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BioLiP
Download all results in tab-seperated text for 83 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5mre:0 (3.75) BS01 rna ? GO:0003735 ... O14464 28154081
    2 5mre:0 (3.75) BS02 ZN ? GO:0003735 ... O14464 28154081
    3 5mre:1 (3.75) BS01 rna ? GO:0003735 ... Q06678 28154081
    4 5mre:11 (3.75) BS01 rna ? N/A P32344 28154081
    5 5mre:11 (3.75) BS02 rna ? N/A P32344 28154081
    6 5mre:2 (3.75) BS01 rna ? GO:0003735 ... P36527 28154081
    7 5mre:22 (3.75) BS01 rna ? N/A P38783 28154081
    8 5mre:3 (3.75) BS01 rna ? GO:0003735 ... P36526 28154081
    9 5mre:33 (3.75) BS01 rna ? GO:0003735 ... P47141 28154081
    10 5mre:4 (3.75) BS01 rna ? GO:0000002 ... Q06090 28154081
    11 5mre:5 (3.75) BS01 rna ? GO:0003725 ... P36516 28154081
    12 5mre:55 (3.75) BS01 rna ? GO:0003735 ... P12686 28154081
    13 5mre:6 (3.75) BS01 rna ? GO:0003735 ... P36528 28154081
    14 5mre:66 (3.75) BS01 rna ? GO:0003735 ... P53292 28154081
    15 5mre:7 (3.75) BS01 rna ? GO:0003735 ... P25642 28154081
    16 5mre:77 (3.75) BS01 rna ? N/A Q03430 28154081
    17 5mre:8 (3.75) BS01 rna ? GO:0003735 ... Q02204 28154081
    18 5mre:9 (3.75) BS01 rna ? GO:0003735 ... P36523 28154081
    19 5mre:AA (3.75) BS01 rna ? GO:0003735 ... Q02950 28154081
    20 5mre:B (3.75) BS01 rna ? GO:0003723 ... P32611 28154081
    21 5mre:B (3.75) BS02 rna ? GO:0003723 ... P32611 28154081
    22 5mre:BB (3.75) BS01 rna ? GO:0003735 ... P32902 28154081
    23 5mre:BB (3.75) BS02 MG ? GO:0003735 ... P32902 28154081
    24 5mre:C (3.75) BS01 rna ? GO:0003735 ... P31334 28154081
    25 5mre:CC (3.75) BS01 rna ? GO:0003735 ... P02381 28154081
    26 5mre:D (3.75) BS01 rna ? GO:0003735 ... P51998 28154081
    27 5mre:DD (3.75) BS01 rna ? GO:0003723 ... P27929 28154081
    28 5mre:E (3.75) BS01 rna ? GO:0003723 ... P36519 28154081
    29 5mre:EE (3.75) BS01 rna ? GO:0003723 ... P33759 28154081
    30 5mre:F (3.75) BS01 rna ? GO:0003735 ... P32904 28154081
    31 5mre:FF (3.75) BS01 rna ? GO:0003735 ... P28778 28154081
    32 5mre:G (3.75) BS01 rna ? N/A P53724 28154081
    33 5mre:GG (3.75) BS01 rna ? GO:0003723 ... P47150 28154081
    34 5mre:H (3.75) BS01 rna ? GO:0003729 ... Q12487 28154081
    35 5mre:HH (3.75) BS01 rna ? GO:0003735 ... Q03799 28154081
    36 5mre:I (3.75) BS01 rna ? GO:0003735 ... P35996 28154081
    37 5mre:I (3.75) BS02 rna ? GO:0003735 ... P35996 28154081
    38 5mre:II (3.75) BS01 rna ? GO:0003735 ... P38120 28154081
    39 5mre:J (3.75) BS01 rna ? GO:0003735 ... P36520 28154081
    40 5mre:JJ (3.75) BS01 rna ? GO:0003735 ... Q03201 28154081
    41 5mre:K (3.75) BS01 rna ? GO:0003735 ... P38064 28154081
