Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 337 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 2 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5mdx:1 (5.3) BS01 CHL ? GO:0009765 ... P04778 28604725
    2 5mdx:1 (5.3) BS02 CLA ? GO:0009765 ... P04778 28604725
    3 5mdx:1 (5.3) BS03 CLA ? GO:0009765 ... P04778 28604725
    4 5mdx:1 (5.3) BS04 CHL ? GO:0009765 ... P04778 28604725
    5 5mdx:1 (5.3) BS05 CHL ? GO:0009765 ... P04778 28604725
    6 5mdx:1 (5.3) BS06 CHL ? GO:0009765 ... P04778 28604725
    7 5mdx:1 (5.3) BS07 CHL ? GO:0009765 ... P04778 28604725
    8 5mdx:1 (5.3) BS08 CHL ? GO:0009765 ... P04778 28604725
    9 5mdx:1 (5.3) BS09 CLA ? GO:0009765 ... P04778 28604725
    10 5mdx:1 (5.3) BS10 CLA ? GO:0009765 ... P04778 28604725
    11 5mdx:1 (5.3) BS11 CLA ? GO:0009765 ... P04778 28604725
    12 5mdx:1 (5.3) BS12 CLA ? GO:0009765 ... P04778 28604725
    13 5mdx:1 (5.3) BS13 CLA ? GO:0009765 ... P04778 28604725
    14 5mdx:1 (5.3) BS14 CHL ? GO:0009765 ... P04778 28604725
    15 5mdx:1 (5.3) BS15 CHL ? GO:0009765 ... P04778 28604725
    16 5mdx:2 (5.3) BS01 CHL ? GO:0009765 ... P04778 28604725
    17 5mdx:2 (5.3) BS02 CLA ? GO:0009765 ... P04778 28604725
    18 5mdx:2 (5.3) BS03 CLA ? GO:0009765 ... P04778 28604725
    19 5mdx:2 (5.3) BS04 CHL ? GO:0009765 ... P04778 28604725
    20 5mdx:2 (5.3) BS05 CHL ? GO:0009765 ... P04778 28604725
    21 5mdx:2 (5.3) BS06 CHL ? GO:0009765 ... P04778 28604725
    22 5mdx:2 (5.3) BS07 CLA ? GO:0009765 ... P04778 28604725
    23 5mdx:2 (5.3) BS08 CLA ? GO:0009765 ... P04778 28604725
    24 5mdx:2 (5.3) BS09 CLA ? GO:0009765 ... P04778 28604725
    25 5mdx:2 (5.3) BS10 CLA ? GO:0009765 ... P04778 28604725
    26 5mdx:2 (5.3) BS11 CLA ? GO:0009765 ... P04778 28604725
    27 5mdx:2 (5.3) BS12 CLA ? GO:0009765 ... P04778 28604725
    28 5mdx:3 (5.3) BS01 CLA ? GO:0009765 ... P04778 28604725
    29 5mdx:3 (5.3) BS02 CHL ? GO:0009765 ... P04778 28604725
    30 5mdx:3 (5.3) BS03 CLA ? GO:0009765 ... P04778 28604725
    31 5mdx:3 (5.3) BS04 CLA ? GO:0009765 ... P04778 28604725
    32 5mdx:3 (5.3) BS05 CHL ? GO:0009765 ... P04778 28604725
    33 5mdx:3 (5.3) BS06 CHL ? GO:0009765 ... P04778 28604725
    34 5mdx:3 (5.3) BS07 CHL ? GO:0009765 ... P04778 28604725
    35 5mdx:3 (5.3) BS08 CLA ? GO:0009765 ... P04778 28604725
    36 5mdx:3 (5.3) BS09 CLA ? GO:0009765 ... P04778 28604725
    37 5mdx:3 (5.3) BS10 CLA ? GO:0009765 ... P04778 28604725
    38 5mdx:3 (5.3) BS11 CLA ? GO:0009765 ... P04778 28604725
    39 5mdx:3 (5.3) BS12 CLA ? GO:0009765 ... P04778 28604725
