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BioLiP
Download all results in tab-seperated text for 54 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5li0:0 (3.8) BS01 rna ? GO:0003735 ... Q2FZ60 27906650
    2 5li0:1 (3.8) BS01 rna ? GO:0003735 ... Q2FW14 27906650
    3 5li0:2 (3.8) BS01 rna ? GO:0003735 ... P0A0G2 27906650
    4 5li0:3 (3.8) BS01 rna ? GO:0003735 ... Q2FWD8 27906650
    5 5li0:4 (3.8) BS01 rna ? GO:0003735 ... Q2FZF1 27906650
    6 5li0:6 (3.8) BS01 rna ? GO:0003735 ... Q2FUQ0 27906650
    7 5li0:7 (3.8) BS01 rna ? GO:0003735 ... Q2FXQ0 27906650
    8 5li0:8 (3.8) BS01 rna ? GO:0003735 ... Q2FW29 27906650
    9 5li0:8 (3.8) BS02 ZN ? GO:0003735 ... Q2FW29 27906650
    10 5li0:D (3.8) BS01 rna ? GO:0002181 ... P60430 27906650
    11 5li0:E (3.8) BS01 rna ? GO:0003735 ... Q2FW06 27906650
    12 5li0:F (3.8) BS01 rna ? GO:0003735 ... Q2FW07 27906650
    13 5li0:G (3.8) BS01 rna ? GO:0000049 ... Q2FW18 27906650
    14 5li0:G (3.8) BS02 rna ? GO:0000049 ... Q2FW18 27906650
    15 5li0:H (3.8) BS01 rna ? GO:0002181 ... Q2FW21 27906650
    16 5li0:M (3.8) BS01 rna ? GO:0003729 ... Q2FW38 27906650
    17 5li0:N (3.8) BS01 rna ? GO:0003735 ... Q2FW16 27906650
    18 5li0:N (3.8) BS02 rna ? GO:0003735 ... Q2FW16 27906650
    19 5li0:O (3.8) BS01 rna ? GO:0003735 ... P0A0F8 27906650
    20 5li0:P (3.8) BS01 rna ? GO:0000049 ... Q2FW13 27906650
    21 5li0:P (3.8) BS02 rna ? GO:0000049 ... Q2FW13 27906650
    22 5li0:Q (3.8) BS01 rna ? GO:0003735 ... Q2FW33 27906650
    23 5li0:R (3.8) BS01 rna ? GO:0003735 ... Q2FW22 27906650
    24 5li0:R (3.8) BS02 rna ? GO:0003735 ... Q2FW22 27906650
    25 5li0:S (3.8) BS01 rna ? GO:0003735 ... Q2FZ42 27906650
    26 5li0:S (3.8) BS02 rna ? GO:0003735 ... Q2FZ42 27906650
    27 5li0:T (3.8) BS01 rna ? GO:0000027 ... Q2FXQ1 27906650
    28 5li0:U (3.8) BS01 rna ? GO:0003723 ... Q2FXS8 27906650
    29 5li0:V (3.8) BS01 rna ? GO:0003735 ... Q2FW11 27906650
    30 5li0:W (3.8) BS01 rna ? GO:0000027 ... Q2FW08 27906650
    31 5li0:X (3.8) BS01 rna ? GO:0003723 ... Q2FW17 27906650
    32 5li0:Y (3.8) BS01 rna ? GO:0003735 ... Q2G0S0 27906650
    33 5li0:Z (3.8) BS01 rna ? GO:0003735 ... Q2FXT0 27906650
    34 5li0:Z (3.8) BS02 rna ? GO:0003735 ... Q2FXT0 27906650
    35 5li0:b (3.8) BS01 rna ? GO:0003735 ... Q2FZ25 27906650
    36 5li0:c (3.8) BS01 rna ? GO:0003676 ... Q2FW12 27906650
    37 5li0:d (3.8) BS01 rna ? GO:0003723 ... Q2FXK6 27906650
    38 5li0:e (3.8) BS01 rna ? GO:0003723 ... Q2FW23 27906650
    39 5li0:f (3.8) BS01 rna ? GO:0003735 ... Q2G113 27906650
    40 5li0:g (3.8) BS01 rna ? GO:0000028 ... P48940 27906650
    41 5li0:h (3.8) BS01 rna ? GO:0003735 ... Q2FW20 27906650
    42 5li0:i (3.8) BS01 rna ? GO:0003723 ... Q2FW39 27906650
    43 5li0:j (3.8) BS01 rna ? GO:0000049 ... Q931G5 27906650
    44 5li0:k (3.8) BS01 rna ? GO:0003735 ... Q2FW31 27906650
    45 5li0:l (3.8) BS01 rna ? GO:0000049 ... Q5HID0 27906650
    46 5li0:m (3.8) BS01 rna ? GO:0000049 ... Q2FW30 27906650
    47 5li0:n (3.8) BS01 rna ? GO:0003735 ... Q2FW19 27906650
    48 5li0:o (3.8) BS01 rna ? GO:0003735 ... Q2G2Q1 27906650
    49 5li0:o (3.8) BS02 rna ? GO:0003735 ... Q2G2Q1 27906650
    50 5li0:p (3.8) BS01 rna ? GO:0003735 ... Q2FZ45 27906650
    51 5li0:q (3.8) BS01 rna ? GO:0003735 ... Q2FW15 27906650
    52 5li0:r (3.8) BS01 rna ? GO:0003735 ... Q2G111 27906650
    53 5li0:s (3.8) BS01 rna ? GO:0000028 ... Q2FW10 27906650
    54 5li0:t (3.8) BS01 rna ? GO:0003723 ... Q2FXY6 27906650
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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