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BioLiP
Download all results in tab-seperated text for 73 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5mdv:6 (2.97) BS01 rna ? GO:0072344 ... P36675 27934701
    2 5mdv:6 (2.97) BS02 rna ? GO:0072344 ... P36675 27934701
    3 5mdv:7 (2.97) BS01 rna ? GO:0003747 ... P07012 27934701
    4 5mdv:7 (2.97) BS02 rna ? GO:0003747 ... P07012 27934701
    5 5mdv:7 (2.97) BS03 rna ? GO:0003747 ... P07012 27934701
    6 5mdv:B (2.97) BS01 rna ? GO:0000027 ... P60422 27934701
    7 5mdv:B (2.97) BS02 MG ? GO:0000027 ... P60422 27934701
    8 5mdv:C (2.97) BS01 rna ? GO:0000027 ... P60438 27934701
    9 5mdv:D (2.97) BS01 rna ? GO:0001070 ... P60723 27934701
    10 5mdv:E (2.97) BS01 rna ? GO:0000027 ... P62399 27934701
    11 5mdv:E (2.97) BS02 rna ? GO:0000027 ... P62399 27934701
    12 5mdv:E (2.97) BS03 rna ? GO:0000027 ... P62399 27934701
    13 5mdv:F (2.97) BS01 rna ? GO:0000027 ... P0AG55 27934701
    14 5mdv:G (2.97) BS01 rna ? GO:0002181 ... P0A7R1 27934701
    15 5mdv:H (2.97) BS01 rna ? GO:0002181 ... P0A7J3 27934701
    16 5mdv:I (2.97) BS01 rna ? GO:0000027 ... P0A7J7 27934701
    17 5mdv:J (2.97) BS01 rna ? GO:0002181 ... P0AA10 27934701
    18 5mdv:K (2.97) BS01 rna ? GO:0002181 ... P0ADY3 27934701
    19 5mdv:K (2.97) BS02 rna ? GO:0002181 ... P0ADY3 27934701
    20 5mdv:L (2.97) BS01 rna ? GO:0002181 ... P02413 27934701
    21 5mdv:M (2.97) BS01 rna ? GO:0000027 ... P0ADY7 27934701
    22 5mdv:M (2.97) BS02 rna ? GO:0000027 ... P0ADY7 27934701
    23 5mdv:N (2.97) BS01 rna ? GO:0000027 ... P0AG44 27934701
    24 5mdv:O (2.97) BS01 rna ? GO:0002181 ... P0C018 27934701
    25 5mdv:O (2.97) BS02 rna ? GO:0002181 ... P0C018 27934701
    26 5mdv:P (2.97) BS01 rna ? GO:0000027 ... P0A7K6 27934701
    27 5mdv:P (2.97) BS02 rna ? GO:0000027 ... P0A7K6 27934701
    28 5mdv:Q (2.97) BS01 rna ? GO:0000027 ... P0A7L3 27934701
    29 5mdv:R (2.97) BS01 rna ? GO:0002181 ... P0AG48 27934701
    30 5mdv:S (2.97) BS01 rna ? GO:0002181 ... P61175 27934701
    31 5mdv:T (2.97) BS01 rna ? GO:0000027 ... P0ADZ0 27934701
    32 5mdv:U (2.97) BS01 rna ? GO:0000027 ... P60624 27934701
    33 5mdv:V (2.97) BS01 rna ? GO:0000027 ... P68919 27934701
    34 5mdv:V (2.97) BS02 rna ? GO:0000027 ... P68919 27934701
    35 5mdv:W (2.97) BS01 rna ? GO:0000027 ... P0A7L8 27934701
    36 5mdv:W (2.97) BS02 rna ? GO:0000027 ... P0A7L8 27934701
    37 5mdv:X (2.97) BS01 rna ? GO:0000027 ... P0A7M2 27934701
    38 5mdv:Y (2.97) BS01 rna ? GO:0000027 ... P0A7M6 27934701
    39 5mdv:Z (2.97) BS01 rna ? GO:0000027 ... P0AG51 27934701
    40 5mdv:Z (2.97) BS02 rna ? GO:0000027 ... P0AG51 27934701
    41 5mdv:a (2.97) BS01 rna ? GO:0002181 ... P0A7M9 27934701
    42 5mdv:a (2.97) BS02 ZN ? GO:0002181 ... P0A7M9 27934701
    43 5mdv:b (2.97) BS01 rna ? GO:0000027 ... P0A7N4 27934701
    44 5mdv:c (2.97) BS01 rna ? GO:0000027 ... P0A7N9 27934701
    45 5mdv:d (2.97) BS01 rna ? GO:0002181 ... P0A7P5 27934701
    46 5mdv:e (2.97) BS01 rna ? GO:0002181 ... P0A7Q1 27934701
    47 5mdv:f (2.97) BS01 rna ? GO:0002181 ... P0A7Q6 27934701
    48 5mdv:f (2.97) BS02 ZN ? GO:0002181 ... P0A7Q6 27934701
    49 5mdv:g (2.97) BS01 rna ? GO:0000028 ... P0A7V0 27934701
    50 5mdv:h (2.97) BS01 rna ? GO:0000028 ... P0A7V3 27934701
    51 5mdv:i (2.97) BS01 rna ? GO:0000028 ... P0A7V8 27934701
    52 5mdv:i (2.97) BS02 MG ? GO:0000028 ... P0A7V8 27934701
    53 5mdv:j (2.97) BS01 rna ? GO:0000028 ... P0A7W1 27934701
    54 5mdv:k (2.97) BS01 rna ? GO:0002181 ... P02358 27934701
    55 5mdv:l (2.97) BS01 rna ? GO:0000028 ... P02359 27934701
    56 5mdv:m (2.97) BS01 rna ? GO:0000028 ... P0A7W7 27934701
    57 5mdv:n (2.97) BS01 rna ? GO:0000049 ... P0A7X3 27934701
    58 5mdv:n (2.97) BS02 rna ? GO:0000049 ... P0A7X3 27934701
    59 5mdv:o (2.97) BS01 rna ? GO:0000049 ... P0A7R5 27934701
    60 5mdv:p (2.97) BS01 rna ? GO:0002181 ... P0A7R9 27934701
    61 5mdv:q (2.97) BS01 rna ? GO:0000049 ... P0A7S3 27934701
    62 5mdv:r (2.97) BS01 rna ? GO:0000049 ... P0A7S9 27934701
    63 5mdv:r (2.97) BS02 rna ? GO:0000049 ... P0A7S9 27934701
    64 5mdv:r (2.97) BS03 MG ? GO:0000049 ... P0A7S9 27934701
    65 5mdv:s (2.97) BS01 rna ? GO:0000028 ... P0AG59 27934701
    66 5mdv:t (2.97) BS01 rna ? GO:0000028 ... P0ADZ4 27934701
    67 5mdv:t (2.97) BS02 rna ? GO:0000028 ... P0ADZ4 27934701
    68 5mdv:u (2.97) BS01 rna ? GO:0000028 ... P0A7T3 27934701
    69 5mdv:v (2.97) BS01 rna ? GO:0000028 ... P0AG63 27934701
    70 5mdv:w (2.97) BS01 rna ? GO:0002181 ... P0A7T7 27934701
    71 5mdv:x (2.97) BS01 rna ? GO:0000028 ... P0A7U3 27934701
    72 5mdv:y (2.97) BS01 rna ? GO:0000028 ... P0A7U7 27934701
    73 5mdv:z (2.97) BS01 rna ? GO:0000028 ... P68679 27934701
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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