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BioLiP
Download all results in tab-seperated text for 19 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5j4z:AC (5.8) BS01 HEM ? GO:0005739 ... P24959 27654913
    2 5j4z:AC (5.8) BS02 HEM ? GO:0005739 ... P24959 27654913
    3 5j4z:AD (5.8) BS01 HEM N/A GO:0009055 ... N/A 27654913
    4 5j4z:AE (5.8) BS01 FES N/A GO:0008121 ... N/A 27654913
    5 5j4z:AN (5.8) BS01 HEM ? GO:0005739 ... P24959 27654913
    6 5j4z:AO (5.8) BS01 HEM N/A GO:0009055 ... N/A 27654913
    7 5j4z:AP (5.8) BS01 FES N/A GO:0008121 ... N/A 27654913
    8 5j4z:B (5.8) BS01 SF4 N/A N/A N/A 27654913
    9 5j4z:BN (5.8) BS01 HEA 7.1.1.9 GO:0004129 ... O78749 27654913
    10 5j4z:BN (5.8) BS02 HEA 7.1.1.9 GO:0004129 ... O78749 27654913
    11 5j4z:BO (5.8) BS01 CUA 7.1.1.9 GO:0004129 ... O78750 27654913
    12 5j4z:E (5.8) BS01 FES N/A N/A N/A 27654913
    13 5j4z:F (5.8) BS01 SF4 N/A N/A N/A 27654913
    14 5j4z:G (5.8) BS01 SF4 N/A GO:0016020 ... N/A 27654913
    15 5j4z:G (5.8) BS02 SF4 N/A GO:0016020 ... N/A 27654913
    16 5j4z:G (5.8) BS03 FES N/A GO:0016020 ... N/A 27654913
    17 5j4z:H (5.8) BS01 peptide N/A N/A N/A 27654913
    18 5j4z:I (5.8) BS01 SF4 N/A N/A N/A 27654913
    19 5j4z:I (5.8) BS02 SF4 N/A N/A N/A 27654913
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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