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BioLiP
Download all results in tab-seperated text for 108 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5lzz:A (3.47) BS01 rna ? GO:0002181 ... G1TT27 27863242
    2 5lzz:A (3.47) BS02 rna ? GO:0002181 ... G1TT27 27863242
    3 5lzz:AA (3.47) BS01 rna N/A GO:0003735 ... N/A 27863242
    4 5lzz:B (3.47) BS01 rna ? GO:0003723 ... G1TL06 27863242
    5 5lzz:BB (3.47) BS01 rna ? GO:0003735 ... G1SS70 27863242
    6 5lzz:C (3.47) BS01 rna ? GO:0003723 ... G1SVW5 27863242
    7 5lzz:C (3.47) BS02 rna ? GO:0003723 ... G1SVW5 27863242
    8 5lzz:CC (3.47) BS01 rna N/A GO:0003723 ... N/A 27863242
    9 5lzz:D (3.47) BS01 rna ? GO:0000027 ... P19949 27863242
    10 5lzz:D (3.47) BS02 rna ? GO:0000027 ... P19949 27863242
    11 5lzz:DD (3.47) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 27863242
    12 5lzz:E (3.47) BS01 rna ? GO:0000027 ... G1SKF7 27863242
    13 5lzz:EE (3.47) BS01 rna N/A GO:0003723 ... N/A 27863242
    14 5lzz:F (3.47) BS01 rna ? GO:0000463 ... G1TUB1 27863242
    15 5lzz:F (3.47) BS02 rna ? GO:0000463 ... G1TUB1 27863242
    16 5lzz:FF (3.47) BS01 rna ? GO:0000028 ... G1TFM5 27863242
    17 5lzz:FF (3.47) BS02 rna ? GO:0000028 ... G1TFM5 27863242
    18 5lzz:G (3.47) BS01 rna ? GO:0000470 ... G1STW0 27863242
    19 5lzz:G (3.47) BS02 rna ? GO:0000470 ... G1STW0 27863242
    20 5lzz:GG (3.47) BS01 rna ? GO:0000082 ... G1TM55 27863242
    21 5lzz:H (3.47) BS01 rna ? GO:0002181 ... G1SWI6 27863242
    22 5lzz:HH (3.47) BS01 rna ? GO:0003735 ... G1SVB0 27863242
    23 5lzz:I (3.47) BS01 rna ? GO:0000027 ... B7NZQ2 27863242
    24 5lzz:I (3.47) BS02 rna ? GO:0000027 ... B7NZQ2 27863242
    25 5lzz:II (3.47) BS01 rna ? GO:0000462 ... G1TJW1 27863242
    26 5lzz:II (3.47) BS02 rna ? GO:0000462 ... G1TJW1 27863242
    27 5lzz:J (3.47) BS01 rna ? GO:0003723 ... G1TUB8 27863242
    28 5lzz:J (3.47) BS02 rna ? GO:0003723 ... G1TUB8 27863242
    29 5lzz:J (3.47) BS03 rna ? GO:0003723 ... G1TUB8 27863242
    30 5lzz:JJ (3.47) BS01 rna ? GO:0003723 ... B7NZS8 27863242
    31 5lzz:KK (3.47) BS01 rna ? GO:0003723 ... G1TPV3 27863242
    32 5lzz:L (3.47) BS01 rna N/A GO:0003735 ... N/A 27863242
    33 5lzz:L (3.47) BS02 rna N/A GO:0003735 ... N/A 27863242
    34 5lzz:LL (3.47) BS01 rna ? GO:0003735 ... G1TRM4 27863242
    35 5lzz:M (3.47) BS01 rna ? GO:0003723 ... G1SZ12 27863242
    36 5lzz:MM (3.47) BS01 rna ? GO:0003735 ... G1SFR8 27863242
    37 5lzz:N (3.47) BS01 rna N/A GO:0003735 ... N/A 27863242
    38 5lzz:N (3.47) BS02 rna N/A GO:0003735 ... N/A 27863242
    39 5lzz:NN (3.47) BS01 rna ? GO:0003735 ... G1SP51 27863242
    40 5lzz:O (3.47) BS01 rna N/A GO:0003735 ... N/A 27863242
    41 5lzz:OO (3.47) BS01 rna ? GO:0000028 ... G1T1F0 27863242
    42 5lzz:P (3.47) BS01 rna ? GO:0002181 ... G1SCJ6 27863242
    43 5lzz:P (3.47) BS02 rna ? GO:0002181 ... G1SCJ6 27863242
    44 5lzz:PP (3.47) BS01 rna ? GO:0000028 ... G1U0Q2 27863242
    45 5lzz:Q (3.47) BS01 rna N/A GO:0003735 ... N/A 27863242
    46 5lzz:QQ (3.47) BS01 rna ? GO:0000462 ... G1SGX4 27863242
    47 5lzz:R (3.47) BS01 rna N/A GO:0003723 ... N/A 27863242
    48 5lzz:R (3.47) BS02 rna N/A GO:0003723 ... N/A 27863242
    49 5lzz:RR (3.47) BS01 rna ? GO:0003735 ... G1TU13 27863242
    50 5lzz:S (3.47) BS01 rna N/A GO:0003735 ... N/A 27863242
    51 5lzz:S (3.47) BS02 rna N/A GO:0003735 ... N/A 27863242
    52 5lzz:SS (3.47) BS01 rna ? GO:0003676 ... G1TPG3 27863242
    53 5lzz:T (3.47) BS01 rna ? GO:0003735 ... G1SHQ2 27863242
    54 5lzz:T (3.47) BS02 rna ? GO:0003735 ... G1SHQ2 27863242