    40 5mdx:4 (5.3) BS01 CLA ? GO:0009765 ... Q9LMQ2 28604725
    41 5mdx:4 (5.3) BS02 CHL ? GO:0009765 ... Q9LMQ2 28604725
    42 5mdx:4 (5.3) BS03 CLA ? GO:0009765 ... Q9LMQ2 28604725
    43 5mdx:4 (5.3) BS04 CLA ? GO:0009765 ... Q9LMQ2 28604725
    44 5mdx:4 (5.3) BS05 CLA ? GO:0009765 ... Q9LMQ2 28604725
    45 5mdx:4 (5.3) BS06 CHL ? GO:0009765 ... Q9LMQ2 28604725
    46 5mdx:4 (5.3) BS07 CHL ? GO:0009765 ... Q9LMQ2 28604725
    47 5mdx:4 (5.3) BS08 CHL ? GO:0009765 ... Q9LMQ2 28604725
    48 5mdx:4 (5.3) BS09 CLA ? GO:0009765 ... Q9LMQ2 28604725
    49 5mdx:4 (5.3) BS10 CLA ? GO:0009765 ... Q9LMQ2 28604725
    50 5mdx:5 (5.3) BS01 CHL ? GO:0009765 ... P04778 28604725
    51 5mdx:5 (5.3) BS02 CLA ? GO:0009765 ... P04778 28604725
    52 5mdx:5 (5.3) BS03 CLA ? GO:0009765 ... P04778 28604725
    53 5mdx:5 (5.3) BS04 CHL ? GO:0009765 ... P04778 28604725
    54 5mdx:5 (5.3) BS05 CHL ? GO:0009765 ... P04778 28604725
    55 5mdx:5 (5.3) BS06 CHL ? GO:0009765 ... P04778 28604725
    56 5mdx:5 (5.3) BS07 CHL ? GO:0009765 ... P04778 28604725
    57 5mdx:5 (5.3) BS08 CHL ? GO:0009765 ... P04778 28604725
    58 5mdx:5 (5.3) BS09 CLA ? GO:0009765 ... P04778 28604725
    59 5mdx:5 (5.3) BS10 CLA ? GO:0009765 ... P04778 28604725
    60 5mdx:5 (5.3) BS11 CLA ? GO:0009765 ... P04778 28604725
    61 5mdx:5 (5.3) BS12 CLA ? GO:0009765 ... P04778 28604725
    62 5mdx:5 (5.3) BS13 CLA ? GO:0009765 ... P04778 28604725
    63 5mdx:5 (5.3) BS14 CHL ? GO:0009765 ... P04778 28604725
    64 5mdx:5 (5.3) BS15 CHL ? GO:0009765 ... P04778 28604725
    65 5mdx:6 (5.3) BS01 CHL ? GO:0009765 ... P04778 28604725
    66 5mdx:6 (5.3) BS02 CLA ? GO:0009765 ... P04778 28604725
    67 5mdx:6 (5.3) BS03 CLA ? GO:0009765 ... P04778 28604725
    68 5mdx:6 (5.3) BS04 CHL ? GO:0009765 ... P04778 28604725
    69 5mdx:6 (5.3) BS05 CHL ? GO:0009765 ... P04778 28604725
    70 5mdx:6 (5.3) BS06 CHL ? GO:0009765 ... P04778 28604725
    71 5mdx:6 (5.3) BS07 CLA ? GO:0009765 ... P04778 28604725
    72 5mdx:6 (5.3) BS08 CLA ? GO:0009765 ... P04778 28604725
    73 5mdx:6 (5.3) BS09 CLA ? GO:0009765 ... P04778 28604725
    74 5mdx:6 (5.3) BS10 CLA ? GO:0009765 ... P04778 28604725
    75 5mdx:6 (5.3) BS11 CLA ? GO:0009765 ... P04778 28604725
    76 5mdx:6 (5.3) BS12 CLA ? GO:0009765 ... P04778 28604725
    77 5mdx:7 (5.3) BS01 CLA ? GO:0009765 ... P04778 28604725
    78 5mdx:7 (5.3) BS02 CHL ? GO:0009765 ... P04778 28604725
    79 5mdx:7 (5.3) BS03 CLA ? GO:0009765 ... P04778 28604725
    80 5mdx:7 (5.3) BS04 CLA ? GO:0009765 ... P04778 28604725
