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BioLiP
Download all results in tab-seperated text for 64 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5kcs:10 (3.9) BS01 rna ? GO:0000027 ... P0A7L8 27330110
    2 5kcs:10 (3.9) BS02 rna ? GO:0000027 ... P0A7L8 27330110
    3 5kcs:11 (3.9) BS01 rna ? GO:0000027 ... P0A7M2 27330110
    4 5kcs:12 (3.9) BS01 rna ? GO:0000027 ... P0A7M6 27330110
    5 5kcs:13 (3.9) BS01 rna ? GO:0000027 ... P0AG51 27330110
    6 5kcs:13 (3.9) BS02 rna ? GO:0000027 ... P0AG51 27330110
    7 5kcs:14 (3.9) BS01 rna ? GO:0002181 ... P0A7M9 27330110
    8 5kcs:15 (3.9) BS01 rna ? GO:0000027 ... P0A7N4 27330110
    9 5kcs:16 (3.9) BS01 rna ? GO:0000027 ... P0A7N9 27330110
    10 5kcs:17 (3.9) BS01 rna ? GO:0002181 ... P0A7P5 27330110
    11 5kcs:18 (3.9) BS01 rna ? GO:0002181 ... P0A7Q1 27330110
    12 5kcs:19 (3.9) BS01 rna ? GO:0002181 ... P0A7Q6 27330110
    13 5kcs:1D (3.9) BS01 rna ? GO:0000027 ... P60422 27330110
    14 5kcs:1E (3.9) BS01 rna ? GO:0000027 ... P60438 27330110
    15 5kcs:1F (3.9) BS01 rna ? GO:0001070 ... P60723 27330110
    16 5kcs:1G (3.9) BS01 rna ? GO:0000027 ... P62399 27330110
    17 5kcs:1G (3.9) BS02 rna ? GO:0000027 ... P62399 27330110
    18 5kcs:1G (3.9) BS03 rna ? GO:0000027 ... P62399 27330110
    19 5kcs:1H (3.9) BS01 rna ? GO:0000027 ... P0AG55 27330110
    20 5kcs:1I (3.9) BS01 rna ? GO:0002181 ... P0A7R1 27330110
    21 5kcs:1J (3.9) BS01 rna ? GO:0002181 ... P0A7J3 27330110
    22 5kcs:1K (3.9) BS01 rna ? GO:0000027 ... P0A7J7 27330110
    23 5kcs:1N (3.9) BS01 rna ? GO:0002181 ... P0AA10 27330110
    24 5kcs:1O (3.9) BS01 rna ? GO:0002181 ... P0ADY3 27330110
    25 5kcs:1O (3.9) BS02 rna ? GO:0002181 ... P0ADY3 27330110
    26 5kcs:1P (3.9) BS01 rna ? GO:0002181 ... P02413 27330110
    27 5kcs:1Q (3.9) BS01 rna ? GO:0000027 ... P0ADY7 27330110
    28 5kcs:1Q (3.9) BS02 rna ? GO:0000027 ... P0ADY7 27330110
    29 5kcs:1R (3.9) BS01 rna ? GO:0000027 ... P0AG44 27330110
    30 5kcs:1S (3.9) BS01 rna ? GO:0002181 ... P0C018 27330110
    31 5kcs:1S (3.9) BS02 rna ? GO:0002181 ... P0C018 27330110
    32 5kcs:1T (3.9) BS01 rna ? GO:0000027 ... P0A7K6 27330110
    33 5kcs:1T (3.9) BS02 rna ? GO:0000027 ... P0A7K6 27330110
    34 5kcs:1U (3.9) BS01 rna ? GO:0000027 ... P0A7L3 27330110
    35 5kcs:1V (3.9) BS01 rna ? GO:0002181 ... P0AG48 27330110
    36 5kcs:1W (3.9) BS01 rna ? GO:0002181 ... P61175 27330110
    37 5kcs:1X (3.9) BS01 rna ? GO:0000027 ... P0ADZ0 27330110
    38 5kcs:1Y (3.9) BS01 rna ? GO:0000027 ... P60624 27330110
    39 5kcs:1Z (3.9) BS01 rna ? GO:0000027 ... P68919 27330110
    40 5kcs:1Z (3.9) BS02 rna ? GO:0000027 ... P68919 27330110
    41 5kcs:1b (3.9) BS01 rna ? GO:0000028 ... P0A7V0 27330110
    42 5kcs:1c (3.9) BS01 rna ? GO:0000028 ... P0A7V3 27330110
    43 5kcs:1d (3.9) BS01 rna ? GO:0000028 ... P0A7V8 27330110
    44 5kcs:1e (3.9) BS01 rna ? GO:0000028 ... P0A7W1 27330110
    45 5kcs:1f (3.9) BS01 rna ? GO:0002181 ... P02358 27330110
    46 5kcs:1g (3.9) BS01 rna ? GO:0000028 ... P02359 27330110
    47 5kcs:1h (3.9) BS01 rna ? GO:0000028 ... P0A7W7 27330110
    48 5kcs:1i (3.9) BS01 rna ? GO:0000049 ... P0A7X3 27330110
    49 5kcs:1i (3.9) BS02 rna ? GO:0000049 ... P0A7X3 27330110
    50 5kcs:1j (3.9) BS01 rna ? GO:0000049 ... P0A7R5 27330110
    51 5kcs:1k (3.9) BS01 rna ? GO:0002181 ... P0A7R9 27330110
    52 5kcs:1l (3.9) BS01 rna ? GO:0000049 ... P0A7S3 27330110
    53 5kcs:1m (3.9) BS01 rna ? GO:0000049 ... P0A7S9 27330110
    54 5kcs:1n (3.9) BS01 rna ? GO:0000028 ... P0AG59 27330110
    55 5kcs:1o (3.9) BS01 rna ? GO:0000028 ... P0ADZ4 27330110
    56 5kcs:1o (3.9) BS02 rna ? GO:0000028 ... P0ADZ4 27330110
    57 5kcs:1p (3.9) BS01 rna ? GO:0000028 ... P0A7T3 27330110
    58 5kcs:1q (3.9) BS01 rna ? GO:0000028 ... P0AG63 27330110
    59 5kcs:1r (3.9) BS01 rna ? GO:0002181 ... P0A7T7 27330110
    60 5kcs:1s (3.9) BS01 rna ? GO:0000028 ... P0A7U3 27330110
    61 5kcs:1t (3.9) BS01 rna ? GO:0000028 ... P0A7U7 27330110
    62 5kcs:1u (3.9) BS01 rna ? GO:0000028 ... P68679 27330110
    63 5kcs:1w (3.9) BS01 rna ? GO:0003924 ... P21598 27330110
    64 5kcs:1w (3.9) BS02 rna ? GO:0003924 ... P21598 27330110
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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