CI78 28468753
    42 5njt:o (3.8) BS01 rna ? GO:0003735 ... P05657 28468753
    43 5njt:o (3.8) BS02 rna ? GO:0003735 ... P05657 28468753
    44 5njt:p (3.8) BS01 rna ? GO:0003735 ... O34687 28468753
    45 5njt:q (3.8) BS01 rna ? GO:0003735 ... P56849 28468753
    46 5njt:r (3.8) BS01 rna ? GO:0003735 ... P05647 28468753
    47 5njt:s (3.8) BS01 rna ? GO:0003735 ... P55874 28468753
    48 5njt:t (3.8) BS01 rna ? GO:0003735 ... P20278 28468753
    49 5njt:u (3.8) BS01 rna ? GO:0003735 ... P37807 28468753
    50 5njt:v (3.8) BS01 rna ? GO:0003735 ... P12873 28468753
    51 5njt:w (3.8) BS01 rna ? GO:0003735 ... P19947 28468753
    52 5njt:x (3.8) BS01 rna ? GO:0044238 ... P28368 28468753
    53 5njt:y (3.8) BS01 rna ? GO:0003735 ... Q03223 28468753
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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