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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 251 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5j4d:AA (3.1) BS01 rna ? GO:0003735 ... Q72I22 27107638
    2 5j4d:AA (3.1) BS02 rna ? GO:0003735 ... Q72I22 27107638
    3 5j4d:AB (3.1) BS01 rna ? GO:0003735 ... P62659 27107638
    4 5j4d:AC (3.1) BS01 rna ? GO:0003723 ... Q72I15 27107638
    5 5j4d:AC (3.1) BS02 ZN ? GO:0003723 ... Q72I15 27107638
    6 5j4d:AD (3.1) BS01 rna ? GO:0000049 ... P62655 27107638
    7 5j4d:AD (3.1) BS02 rna ? GO:0000049 ... P62655 27107638
    8 5j4d:BA (3.1) BS01 rna ? GO:0003735 ... Q72JR0 27107638
    9 5j4d:BB (3.1) BS01 rna ? GO:0000028 ... P62660 27107638
    10 5j4d:BB (3.1) BS02 MG ? GO:0000028 ... P62660 27107638
    11 5j4d:BC (3.1) BS01 rna ? GO:0003723 ... Q72IA7 27107638
    12 5j4d:BC (3.1) BS02 rna ? GO:0003723 ... Q72IA7 27107638
    13 5j4d:BC (3.1) BS03 MG ? GO:0003723 ... Q72IA7 27107638
    14 5j4d:BC (3.1) BS04 MG ? GO:0003723 ... Q72IA7 27107638
    15 5j4d:BC (3.1) BS05 MG ? GO:0003723 ... Q72IA7 27107638
    16 5j4d:BD (3.1) BS01 rna ? GO:0003735 ... P62656 27107638
    17 5j4d:CA (3.1) BS01 rna ? GO:0003735 ... P62652 27107638
    18 5j4d:CA (3.1) BS02 ZN ? GO:0003735 ... P62652 27107638
    19 5j4d:CB (3.1) BS01 rna ? GO:0003723 ... P62661 27107638
    20 5j4d:CC (3.1) BS01 rna ? GO:0003735 ... P60493 27107638
    21 5j4d:CC (3.1) BS02 rna ? GO:0003735 ... P60493 27107638
    22 5j4d:CC (3.1) BS03 rna ? GO:0003735 ... P60493 27107638
    23 5j4d:CD (3.1) BS01 rna ? GO:0003735 ... P62657 27107638
    24 5j4d:CD (3.1) BS02 rna ? GO:0003735 ... P62657 27107638
    25 5j4d:CD (3.1) BS03 MG ? GO:0003735 ... P62657 27107638
    26 5j4d:DA (3.1) BS01 rna ? GO:0003735 ... Q72GW3 27107638
    27 5j4d:DA (3.1) BS02 ZN ? GO:0003735 ... Q72GW3 27107638
    28 5j4d:DA (3.1) BS03 MG ? GO:0003735 ... Q72GW3 27107638
    29 5j4d:DC (3.1) BS01 rna ? GO:0003735 ... Q72G84 27107638
    30 5j4d:DC (3.1) BS02 rna ? GO:0003735 ... Q72G84 27107638
    31 5j4d:DC (3.1) BS03 MG ? GO:0003735 ... Q72G84 27107638
    32 5j4d:DD (3.1) BS01 rna ? GO:0003735 ... P62238 27107638
    33 5j4d:E (3.1) BS01 rna ? GO:0002181 ... Q72I07 27107638
    34 5j4d:E (3.1) BS02 MG ? GO:0002181 ... Q72I07 27107638
    35 5j4d:E (3.1) BS03 MG ? GO:0002181 ... Q72I07 27107638
    36 5j4d:E (3.1) BS04 MG ? GO:0002181 ... Q72I07 27107638
    37 5j4d:E (3.1) BS05 MG ? GO:0002181 ... Q72I07 27107638
    38 5j4d:EA (3.1) BS01 rna ? GO:0003735 ... P80340 27107638
    39 5j4d:EC (3.1) BS01 rna ? GO:0003735 ... Q72I12 27107638
    40 5j4d:EC (3.1) BS02 MG ? GO:0003735 ... Q72I12 27107638
