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BioLiP
Download all results in tab-seperated text for 65 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5lze:0 (3.5) BS01 rna ? GO:0000027 ... P0A7N4 27842381
    2 5lze:1 (3.5) BS01 rna ? GO:0000027 ... P0A7N9 27842381
    3 5lze:2 (3.5) BS01 rna ? GO:0002181 ... P0A7P5 27842381
    4 5lze:3 (3.5) BS01 rna ? GO:0002181 ... P0A7Q1 27842381
    5 5lze:4 (3.5) BS01 rna ? GO:0002181 ... P0A7Q6 27842381
    6 5lze:4 (3.5) BS02 ZN ? GO:0002181 ... P0A7Q6 27842381
    7 5lze:6 (3.5) BS01 rna ? GO:0002181 ... P0A7M9 27842381
    8 5lze:6 (3.5) BS02 ZN ? GO:0002181 ... P0A7M9 27842381
    9 5lze:C (3.5) BS01 rna ? GO:0000027 ... P60422 27842381
    10 5lze:C (3.5) BS02 rna ? GO:0000027 ... P60422 27842381
    11 5lze:D (3.5) BS01 rna ? GO:0000027 ... P60438 27842381
    12 5lze:E (3.5) BS01 rna ? GO:0001070 ... P60723 27842381
    13 5lze:F (3.5) BS01 rna ? GO:0000027 ... P62399 27842381
    14 5lze:F (3.5) BS02 rna ? GO:0000027 ... P62399 27842381
    15 5lze:F (3.5) BS03 rna ? GO:0000027 ... P62399 27842381
    16 5lze:G (3.5) BS01 rna ? GO:0000027 ... P0AG55 27842381
    17 5lze:H (3.5) BS01 rna ? GO:0002181 ... P0A7R1 27842381
    18 5lze:I (3.5) BS01 rna ? GO:0000027 ... P0A7J7 27842381
    19 5lze:J (3.5) BS01 rna ? GO:0002181 ... P0AA10 27842381
    20 5lze:K (3.5) BS01 rna ? GO:0002181 ... P0ADY3 27842381
    21 5lze:K (3.5) BS02 rna ? GO:0002181 ... P0ADY3 27842381
    22 5lze:L (3.5) BS01 rna ? GO:0002181 ... P02413 27842381
    23 5lze:M (3.5) BS01 rna ? GO:0000027 ... P0ADY7 27842381
    24 5lze:M (3.5) BS02 rna ? GO:0000027 ... P0ADY7 27842381
    25 5lze:M (3.5) BS03 rna ? GO:0000027 ... P0ADY7 27842381
    26 5lze:N (3.5) BS01 rna ? GO:0000027 ... P0AG44 27842381
    27 5lze:O (3.5) BS01 rna ? GO:0002181 ... P0C018 27842381
    28 5lze:O (3.5) BS02 rna ? GO:0002181 ... P0C018 27842381
    29 5lze:P (3.5) BS01 rna ? GO:0000027 ... P0A7K6 27842381
    30 5lze:P (3.5) BS02 rna ? GO:0000027 ... P0A7K6 27842381
    31 5lze:Q (3.5) BS01 rna ? GO:0000027 ... P0A7L3 27842381
    32 5lze:R (3.5) BS01 rna ? GO:0002181 ... P0AG48 27842381
    33 5lze:S (3.5) BS01 rna ? GO:0002181 ... P61175 27842381
    34 5lze:T (3.5) BS01 rna ? GO:0000027 ... P0ADZ0 27842381
    35 5lze:U (3.5) BS01 rna ? GO:0000027 ... P60624 27842381
    36 5lze:V (3.5) BS01 rna ? GO:0000027 ... P68919 27842381
    37 5lze:W (3.5) BS01 rna ? GO:0003735 ... P0A7L8 27842381
    38 5lze:W (3.5) BS02 rna ? GO:0003735 ... P0A7L8 27842381
    39 5lze:X (3.5) BS01 rna ? GO:0000027 ... P0A7M2 27842381
    40 5lze:Y (3.5) BS01 rna ? GO:0000027 ... P0A7M6 27842381
    41 5lze:Z (3.5) BS01 rna ? GO:0000027 ... P0AG51 27842381
    42 5lze:b (3.5) BS01 rna ? GO:0000028 ... P0A7V0 27842381
    43 5lze:c (3.5) BS01 rna ? GO:0003676 ... P0A7V3 27842381
    44 5lze:c (3.5) BS02 rna ? GO:0003676 ... P0A7V3 27842381
    45 5lze:d (3.5) BS01 rna ? GO:0000028 ... P0A7V8 27842381
    46 5lze:e (3.5) BS01 rna ? GO:0000028 ... P0A7W1 27842381
    47 5lze:e (3.5) BS02 rna ? GO:0000028 ... P0A7W1 27842381
    48 5lze:f (3.5) BS01 rna ? GO:0003735 ... P02358 27842381
    49 5lze:g (3.5) BS01 rna ? GO:0003723 ... P02359 27842381
    50 5lze:h (3.5) BS01 rna ? GO:0000028 ... P0A7W7 27842381
    51 5lze:i (3.5) BS01 rna ? GO:0000049 ... P0A7X3 27842381
    52 5lze:i (3.5) BS02 rna ? GO:0000049 ... P0A7X3 27842381
    53 5lze:j (3.5) BS01 rna ? GO:0000049 ... P0A7R5 27842381
    54 5lze:k (3.5) BS01 rna ? GO:0002181 ... P0A7R9 27842381
    55 5lze:l (3.5) BS01 rna ? GO:0000049 ... P0A7S3 27842381
    56 5lze:m (3.5) BS01 rna ? GO:0000049 ... P0A7S9 27842381
    57 5lze:n (3.5) BS01 rna ? GO:0000028 ... P0AG59 27842381
    58 5lze:o (3.5) BS01 rna ? GO:0000028 ... P0ADZ4 27842381
    59 5lze:o (3.5) BS02 rna ? GO:0000028 ... P0ADZ4 27842381
    60 5lze:p (3.5) BS01 rna ? GO:0000028 ... P0A7T3 27842381
    61 5lze:q (3.5) BS01 rna ? GO:0000028 ... P0AG63 27842381
    62 5lze:r (3.5) BS01 rna ? GO:0003735 ... P0A7T7 27842381
    63 5lze:s (3.5) BS01 rna ? GO:0003723 ... P0A7U3 27842381
    64 5lze:t (3.5) BS01 rna ? GO:0000028 ... P0A7U7 27842381
    65 5lze:u (3.5) BS01 rna ? GO:0000028 ... P68679 27842381
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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