    81 5mdx:7 (5.3) BS05 CHL ? GO:0009765 ... P04778 28604725
    82 5mdx:7 (5.3) BS06 CHL ? GO:0009765 ... P04778 28604725
    83 5mdx:7 (5.3) BS07 CHL ? GO:0009765 ... P04778 28604725
    84 5mdx:7 (5.3) BS08 CLA ? GO:0009765 ... P04778 28604725
    85 5mdx:7 (5.3) BS09 CLA ? GO:0009765 ... P04778 28604725
    86 5mdx:7 (5.3) BS10 CLA ? GO:0009765 ... P04778 28604725
    87 5mdx:7 (5.3) BS11 CLA ? GO:0009765 ... P04778 28604725
    88 5mdx:7 (5.3) BS12 CLA ? GO:0009765 ... P04778 28604725
    89 5mdx:8 (5.3) BS01 CLA ? GO:0009765 ... Q9LMQ2 28604725
    90 5mdx:8 (5.3) BS02 CHL ? GO:0009765 ... Q9LMQ2 28604725
    91 5mdx:8 (5.3) BS03 CLA ? GO:0009765 ... Q9LMQ2 28604725
    92 5mdx:8 (5.3) BS04 CLA ? GO:0009765 ... Q9LMQ2 28604725
    93 5mdx:8 (5.3) BS05 CLA ? GO:0009765 ... Q9LMQ2 28604725
    94 5mdx:8 (5.3) BS06 CHL ? GO:0009765 ... Q9LMQ2 28604725
    95 5mdx:8 (5.3) BS07 CHL ? GO:0009765 ... Q9LMQ2 28604725
    96 5mdx:8 (5.3) BS08 CHL ? GO:0009765 ... Q9LMQ2 28604725
    97 5mdx:8 (5.3) BS09 CLA ? GO:0009765 ... Q9LMQ2 28604725
    98 5mdx:8 (5.3) BS10 CLA ? GO:0009765 ... Q9LMQ2 28604725
    99 5mdx:A (5.3) BS01 peptide 1.10.3.9 GO:0003729 ... P83755 28604725
    100 5mdx:A (5.3) BS02 peptide 1.10.3.9 GO:0003729 ... P83755 28604725
    101 5mdx:A (5.3) BS03 FE2 1.10.3.9 GO:0003729 ... P83755 28604725
    102 5mdx:A (5.3) BS04 CLA 1.10.3.9 GO:0003729 ... P83755 28604725
    103 5mdx:A (5.3) BS05 PHO 1.10.3.9 GO:0003729 ... P83755 28604725
    104 5mdx:A (5.3) BS06 CLA 1.10.3.9 GO:0003729 ... P83755 28604725
    105 5mdx:A (5.3) BS07 CLA 1.10.3.9 GO:0003729 ... P83755 28604725
    106 5mdx:A (5.3) BS08 PHO 1.10.3.9 GO:0003729 ... P83755 28604725
    107 5mdx:B (5.3) BS01 CLA ? GO:0003729 ... P56777 28604725
    108 5mdx:B (5.3) BS02 CLA ? GO:0003729 ... P56777 28604725
    109 5mdx:B (5.3) BS03 CLA ? GO:0003729 ... P56777 28604725
    110 5mdx:B (5.3) BS04 CLA ? GO:0003729 ... P56777 28604725
    111 5mdx:B (5.3) BS05 CLA ? GO:0003729 ... P56777 28604725
    112 5mdx:B (5.3) BS06 CLA ? GO:0003729 ... P56777 28604725
    113 5mdx:B (5.3) BS07 CLA ? GO:0003729 ... P56777 28604725
    114 5mdx:B (5.3) BS08 CLA ? GO:0003729 ... P56777 28604725
    115 5mdx:B (5.3) BS09 CLA ? GO:0003729 ... P56777 28604725
    116 5mdx:B (5.3) BS10 CLA ? GO:0003729 ... P56777 28604725
    117 5mdx:B (5.3) BS11 CLA ? GO:0003729 ... P56777 28604725
    118 5mdx:B (5.3) BS12 CLA ? GO:0003729 ... P56777 28604725
    119 5mdx:B (5.3) BS13 CLA ? GO:0003729 ... P56777 28604725
    120 5mdx:B (5.3) BS14 CLA ? GO:0003729 ... P56777 28604725
    121 5mdx:B (5.3) BS15 CLA ? GO:0003729 ... P56777 28604725