    55 5lzz:TT (3.47) BS01 rna ? GO:0000028 ... G1TN62 27863242
    56 5lzz:U (3.47) BS01 rna N/A GO:0003735 ... N/A 27863242
    57 5lzz:UU (3.47) BS01 rna ? GO:0003723 ... G1SIZ2 27863242
    58 5lzz:V (3.47) BS01 rna ? GO:0000122 ... G1T6D1 27863242
    59 5lzz:W (3.47) BS01 rna ? GO:0000027 ... G1SE28 27863242
    60 5lzz:WW (3.47) BS01 rna ? GO:0003735 ... G1TG89 27863242
    61 5lzz:X (3.47) BS01 rna ? GO:0000027 ... G1SE76 27863242
    62 5lzz:X (3.47) BS02 rna ? GO:0000027 ... G1SE76 27863242
    63 5lzz:XX (3.47) BS01 rna N/A GO:0003735 ... N/A 27863242
    64 5lzz:Y (3.47) BS01 rna ? GO:0002181 ... G1SQH0 27863242
    65 5lzz:Y (3.47) BS02 rna ? GO:0002181 ... G1SQH0 27863242
    66 5lzz:YY (3.47) BS01 rna ? GO:0003735 ... G1T3D8 27863242
    67 5lzz:Z (3.47) BS01 rna ? GO:0003735 ... G1TXF6 27863242
    68 5lzz:ZZ (3.47) BS01 rna ? GO:0003735 ... G1TDB3 27863242
    69 5lzz:a (3.47) BS01 rna ? GO:0003735 ... G1SNY0 27863242
    70 5lzz:aa (3.47) BS01 rna N/A GO:0003735 ... N/A 27863242
    71 5lzz:aa (3.47) BS02 ZN N/A GO:0003735 ... N/A 27863242
    72 5lzz:b (3.47) BS01 rna ? GO:0002181 ... G1SGR6 27863242
    73 5lzz:bb (3.47) BS01 rna ? GO:0000028 ... G1TZ76 27863242
    74 5lzz:c (3.47) BS01 rna ? GO:0002181 ... G1TDL2 27863242
    75 5lzz:cc (3.47) BS01 rna ? GO:0000028 ... G1TIB4 27863242
    76 5lzz:d (3.47) BS01 rna ? GO:0002181 ... G1SHG0 27863242
    77 5lzz:dd (3.47) BS01 rna ? GO:0003735 ... G1U7M4 27863242
    78 5lzz:dd (3.47) BS02 ZN ? GO:0003735 ... G1U7M4 27863242
    79 5lzz:e (3.47) BS01 rna ? GO:0003735 ... G1TUN8 27863242
    80 5lzz:ee (3.47) BS01 rna ? GO:0003735 ... G1T8A2 27863242
    81 5lzz:f (3.47) BS01 rna ? GO:0000049 ... G1SF08 27863242
    82 5lzz:ff (3.47) BS01 rna ? GO:0003723 ... G1SK22 27863242
    83 5lzz:ff (3.47) BS02 ZN ? GO:0003723 ... G1SK22 27863242
    84 5lzz:g (3.47) BS01 rna N/A GO:0003735 ... N/A 27863242
    85 5lzz:gg (3.47) BS01 rna ? GO:0001891 ... G1SJB4 27863242
    86 5lzz:h (3.47) BS01 rna ? GO:0000463 ... G1SIT5 27863242
    87 5lzz:h (3.47) BS02 rna ? GO:0000463 ... G1SIT5 27863242
    88 5lzz:i (3.47) BS01 rna ? GO:0002181 ... G1TTQ5 27863242
    89 5lzz:ii (3.47) BS01 rna 3.1.-.- GO:0001833 ... Q9BRX2 27863242
    90 5lzz:ii (3.47) BS02 rna 3.1.-.- GO:0001833 ... Q9BRX2 27863242
    91 5lzz:j (3.47) BS01 rna ? GO:0003723 ... U3KPD5 27863242
    92 5lzz:j (3.47) BS02 rna ? GO:0003723 ... U3KPD5 27863242
    93 5lzz:j (3.47) BS03 ZN ? GO:0003723 ... U3KPD5 27863242
    94 5lzz:jj (3.47) BS01 MG 3.6.5.- GO:0003746 ... Q9Y450 27863242
    95 5lzz:k (3.47) BS01 rna N/A GO:0003735 ... N/A 27863242
    96 5lzz:l (3.47) BS01 rna ? GO:0003735 ... G1TTN1 27863242
    97 5lzz:l (3.47) BS02 rna ? GO:0003735 ... G1TTN1 27863242
    98 5lzz:m (3.47) BS01 rna N/A GO:0003735 ... N/A 27863242
    99 5lzz:m (3.47) BS02 ZN N/A GO:0003735 ... N/A 27863242
    100 5lzz:o (3.47) BS01 rna ? GO:0003735 ... G1T040 27863242
    101 5lzz:o (3.47) BS02 rna ? GO:0003735 ... G1T040 27863242
    102 5lzz:o (3.47) BS03 rna ? GO:0003735 ... G1T040 27863242
    103 5lzz:o (3.47) BS04 ZN ? GO:0003735 ... G1T040 27863242
    104 5lzz:p (3.47) BS01 rna ? GO:0003735 ... G1SY53 27863242
    105 5lzz:p (3.47) BS02 ZN ? GO:0003735 ... G1SY53 27863242
    106 5lzz:r (3.47) BS01 rna ? GO:0003735 ... G1U7L1 27863242
    107 5lzz:s (3.47) BS01 rna N/A GO:0042254 ... N/A 27863242
    108 5lzz:t (3.47) BS01 rna ? GO:0003723 ... G1SMR7 27863242
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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