Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 111 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5j8b:0 (2.6) BS01 rna ? GO:0003735 ... P60493 27092003
    2 5j8b:0 (2.6) BS02 rna ? GO:0003735 ... P60493 27092003
    3 5j8b:0 (2.6) BS03 MG ? GO:0003735 ... P60493 27092003
    4 5j8b:1 (2.6) BS01 rna ? GO:0003735 ... P60494 27092003
    5 5j8b:1 (2.6) BS02 rna ? GO:0003735 ... P60494 27092003
    6 5j8b:1 (2.6) BS03 MG ? GO:0003735 ... P60494 27092003
    7 5j8b:2 (2.6) BS01 rna ? GO:0003735 ... Q5SHP6 27092003
    8 5j8b:3 (2.6) BS01 rna ? GO:0003735 ... Q5SHQ6 27092003
    9 5j8b:3 (2.6) BS02 rna ? GO:0003735 ... Q5SHQ6 27092003
    10 5j8b:4 (2.6) BS01 rna ? GO:0003735 ... Q5SJE1 27092003
    11 5j8b:4 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 27092003
    12 5j8b:5 (2.6) BS01 rna ? GO:0003735 ... P80339 27092003
    13 5j8b:5 (2.6) BS02 ZN ? GO:0003735 ... P80339 27092003
    14 5j8b:6 (2.6) BS01 rna ? GO:0000049 ... P35871 27092003
    15 5j8b:6 (2.6) BS02 rna ? GO:0000049 ... P35871 27092003
    16 5j8b:6 (2.6) BS03 MG ? GO:0000049 ... P35871 27092003
    17 5j8b:6 (2.6) BS04 ZN ? GO:0000049 ... P35871 27092003
    18 5j8b:7 (2.6) BS01 rna ? GO:0003735 ... P80340 27092003
    19 5j8b:7 (2.6) BS02 MG ? GO:0003735 ... P80340 27092003
    20 5j8b:7 (2.6) BS03 MG ? GO:0003735 ... P80340 27092003
    21 5j8b:8 (2.6) BS01 rna ? GO:0003735 ... Q5SKU1 27092003
    22 5j8b:9 (2.6) BS01 rna ? GO:0003735 ... Q5SHR2 27092003
    23 5j8b:9 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 27092003
    24 5j8b:C (2.6) BS01 rna ? GO:0000049 ... P27150 27092003
    25 5j8b:D (2.6) BS01 rna ? GO:0002181 ... P60405 27092003
    26 5j8b:D (2.6) BS02 rna ? GO:0002181 ... P60405 27092003
    27 5j8b:D (2.6) BS03 MG ? GO:0002181 ... P60405 27092003
    28 5j8b:D (2.6) BS04 MG ? GO:0002181 ... P60405 27092003
    29 5j8b:D (2.6) BS05 MG ? GO:0002181 ... P60405 27092003
    30 5j8b:D (2.6) BS06 MG ? GO:0002181 ... P60405 27092003
    31 5j8b:D (2.6) BS07 MG ? GO:0002181 ... P60405 27092003
    32 5j8b:D (2.6) BS08 MG ? GO:0002181 ... P60405 27092003
    33 5j8b:E (2.6) BS01 rna ? GO:0003735 ... Q5SHN8 27092003
    34 5j8b:E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 27092003
    35 5j8b:E (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 27092003
    36 5j8b:F (2.6) BS01 rna ? GO:0003735 ... Q5SHN9 27092003
    37 5j8b:F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 27092003
    38 5j8b:F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 27092003
    39 5j8b:F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 27092003
    40 5j8b:F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 27092003
    41 5j8b:G (2.6) BS01 rna ? GO:0000049 ... Q5SHQ0 27092003
    42 5j8b:G (2.6) BS02 rna ? GO:0000049 ... Q5SHQ0 27092003
    43 5j8b:G (2.6) BS03 rna ? GO:0000049 ... Q5SHQ0 27092003
    44 5j8b:G (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 27092003
    45 5j8b:H (2.6) BS01 rna N/A GO:0003735 ... N/A 27092003
    46 5j8b:J (2.6) BS01 rna ? GO:0003735 ... Q8VVE3 27092003
    47 5j8b:K (2.6) BS01 rna ? GO:0003735 ... Q5SLP6 27092003
    48 5j8b:N (2.6) BS01 rna ? GO:0003729 ... P60488 27092003
    49 5j8b:N (2.6) BS02 MG ? GO:0003729 ... P60488 27092003
    50 5j8b:O (2.6) BS01 rna ? GO:0003735 ... Q5SHP8 27092003
    51 5j8b:O (2.6) BS02 rna ? GO:0003735 ... Q5SHP8 27092003
    52 5j8b:P (2.6) BS01 rna ? GO:0003735 ... Q5SHQ7 27092003
    53 5j8b:P (2.6) BS02 MG ? GO:0003735 ... Q5SHQ7 27092003
    54 5j8b:Q (2.6) BS01 rna ? GO:0000049 ... P60489 27092003
    55 5j8b:Q (2.6) BS02 rna ? GO:0000049 ... P60489 27092003
    56 5j8b:Q (2.6) BS03 rna ? GO:0000049 ... P60489 27092003
    57 5j8b:Q (2.6) BS04 MG ? GO:0000049 ... P60489 27092003