    122 5mdx:B (5.3) BS16 CLA ? GO:0003729 ... P56777 28604725
    123 5mdx:C (5.3) BS01 CLA ? GO:0003729 ... P56778 28604725
    124 5mdx:C (5.3) BS02 CLA ? GO:0003729 ... P56778 28604725
    125 5mdx:C (5.3) BS03 CLA ? GO:0003729 ... P56778 28604725
    126 5mdx:C (5.3) BS04 CLA ? GO:0003729 ... P56778 28604725
    127 5mdx:C (5.3) BS05 CLA ? GO:0003729 ... P56778 28604725
    128 5mdx:C (5.3) BS06 CLA ? GO:0003729 ... P56778 28604725
    129 5mdx:C (5.3) BS07 CLA ? GO:0003729 ... P56778 28604725
    130 5mdx:C (5.3) BS08 CLA ? GO:0003729 ... P56778 28604725
    131 5mdx:C (5.3) BS09 CLA ? GO:0003729 ... P56778 28604725
    132 5mdx:C (5.3) BS10 CLA ? GO:0003729 ... P56778 28604725
    133 5mdx:C (5.3) BS11 CLA ? GO:0003729 ... P56778 28604725
    134 5mdx:C (5.3) BS12 CLA ? GO:0003729 ... P56778 28604725
    135 5mdx:C (5.3) BS13 CLA ? GO:0003729 ... P56778 28604725
    136 5mdx:D (5.3) BS01 peptide 1.10.3.9 GO:0003729 ... P56761 28604725
    137 5mdx:D (5.3) BS02 peptide 1.10.3.9 GO:0003729 ... P56761 28604725
    138 5mdx:D (5.3) BS03 FE2 1.10.3.9 GO:0003729 ... P56761 28604725
    139 5mdx:D (5.3) BS04 CLA 1.10.3.9 GO:0003729 ... P56761 28604725
    140 5mdx:D (5.3) BS05 PHO 1.10.3.9 GO:0003729 ... P56761 28604725
    141 5mdx:D (5.3) BS06 CLA 1.10.3.9 GO:0003729 ... P56761 28604725
    142 5mdx:D (5.3) BS07 PHO 1.10.3.9 GO:0003729 ... P56761 28604725
    143 5mdx:D (5.3) BS08 CLA 1.10.3.9 GO:0003729 ... P56761 28604725
    144 5mdx:D (5.3) BS09 CLA 1.10.3.9 GO:0003729 ... P56761 28604725
    145 5mdx:E (5.3) BS01 HEM ? GO:0005506 ... P56779 28604725
    146 5mdx:G (5.3) BS01 CHL ? GO:0009765 ... P04778 28604725
    147 5mdx:G (5.3) BS02 CLA ? GO:0009765 ... P04778 28604725
    148 5mdx:G (5.3) BS03 CLA ? GO:0009765 ... P04778 28604725
    149 5mdx:G (5.3) BS04 CLA ? GO:0009765 ... P04778 28604725
    150 5mdx:G (5.3) BS05 CHL ? GO:0009765 ... P04778 28604725
    151 5mdx:G (5.3) BS06 CHL ? GO:0009765 ... P04778 28604725
    152 5mdx:G (5.3) BS07 CHL ? GO:0009765 ... P04778 28604725
    153 5mdx:G (5.3) BS08 CHL ? GO:0009765 ... P04778 28604725
    154 5mdx:G (5.3) BS09 CLA ? GO:0009765 ... P04778 28604725
    155 5mdx:G (5.3) BS10 CLA ? GO:0009765 ... P04778 28604725
    156 5mdx:G (5.3) BS11 CLA ? GO:0009765 ... P04778 28604725
    157 5mdx:G (5.3) BS12 CLA ? GO:0009765 ... P04778 28604725
    158 5mdx:G (5.3) BS13 CLA ? GO:0009765 ... P04778 28604725
    159 5mdx:H (5.3) BS01 CLA ? GO:0003729 ... P56780 28604725
    160 5mdx:H (5.3) BS02 CLA ? GO:0003729 ... P56780 28604725
