Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 123 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5jc9:AB (3.03) BS01 rna ? GO:0000028 ... P0A7V0 27382179
    2 5jc9:AB (3.03) BS02 ZN ? GO:0000028 ... P0A7V0 27382179
    3 5jc9:AC (3.03) BS01 rna ? GO:0003676 ... P0A7V3 27382179
    4 5jc9:AD (3.03) BS01 rna ? GO:0000028 ... P0A7V8 27382179
    5 5jc9:AE (3.03) BS01 rna ? GO:0000028 ... P0A7W1 27382179
    6 5jc9:AF (3.03) BS01 rna ? GO:0003735 ... P02358 27382179
    7 5jc9:AG (3.03) BS01 rna ? GO:0003723 ... P02359 27382179
    8 5jc9:AH (3.03) BS01 rna ? GO:0000028 ... P0A7W7 27382179
    9 5jc9:AI (3.03) BS01 rna ? GO:0000049 ... P0A7X3 27382179
    10 5jc9:AJ (3.03) BS01 rna ? GO:0000049 ... P0A7R5 27382179
    11 5jc9:AK (3.03) BS01 rna ? GO:0002181 ... P0A7R9 27382179
    12 5jc9:AL (3.03) BS01 rna ? GO:0000049 ... P0A7S3 27382179
    13 5jc9:AM (3.03) BS01 rna ? GO:0000049 ... P0A7S9 27382179
    14 5jc9:AN (3.03) BS01 rna ? GO:0000028 ... P0AG59 27382179
    15 5jc9:AO (3.03) BS01 rna ? GO:0000028 ... P0ADZ4 27382179
    16 5jc9:AO (3.03) BS02 rna ? GO:0000028 ... P0ADZ4 27382179
    17 5jc9:AP (3.03) BS01 rna ? GO:0000028 ... P0A7T3 27382179
    18 5jc9:AQ (3.03) BS01 rna ? GO:0000028 ... P0AG63 27382179
    19 5jc9:AR (3.03) BS01 rna ? GO:0003735 ... P0A7T7 27382179
    20 5jc9:AS (3.03) BS01 rna ? GO:0003723 ... P0A7U3 27382179
    21 5jc9:AT (3.03) BS01 rna ? GO:0000028 ... P0A7U7 27382179
    22 5jc9:AU (3.03) BS01 rna ? GO:0003735 ... P68679 27382179
    23 5jc9:BB (3.03) BS01 rna ? GO:0000028 ... P0A7V0 27382179
    24 5jc9:BC (3.03) BS01 rna ? GO:0003676 ... P0A7V3 27382179
    25 5jc9:BD (3.03) BS01 rna ? GO:0000028 ... P0A7V8 27382179
    26 5jc9:BD (3.03) BS02 rna ? GO:0000028 ... P0A7V8 27382179
    27 5jc9:BE (3.03) BS01 rna ? GO:0000028 ... P0A7W1 27382179
    28 5jc9:BF (3.03) BS01 rna ? GO:0003735 ... P02358 27382179
    29 5jc9:BG (3.03) BS01 rna ? GO:0003723 ... P02359 27382179
    30 5jc9:BH (3.03) BS01 rna ? GO:0000028 ... P0A7W7 27382179
    31 5jc9:BI (3.03) BS01 rna ? GO:0000049 ... P0A7X3 27382179
    32 5jc9:BJ (3.03) BS01 rna ? GO:0000049 ... P0A7R5 27382179
    33 5jc9:BK (3.03) BS01 rna ? GO:0002181 ... P0A7R9 27382179
    34 5jc9:BL (3.03) BS01 rna ? GO:0000049 ... P0A7S3 27382179
    35 5jc9:BM (3.03) BS01 rna ? GO:0000049 ... P0A7S9 27382179
    36 5jc9:BN (3.03) BS01 rna ? GO:0000028 ... P0AG59 27382179
    37 5jc9:BO (3.03) BS01 rna ? GO:0000028 ... P0ADZ4 27382179
    38 5jc9:BO (3.03) BS02 rna ? GO:0000028 ... P0ADZ4 27382179
    39 5jc9:BP (3.03) BS01 rna ? GO:0000028 ... P0A7T3 27382179
    40 5jc9:BQ (3.03) BS01 rna ? GO:0000028 ... P0AG63 27382179