    42 5mre:KK (3.75) BS01 rna ? GO:0003735 ... P42847 28154081
    43 5mre:L (3.75) BS01 rna ? GO:0003735 ... P22353 28154081
    44 5mre:LL (3.75) BS01 rna ? GO:0003735 ... P53732 28154081
    45 5mre:M (3.75) BS01 rna ? GO:0003735 ... P25626 28154081
    46 5mre:M (3.75) BS02 rna ? GO:0003735 ... P25626 28154081
    47 5mre:MM (3.75) BS01 rna ? GO:0003676 ... P53937 28154081
    48 5mre:N (3.75) BS01 rna ? GO:0005840 ... P40858 28154081
    49 5mre:NN (3.75) BS01 rna ? GO:0003735 ... P10663 28154081
    50 5mre:O (3.75) BS01 rna ? GO:0003735 ... P53881 28154081
    51 5mre:OO (3.75) BS01 rna ? GO:0003735 ... P21771 28154081
    52 5mre:OO (3.75) BS02 rna ? GO:0003735 ... P21771 28154081
    53 5mre:P (3.75) BS01 rna ? GO:0003735 ... P32387 28154081
    54 5mre:PP (3.75) BS01 rna ? GO:0003735 ... Q02608 28154081
    55 5mre:Q (3.75) BS01 rna ? GO:0003735 ... P36534 28154081
    56 5mre:QQ (3.75) BS01 rna ? GO:0003735 ... Q03246 28154081
    57 5mre:R (3.75) BS01 rna ? GO:0003735 ... P12687 28154081
    58 5mre:RR (3.75) BS01 rna ? GO:0003735 ... P40033 28154081
    59 5mre:S (3.75) BS01 rna ? GO:0003735 ... P36525 28154081
    60 5mre:SS (3.75) BS01 rna ? GO:0003723 ... P53733 28154081
    61 5mre:T (3.75) BS01 rna ? GO:0003735 ... P36517 28154081
    62 5mre:TT (3.75) BS01 rna ? GO:0003735 ... P38175 28154081
    63 5mre:U (3.75) BS01 rna ? GO:0003735 ... P20084 28154081
    64 5mre:UU (3.75) BS01 rna ? GO:0003735 ... P40496 28154081
    65 5mre:V (3.75) BS01 rna ? GO:0003735 ... P36531 28154081
    66 5mre:V (3.75) BS02 rna ? GO:0003735 ... P36531 28154081
    67 5mre:VV (3.75) BS01 rna ? N/A P17558 28154081
    68 5mre:W (3.75) BS01 rna ? GO:0003735 ... P25348 28154081
    69 5mre:W (3.75) BS02 ZN ? GO:0003735 ... P25348 28154081
    70 5mre:WW (3.75) BS01 rna ? GO:0005763 ... Q01163 28154081
    71 5mre:WW (3.75) BS02 GDP ? GO:0005763 ... Q01163 28154081
    72 5mre:X (3.75) BS01 rna ? GO:0003735 ... P36533 28154081
    73 5mre:X (3.75) BS02 rna ? GO:0003735 ... P36533 28154081
    74 5mre:XX (3.75) BS01 rna ? N/A P53305 28154081
    75 5mre:Y (3.75) BS01 rna ? GO:0003735 ... Q04598 28154081
    76 5mre:YY (3.75) BS01 rna ? GO:0003735 ... Q03976 28154081
    77 5mre:Z (3.75) BS01 rna ? GO:0003735 ... P53921 28154081
    78 5mre:ZZ (3.75) BS01 rna ? GO:0003735 ... O75012 28154081
    79 5mre:a (3.75) BS01 rna ? GO:0003735 ... P22354 28154081
    80 5mre:b (3.75) BS01 rna ? GO:0003735 ... P23369 28154081
    81 5mre:c (3.75) BS01 rna ? GO:0003735 ... P14063 28154081
    82 5mre:d (3.75) BS01 rna ? GO:0000002 ... Q06630 28154081
    83 5mre:dd (3.75) BS01 rna N/A N/A N/A 28154081
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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