    161 5mdx:L (5.3) BS01 peptide ? GO:0005737 ... P60129 28604725
    162 5mdx:L (5.3) BS02 peptide ? GO:0005737 ... P60129 28604725
    163 5mdx:N (5.3) BS01 CHL ? GO:0009765 ... P04778 28604725
    164 5mdx:N (5.3) BS02 CLA ? GO:0009765 ... P04778 28604725
    165 5mdx:N (5.3) BS03 CLA ? GO:0009765 ... P04778 28604725
    166 5mdx:N (5.3) BS04 CLA ? GO:0009765 ... P04778 28604725
    167 5mdx:N (5.3) BS05 CHL ? GO:0009765 ... P04778 28604725
    168 5mdx:N (5.3) BS06 CHL ? GO:0009765 ... P04778 28604725
    169 5mdx:N (5.3) BS07 CHL ? GO:0009765 ... P04778 28604725
    170 5mdx:N (5.3) BS08 CHL ? GO:0009765 ... P04778 28604725
    171 5mdx:N (5.3) BS09 CLA ? GO:0009765 ... P04778 28604725
    172 5mdx:N (5.3) BS10 CLA ? GO:0009765 ... P04778 28604725
    173 5mdx:N (5.3) BS11 CLA ? GO:0009765 ... P04778 28604725
    174 5mdx:N (5.3) BS12 CLA ? GO:0009765 ... P04778 28604725
    175 5mdx:N (5.3) BS13 CLA ? GO:0009765 ... P04778 28604725
    176 5mdx:R (5.3) BS01 CLA ? GO:0009765 ... Q07473 28604725
    177 5mdx:R (5.3) BS02 CLA ? GO:0009765 ... Q07473 28604725
    178 5mdx:R (5.3) BS03 CLA ? GO:0009765 ... Q07473 28604725
    179 5mdx:R (5.3) BS04 CHL ? GO:0009765 ... Q07473 28604725
    180 5mdx:R (5.3) BS05 CHL ? GO:0009765 ... Q07473 28604725
    181 5mdx:R (5.3) BS06 CHL ? GO:0009765 ... Q07473 28604725
    182 5mdx:R (5.3) BS07 CLA ? GO:0009765 ... Q07473 28604725
    183 5mdx:R (5.3) BS08 CLA ? GO:0009765 ... Q07473 28604725
    184 5mdx:R (5.3) BS09 CLA ? GO:0009765 ... Q07473 28604725
    185 5mdx:R (5.3) BS10 CLA ? GO:0009765 ... Q07473 28604725
    186 5mdx:R (5.3) BS11 CLA ? GO:0009765 ... Q07473 28604725
    187 5mdx:R (5.3) BS12 CLA ? GO:0009765 ... Q07473 28604725
    188 5mdx:R (5.3) BS13 CLA ? GO:0009765 ... Q07473 28604725
    189 5mdx:R (5.3) BS14 CHL ? GO:0009765 ... Q07473 28604725
    190 5mdx:S (5.3) BS01 CLA ? GO:0009765 ... Q9XF89 28604725
    191 5mdx:S (5.3) BS02 CHL ? GO:0009765 ... Q9XF89 28604725
    192 5mdx:S (5.3) BS03 CLA ? GO:0009765 ... Q9XF89 28604725
    193 5mdx:S (5.3) BS04 CLA ? GO:0009765 ... Q9XF89 28604725
    194 5mdx:S (5.3) BS05 CLA ? GO:0009765 ... Q9XF89 28604725
    195 5mdx:S (5.3) BS06 CHL ? GO:0009765 ... Q9XF89 28604725
    196 5mdx:S (5.3) BS07 CHL ? GO:0009765 ... Q9XF89 28604725
    197 5mdx:S (5.3) BS08 CLA ? GO:0009765 ... Q9XF89 28604725
    198 5mdx:S (5.3) BS09 CLA ? GO:0009765 ... Q9XF89 28604725
    199 5mdx:S (5.3) BS10 CLA ? GO:0009765 ... Q9XF89 28604725
    200 5mdx:S (5.3) BS11 CLA ? GO:0009765 ... Q9XF89 28604725
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218