    41 5jc9:BR (3.03) BS01 rna ? GO:0003735 ... P0A7T7 27382179
    42 5jc9:BS (3.03) BS01 rna ? GO:0003723 ... P0A7U3 27382179
    43 5jc9:BT (3.03) BS01 rna ? GO:0000028 ... P0A7U7 27382179
    44 5jc9:BU (3.03) BS01 rna ? GO:0003735 ... P68679 27382179
    45 5jc9:C0 (3.03) BS01 rna ? GO:0000027 ... P0AG51 27382179
    46 5jc9:C0 (3.03) BS02 rna ? GO:0000027 ... P0AG51 27382179
    47 5jc9:C1 (3.03) BS01 rna ? GO:0000027 ... P0A7N4 27382179
    48 5jc9:C2 (3.03) BS01 rna ? GO:0000027 ... P0A7N9 27382179
    49 5jc9:C3 (3.03) BS01 rna ? GO:0002181 ... P0A7P5 27382179
    50 5jc9:C4 (3.03) BS01 rna ? GO:0002181 ... P0A7Q1 27382179
    51 5jc9:C5 (3.03) BS01 rna ? GO:0002181 ... P0A7Q6 27382179
    52 5jc9:C5 (3.03) BS02 ZN ? GO:0002181 ... P0A7Q6 27382179
    53 5jc9:CC (3.03) BS01 rna ? GO:0000027 ... P60422 27382179
    54 5jc9:CC (3.03) BS02 rna ? GO:0000027 ... P60422 27382179
    55 5jc9:CD (3.03) BS01 rna ? GO:0000027 ... P60438 27382179
    56 5jc9:CE (3.03) BS01 rna ? GO:0001070 ... P60723 27382179
    57 5jc9:CF (3.03) BS01 rna ? GO:0000027 ... P62399 27382179
    58 5jc9:CF (3.03) BS02 rna ? GO:0000027 ... P62399 27382179
    59 5jc9:CG (3.03) BS01 rna ? GO:0000027 ... P0AG55 27382179
    60 5jc9:CH (3.03) BS01 rna ? GO:0002181 ... P0A7R1 27382179
    61 5jc9:CJ (3.03) BS01 rna ? GO:0000027 ... P0A7J7 27382179
    62 5jc9:CK (3.03) BS01 rna ? GO:0002181 ... P0AA10 27382179
    63 5jc9:CL (3.03) BS01 rna ? GO:0002181 ... P0ADY3 27382179
    64 5jc9:CL (3.03) BS02 rna ? GO:0002181 ... P0ADY3 27382179
    65 5jc9:CM (3.03) BS01 rna ? GO:0002181 ... P02413 27382179
    66 5jc9:CN (3.03) BS01 rna ? GO:0000027 ... P0ADY7 27382179
    67 5jc9:CN (3.03) BS02 rna ? GO:0000027 ... P0ADY7 27382179
    68 5jc9:CO (3.03) BS01 rna ? GO:0000027 ... P0AG44 27382179
    69 5jc9:CP (3.03) BS01 rna ? GO:0002181 ... P0C018 27382179
    70 5jc9:CP (3.03) BS02 rna ? GO:0002181 ... P0C018 27382179
    71 5jc9:CQ (3.03) BS01 rna ? GO:0000027 ... P0A7K6 27382179
    72 5jc9:CQ (3.03) BS02 rna ? GO:0000027 ... P0A7K6 27382179
    73 5jc9:CR (3.03) BS01 rna ? GO:0000027 ... P0A7L3 27382179
    74 5jc9:CS (3.03) BS01 rna ? GO:0002181 ... P0AG48 27382179
    75 5jc9:CT (3.03) BS01 rna ? GO:0002181 ... P61175 27382179
    76 5jc9:CU (3.03) BS01 rna ? GO:0000027 ... P0ADZ0 27382179
    77 5jc9:CV (3.03) BS01 rna ? GO:0000027 ... P60624 27382179
    78 5jc9:CW (3.03) BS01 rna ? GO:0000027 ... P68919 27382179
    79 5jc9:CW (3.03) BS02 rna ? GO:0000027 ... P68919 27382179
    80 5jc9:CX (3.03) BS01 rna ? GO:0003735 ... P0A7L8 27382179
    81 5jc9:CX (3.03) BS02 rna ? GO:0003735 ... P0A7L8 27382179
    82 5jc9:CY (3.03) BS01 rna ? GO:0000027 ... P0A7M2 27382179
