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BioLiP
Download all results in tab-seperated text for 70 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5lzc:0 (4.8) BS01 rna ? GO:0000027 ... P0A7N4 27842381
    2 5lzc:1 (4.8) BS01 rna ? GO:0000027 ... P0A7N9 27842381
    3 5lzc:2 (4.8) BS01 rna ? GO:0002181 ... P0A7P5 27842381
    4 5lzc:3 (4.8) BS01 rna ? GO:0002181 ... P0A7Q1 27842381
    5 5lzc:4 (4.8) BS01 rna ? GO:0002181 ... P0A7Q6 27842381
    6 5lzc:4 (4.8) BS02 ZN ? GO:0002181 ... P0A7Q6 27842381
    7 5lzc:6 (4.8) BS01 rna ? GO:0002181 ... P0A7M9 27842381
    8 5lzc:6 (4.8) BS02 rna ? GO:0002181 ... P0A7M9 27842381
    9 5lzc:6 (4.8) BS03 ZN ? GO:0002181 ... P0A7M9 27842381
    10 5lzc:C (4.8) BS01 rna ? GO:0000027 ... P60422 27842381
    11 5lzc:D (4.8) BS01 rna ? GO:0000027 ... P60438 27842381
    12 5lzc:E (4.8) BS01 rna ? GO:0001070 ... P60723 27842381
    13 5lzc:F (4.8) BS01 rna ? GO:0000027 ... P62399 27842381
    14 5lzc:F (4.8) BS02 rna ? GO:0000027 ... P62399 27842381
    15 5lzc:F (4.8) BS03 rna ? GO:0000027 ... P62399 27842381
    16 5lzc:G (4.8) BS01 rna ? GO:0000027 ... P0AG55 27842381
    17 5lzc:H (4.8) BS01 rna ? GO:0002181 ... P0A7R1 27842381
    18 5lzc:I (4.8) BS01 rna ? GO:0000027 ... P0A7J7 27842381
    19 5lzc:J (4.8) BS01 rna ? GO:0002181 ... P0AA10 27842381
    20 5lzc:K (4.8) BS01 rna ? GO:0002181 ... P0ADY3 27842381
    21 5lzc:K (4.8) BS02 rna ? GO:0002181 ... P0ADY3 27842381
    22 5lzc:L (4.8) BS01 rna ? GO:0002181 ... P02413 27842381
    23 5lzc:M (4.8) BS01 rna ? GO:0000027 ... P0ADY7 27842381
    24 5lzc:M (4.8) BS02 rna ? GO:0000027 ... P0ADY7 27842381
    25 5lzc:N (4.8) BS01 rna ? GO:0000027 ... P0AG44 27842381
    26 5lzc:O (4.8) BS01 rna ? GO:0002181 ... P0C018 27842381
    27 5lzc:O (4.8) BS02 rna ? GO:0002181 ... P0C018 27842381
    28 5lzc:P (4.8) BS01 rna ? GO:0000027 ... P0A7K6 27842381
    29 5lzc:P (4.8) BS02 rna ? GO:0000027 ... P0A7K6 27842381
    30 5lzc:Q (4.8) BS01 rna ? GO:0000027 ... P0A7L3 27842381
    31 5lzc:R (4.8) BS01 rna ? GO:0002181 ... P0AG48 27842381
    32 5lzc:S (4.8) BS01 rna ? GO:0002181 ... P61175 27842381
    33 5lzc:T (4.8) BS01 rna ? GO:0000027 ... P0ADZ0 27842381
    34 5lzc:U (4.8) BS01 rna ? GO:0000027 ... P60624 27842381
    35 5lzc:V (4.8) BS01 rna ? GO:0000027 ... P68919 27842381
    36 5lzc:V (4.8) BS02 rna ? GO:0000027 ... P68919 27842381
    37 5lzc:W (4.8) BS01 rna ? GO:0003735 ... P0A7L8 27842381
    38 5lzc:W (4.8) BS02 rna ? GO:0003735 ... P0A7L8 27842381
    39 5lzc:X (4.8) BS01 rna ? GO:0000027 ... P0A7M2 27842381
    40 5lzc:Y (4.8) BS01 rna ? GO:0000027 ... P0A7M6 27842381
    41 5lzc:Z (4.8) BS01 rna ? GO:0000027 ... P0AG51 27842381
    42 5lzc:b (4.8) BS01 rna ? GO:0000028 ... P0A7V0 27842381
    43 5lzc:c (4.8) BS01 rna ? GO:0003676 ... P0A7V3 27842381
    44 5lzc:c (4.8) BS02 rna ? GO:0003676 ... P0A7V3 27842381
    45 5lzc:d (4.8) BS01 rna ? GO:0000028 ... P0A7V8 27842381
    46 5lzc:e (4.8) BS01 rna ? GO:0000028 ... P0A7W1 27842381
    47 5lzc:f (4.8) BS01 rna ? GO:0003735 ... P02358 27842381
    48 5lzc:g (4.8) BS01 rna ? GO:0003723 ... P02359 27842381
    49 5lzc:h (4.8) BS01 rna ? GO:0000028 ... P0A7W7 27842381
    50 5lzc:i (4.8) BS01 rna ? GO:0000049 ... P0A7X3 27842381
    51 5lzc:i (4.8) BS02 rna ? GO:0000049 ... P0A7X3 27842381
    52 5lzc:j (4.8) BS01 rna ? GO:0000049 ... P0A7R5 27842381
    53 5lzc:k (4.8) BS01 rna ? GO:0002181 ... P0A7R9 27842381
    54 5lzc:l (4.8) BS01 rna ? GO:0000049 ... P0A7S3 27842381
    55 5lzc:m (4.8) BS01 rna ? GO:0000049 ... P0A7S9 27842381
    56 5lzc:m (4.8) BS02 rna ? GO:0000049 ... P0A7S9 27842381
    57 5lzc:n (4.8) BS01 rna ? GO:0000028 ... P0AG59 27842381
    58 5lzc:o (4.8) BS01 rna ? GO:0000028 ... P0ADZ4 27842381
    59 5lzc:o (4.8) BS02 rna ? GO:0000028 ... P0ADZ4 27842381
    60 5lzc:p (4.8) BS01 rna ? GO:0000028 ... P0A7T3 27842381
    61 5lzc:q (4.8) BS01 rna ? GO:0000028 ... P0AG63 27842381
    62 5lzc:r (4.8) BS01 rna ? GO:0003735 ... P0A7T7 27842381
    63 5lzc:s (4.8) BS01 rna ? GO:0003723 ... P0A7U3 27842381
    64 5lzc:t (4.8) BS01 rna ? GO:0000028 ... P0A7U7 27842381
    65 5lzc:u (4.8) BS01 rna ? GO:0000028 ... P68679 27842381
    66 5lzc:z (4.8) BS01 rna ? GO:0000049 ... P14081 27842381
    67 5lzc:z (4.8) BS02 rna ? GO:0000049 ... P14081 27842381
    68 5lzc:z (4.8) BS03 rna ? GO:0000049 ... P14081 27842381
    69 5lzc:z (4.8) BS04 SEC ? GO:0000049 ... P14081 27842381
    70 5lzc:z (4.8) BS05 GNP ? GO:0000049 ... P14081 27842381
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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