    58 5j8b:Q (2.6) BS05 MG ? GO:0000049 ... P60489 27092003
    59 5j8b:R (2.6) BS01 rna ? GO:0003735 ... Q9Z9H5 27092003
    60 5j8b:R (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 27092003
    61 5j8b:R (2.6) BS03 MG ? GO:0003735 ... Q9Z9H5 27092003
    62 5j8b:S (2.6) BS01 rna ? GO:0003735 ... Q5SHQ4 27092003
    63 5j8b:S (2.6) BS02 rna ? GO:0003735 ... Q5SHQ4 27092003
    64 5j8b:T (2.6) BS01 rna ? GO:0003735 ... P60490 27092003
    65 5j8b:T (2.6) BS02 rna ? GO:0003735 ... P60490 27092003
    66 5j8b:U (2.6) BS01 rna ? GO:0000027 ... P60491 27092003
    67 5j8b:U (2.6) BS02 MG ? GO:0000027 ... P60491 27092003
    68 5j8b:V (2.6) BS01 rna ? GO:0003723 ... P60492 27092003
    69 5j8b:V (2.6) BS02 MG ? GO:0003723 ... P60492 27092003
    70 5j8b:W (2.6) BS01 rna ? GO:0003735 ... Q5SHP3 27092003
    71 5j8b:W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 27092003
    72 5j8b:X (2.6) BS01 rna ? GO:0000027 ... Q5SHP0 27092003
    73 5j8b:X (2.6) BS02 MG ? GO:0000027 ... Q5SHP0 27092003
    74 5j8b:Y (2.6) BS01 rna ? GO:0003723 ... Q5SHP9 27092003
    75 5j8b:Y (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 27092003
    76 5j8b:Z (2.6) BS01 rna ? GO:0003723 ... Q5SHZ1 27092003
    77 5j8b:b (2.6) BS01 rna ? GO:0003735 ... P80371 27092003
    78 5j8b:c (2.6) BS01 rna ? GO:0003676 ... P80372 27092003
    79 5j8b:d (2.6) BS01 rna ? GO:0003723 ... P80373 27092003
    80 5j8b:d (2.6) BS02 SF4 ? GO:0003723 ... P80373 27092003
    81 5j8b:e (2.6) BS01 rna ? GO:0003723 ... Q5SHQ5 27092003
    82 5j8b:f (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 27092003
    83 5j8b:g (2.6) BS01 rna ? GO:0000028 ... P17291 27092003
    84 5j8b:g (2.6) BS02 rna ? GO:0000028 ... P17291 27092003
    85 5j8b:h (2.6) BS01 rna N/A GO:0003735 ... N/A 27092003
    86 5j8b:i (2.6) BS01 rna ? GO:0000049 ... P80374 27092003
    87 5j8b:i (2.6) BS02 rna ? GO:0000049 ... P80374 27092003
    88 5j8b:j (2.6) BS01 rna ? GO:0000049 ... Q5SHN7 27092003
    89 5j8b:k (2.6) BS01 rna ? GO:0003735 ... P80376 27092003
    90 5j8b:k (2.6) BS02 MG ? GO:0003735 ... P80376 27092003
    91 5j8b:l (2.6) BS01 rna ? GO:0000049 ... Q5SHN3 27092003
    92 5j8b:l (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 27092003
    93 5j8b:l (2.6) BS03 MG ? GO:0000049 ... Q5SHN3 27092003
    94 5j8b:m (2.6) BS01 rna ? GO:0000049 ... P80377 27092003
    95 5j8b:m (2.6) BS02 MG ? GO:0000049 ... P80377 27092003
    96 5j8b:n (2.6) BS01 rna N/A GO:0003735 ... N/A 27092003
    97 5j8b:n (2.6) BS02 MG N/A GO:0003735 ... N/A 27092003
    98 5j8b:n (2.6) BS03 ZN N/A GO:0003735 ... N/A 27092003
    99 5j8b:o (2.6) BS01 rna ? GO:0003735 ... Q5SJ76 27092003
    100 5j8b:o (2.6) BS02 rna ? GO:0003735 ... Q5SJ76 27092003
    101 5j8b:p (2.6) BS01 rna ? GO:0003735 ... Q5SJH3 27092003
    102 5j8b:q (2.6) BS01 rna N/A GO:0003735 ... N/A 27092003
    103 5j8b:r (2.6) BS01 rna ? GO:0003735 ... Q5SLQ0 27092003
    104 5j8b:s (2.6) BS01 rna ? GO:0000028 ... Q5SHP2 27092003
    105 5j8b:t (2.6) BS01 rna ? GO:0003723 ... P80380 27092003
    106 5j8b:z (2.6) BS01 rna 3.6.5.-
    3.6.5.n1    		 GO:0003735 ... Q5SKA7
    Q5SLQ1    		 27092003
    107 5j8b:z (2.6) BS02 rna 3.6.5.-
    3.6.5.n1    		 GO:0003735 ... Q5SKA7
    Q5SLQ1    		 27092003
    108 5j8b:z (2.6) BS03 rna 3.6.5.-
    3.6.5.n1    		 GO:0003735 ... Q5SKA7
    Q5SLQ1    		 27092003
    109 5j8b:z (2.6) BS04 rna 3.6.5.-
    3.6.5.n1    		 GO:0003735 ... Q5SKA7
    Q5SLQ1    		 27092003
    110 5j8b:z (2.6) BS05 MG 3.6.5.-
    3.6.5.n1    		 GO:0003735 ... Q5SKA7
    Q5SLQ1    		 27092003
    111 5j8b:z (2.6) BS06 MG 3.6.5.-
    3.6.5.n1    		 GO:0003735 ... Q5SKA7
    Q5SLQ1    		 27092003
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218