    83 5jc9:CZ (3.03) BS01 rna ? GO:0000027 ... P0A7M6 27382179
    84 5jc9:D0 (3.03) BS01 rna ? GO:0000027 ... P0AG51 27382179
    85 5jc9:D0 (3.03) BS02 rna ? GO:0000027 ... P0AG51 27382179
    86 5jc9:D1 (3.03) BS01 rna ? GO:0000027 ... P0A7N4 27382179
    87 5jc9:D2 (3.03) BS01 rna ? GO:0000027 ... P0A7N9 27382179
    88 5jc9:D3 (3.03) BS01 rna ? GO:0002181 ... P0A7P5 27382179
    89 5jc9:D4 (3.03) BS01 rna ? GO:0002181 ... P0A7Q1 27382179
    90 5jc9:D5 (3.03) BS01 rna ? GO:0002181 ... P0A7Q6 27382179
    91 5jc9:D5 (3.03) BS02 ZN ? GO:0002181 ... P0A7Q6 27382179
    92 5jc9:DC (3.03) BS01 rna ? GO:0000027 ... P60422 27382179
    93 5jc9:DD (3.03) BS01 rna ? GO:0000027 ... P60438 27382179
    94 5jc9:DE (3.03) BS01 rna ? GO:0001070 ... P60723 27382179
    95 5jc9:DF (3.03) BS01 rna ? GO:0000027 ... P62399 27382179
    96 5jc9:DF (3.03) BS02 rna ? GO:0000027 ... P62399 27382179
    97 5jc9:DG (3.03) BS01 rna ? GO:0000027 ... P0AG55 27382179
    98 5jc9:DH (3.03) BS01 rna ? GO:0002181 ... P0A7R1 27382179
    99 5jc9:DH (3.03) BS02 rna ? GO:0002181 ... P0A7R1 27382179
    100 5jc9:DI (3.03) BS01 rna ? GO:0003735 ... P0A7J3 27382179
    101 5jc9:DJ (3.03) BS01 rna ? GO:0000027 ... P0A7J7 27382179
    102 5jc9:DK (3.03) BS01 rna ? GO:0002181 ... P0AA10 27382179
    103 5jc9:DL (3.03) BS01 rna ? GO:0002181 ... P0ADY3 27382179
    104 5jc9:DL (3.03) BS02 rna ? GO:0002181 ... P0ADY3 27382179
    105 5jc9:DM (3.03) BS01 rna ? GO:0002181 ... P02413 27382179
    106 5jc9:DN (3.03) BS01 rna ? GO:0000027 ... P0ADY7 27382179
    107 5jc9:DN (3.03) BS02 rna ? GO:0000027 ... P0ADY7 27382179
    108 5jc9:DO (3.03) BS01 rna ? GO:0000027 ... P0AG44 27382179
    109 5jc9:DP (3.03) BS01 rna ? GO:0002181 ... P0C018 27382179
    110 5jc9:DP (3.03) BS02 rna ? GO:0002181 ... P0C018 27382179
    111 5jc9:DQ (3.03) BS01 rna ? GO:0000027 ... P0A7K6 27382179
    112 5jc9:DQ (3.03) BS02 rna ? GO:0000027 ... P0A7K6 27382179
    113 5jc9:DR (3.03) BS01 rna ? GO:0000027 ... P0A7L3 27382179
    114 5jc9:DS (3.03) BS01 rna ? GO:0002181 ... P0AG48 27382179
    115 5jc9:DT (3.03) BS01 rna ? GO:0002181 ... P61175 27382179
    116 5jc9:DU (3.03) BS01 rna ? GO:0000027 ... P0ADZ0 27382179
    117 5jc9:DV (3.03) BS01 rna ? GO:0000027 ... P60624 27382179
    118 5jc9:DW (3.03) BS01 rna ? GO:0000027 ... P68919 27382179
    119 5jc9:DW (3.03) BS02 rna ? GO:0000027 ... P68919 27382179
    120 5jc9:DX (3.03) BS01 rna ? GO:0003735 ... P0A7L8 27382179
    121 5jc9:DX (3.03) BS02 rna ? GO:0003735 ... P0A7L8 27382179
    122 5jc9:DY (3.03) BS01 rna ? GO:0000027 ... P0A7M2 27382179
    123 5jc9:DZ (3.03) BS01 rna ? GO:0000027 ... P0A7M6 27382179
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218