Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 48 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5k02:A (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    2 5k02:A (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    3 5k02:B (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    4 5k02:B (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    5 5k02:C (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    6 5k02:C (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    7 5k02:D (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    8 5k02:D (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    9 5k02:E (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    10 5k02:E (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    11 5k02:F (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    12 5k02:F (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    13 5k02:G (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    14 5k02:G (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    15 5k02:H (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    16 5k02:H (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    17 5k02:I (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    18 5k02:I (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    19 5k02:J (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    20 5k02:J (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    21 5k02:K (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    22 5k02:K (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    23 5k02:L (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    24 5k02:L (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    25 5k02:M (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    26 5k02:M (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    27 5k02:N (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    28 5k02:N (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    29 5k02:O (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    30 5k02:O (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    31 5k02:P (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    32 5k02:P (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    33 5k02:Q (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    34 5k02:Q (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    35 5k02:R (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    36 5k02:R (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    37 5k02:S (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    38 5k02:S (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    39 5k02:T (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    40 5k02:T (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    41 5k02:U (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    42 5k02:U (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    43 5k02:V (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    44 5k02:V (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    45 5k02:W (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    46 5k02:W (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    47 5k02:X (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    48 5k02:X (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218