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BioLiP
Download all results in tab-seperated text for 26 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5lmq:B (4.2) BS01 rna ? GO:0003735 ... P80371 27662086
    2 5lmq:C (4.2) BS01 rna ? GO:0003676 ... P80372 27662086
    3 5lmq:D (4.2) BS01 rna ? GO:0003723 ... P80373 27662086
    4 5lmq:D (4.2) BS02 ZN ? GO:0003723 ... P80373 27662086
    5 5lmq:E (4.2) BS01 rna ? GO:0003723 ... Q5SHQ5 27662086
    6 5lmq:F (4.2) BS01 rna ? GO:0003735 ... Q5SLP8 27662086
    7 5lmq:G (4.2) BS01 rna ? GO:0000028 ... P17291 27662086
    8 5lmq:G (4.2) BS02 rna ? GO:0000028 ... P17291 27662086
    9 5lmq:H (4.2) BS01 rna ? GO:0003735 ... P0DOY9 27662086
    10 5lmq:I (4.2) BS01 rna ? GO:0000049 ... P80374 27662086
    11 5lmq:J (4.2) BS01 rna ? GO:0000049 ... Q5SHN7 27662086
    12 5lmq:K (4.2) BS01 rna ? GO:0003735 ... P80376 27662086
    13 5lmq:L (4.2) BS01 rna ? GO:0000049 ... Q5SHN3 27662086
    14 5lmq:M (4.2) BS01 rna ? GO:0000049 ... P80377 27662086
    15 5lmq:M (4.2) BS02 rna ? GO:0000049 ... P80377 27662086
    16 5lmq:N (4.2) BS01 rna ? GO:0003735 ... P0DOY6 27662086
    17 5lmq:N (4.2) BS02 ZN ? GO:0003735 ... P0DOY6 27662086
    18 5lmq:O (4.2) BS01 rna ? GO:0003735 ... Q5SJ76 27662086
    19 5lmq:P (4.2) BS01 rna ? GO:0003735 ... Q5SJH3 27662086
    20 5lmq:Q (4.2) BS01 rna ? GO:0003735 ... P0DOY7 27662086
    21 5lmq:R (4.2) BS01 rna ? GO:0003735 ... Q5SLQ0 27662086
    22 5lmq:S (4.2) BS01 rna ? GO:0000028 ... Q5SHP2 27662086
    23 5lmq:T (4.2) BS01 rna ? GO:0003723 ... P80380 27662086
    24 5lmq:W (4.2) BS01 rna ? GO:0003723 ... Q5SHR1 27662086
    25 5lmq:X (4.2) BS01 rna ? GO:0003743 ... Q5SKU2 27662086
    26 5lmq:X (4.2) BS02 rna ? GO:0003743 ... Q5SKU2 27662086
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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