Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 26 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5lmt:B (4.15) BS01 rna ? GO:0003735 ... P80371 27662086
    2 5lmt:C (4.15) BS01 rna ? GO:0003676 ... P80372 27662086
    3 5lmt:D (4.15) BS01 rna ? GO:0003723 ... P80373 27662086
    4 5lmt:D (4.15) BS02 ZN ? GO:0003723 ... P80373 27662086
    5 5lmt:E (4.15) BS01 rna ? GO:0003723 ... Q5SHQ5 27662086
    6 5lmt:F (4.15) BS01 rna ? GO:0003735 ... Q5SLP8 27662086
    7 5lmt:G (4.15) BS01 rna ? GO:0000028 ... P17291 27662086
    8 5lmt:G (4.15) BS02 rna ? GO:0000028 ... P17291 27662086
    9 5lmt:H (4.15) BS01 rna ? GO:0003735 ... P0DOY9 27662086
    10 5lmt:I (4.15) BS01 rna ? GO:0000049 ... P80374 27662086
    11 5lmt:J (4.15) BS01 rna ? GO:0000049 ... Q5SHN7 27662086
    12 5lmt:K (4.15) BS01 rna ? GO:0003735 ... P80376 27662086
    13 5lmt:K (4.15) BS02 rna ? GO:0003735 ... P80376 27662086
    14 5lmt:L (4.15) BS01 rna ? GO:0000049 ... Q5SHN3 27662086
    15 5lmt:M (4.15) BS01 rna ? GO:0000049 ... P80377 27662086
    16 5lmt:N (4.15) BS01 rna ? GO:0003735 ... P0DOY6 27662086
    17 5lmt:N (4.15) BS02 ZN ? GO:0003735 ... P0DOY6 27662086
    18 5lmt:O (4.15) BS01 rna ? GO:0003735 ... Q5SJ76 27662086
    19 5lmt:P (4.15) BS01 rna ? GO:0003735 ... Q5SJH3 27662086
    20 5lmt:Q (4.15) BS01 rna ? GO:0003735 ... P0DOY7 27662086
    21 5lmt:R (4.15) BS01 rna ? GO:0003735 ... Q5SLQ0 27662086
    22 5lmt:S (4.15) BS01 rna ? GO:0000028 ... Q5SHP2 27662086
    23 5lmt:T (4.15) BS01 rna ? GO:0003723 ... P80380 27662086
    24 5lmt:W (4.15) BS01 rna ? GO:0003723 ... Q5SHR1 27662086
    25 5lmt:X (4.15) BS01 rna ? GO:0003743 ... Q5SKU2 27662086
    26 5lmt:X (4.15) BS02 rna ? GO:0003743 ... Q5SKU2 27662086
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218