    41 5j4d:ED (3.1) BS01 rna ? GO:0003735 ... P62658 27107638
    42 5j4d:ED (3.1) BS02 MG ? GO:0003735 ... P62658 27107638
    43 5j4d:F (3.1) BS01 rna ? GO:0003735 ... Q72I04 27107638
    44 5j4d:F (3.1) BS02 MG ? GO:0003735 ... Q72I04 27107638
    45 5j4d:F (3.1) BS03 MG ? GO:0003735 ... Q72I04 27107638
    46 5j4d:F (3.1) BS04 MG ? GO:0003735 ... Q72I04 27107638
    47 5j4d:F (3.1) BS05 MG ? GO:0003735 ... Q72I04 27107638
    48 5j4d:F (3.1) BS06 MG ? GO:0003735 ... Q72I04 27107638
    49 5j4d:F (3.1) BS07 MG ? GO:0003735 ... Q72I04 27107638
    50 5j4d:F (3.1) BS08 MG ? GO:0003735 ... Q72I04 27107638
    51 5j4d:FA (3.1) BS01 rna ? GO:0003735 ... Q72L77 27107638
    52 5j4d:FA (3.1) BS02 MG ? GO:0003735 ... Q72L77 27107638
    53 5j4d:FA (3.1) BS03 MG ? GO:0003735 ... Q72L77 27107638
    54 5j4d:FA (3.1) BS04 MG ? GO:0003735 ... Q72L77 27107638
    55 5j4d:FA (3.1) BS05 MG ? GO:0003735 ... Q72L77 27107638
    56 5j4d:FC (3.1) BS01 rna ? GO:0003735 ... Q72I22 27107638
    57 5j4d:FC (3.1) BS02 rna ? GO:0003735 ... Q72I22 27107638
    58 5j4d:FD (3.1) BS01 rna ? GO:0003735 ... P62659 27107638
    59 5j4d:G (3.1) BS01 rna ? GO:0003735 ... Q72I05 27107638
    60 5j4d:G (3.1) BS02 MG ? GO:0003735 ... Q72I05 27107638
    61 5j4d:G (3.1) BS03 MG ? GO:0003735 ... Q72I05 27107638
    62 5j4d:G (3.1) BS04 MG ? GO:0003735 ... Q72I05 27107638
    63 5j4d:G (3.1) BS05 MG ? GO:0003735 ... Q72I05 27107638
    64 5j4d:GA (3.1) BS01 rna ? GO:0003735 ... Q72I28 27107638
    65 5j4d:GA (3.1) BS02 ZN ? GO:0003735 ... Q72I28 27107638
    66 5j4d:GC (3.1) BS01 rna ? GO:0003735 ... Q72JR0 27107638
    67 5j4d:GD (3.1) BS01 rna ? GO:0000028 ... P62660 27107638
    68 5j4d:H (3.1) BS01 rna ? GO:0000049 ... Q72I16 27107638
    69 5j4d:H (3.1) BS02 rna ? GO:0000049 ... Q72I16 27107638
    70 5j4d:H (3.1) BS03 rna ? GO:0000049 ... Q72I16 27107638
    71 5j4d:H (3.1) BS04 MG ? GO:0000049 ... Q72I16 27107638
    72 5j4d:H (3.1) BS05 MG ? GO:0000049 ... Q72I16 27107638
    73 5j4d:HC (3.1) BS01 rna ? GO:0003735 ... P62652 27107638
    74 5j4d:HC (3.1) BS02 ZN ? GO:0003735 ... P62652 27107638
    75 5j4d:HD (3.1) BS01 rna ? GO:0003723 ... P62661 27107638
    76 5j4d:HD (3.1) BS02 MG ? GO:0003723 ... P62661 27107638
    77 5j4d:I (3.1) BS01 rna ? GO:0002181 ... Q72I19 27107638
    78 5j4d:I (3.1) BS02 MG ? GO:0002181 ... Q72I19 27107638
    79 5j4d:I (3.1) BS03 MG ? GO:0002181 ... Q72I19 27107638
    80 5j4d:IC (3.1) BS01 rna ? GO:0003735 ... Q72GW3 27107638
    81 5j4d:IC (3.1) BS02 ZN ? GO:0003735 ... Q72GW3 27107638
    82 5j4d:J (3.1) BS01 rna ? GO:0003735 ... Q72GV5 27107638
    83 5j4d:J (3.1) BS02 MG ? GO:0003735 ... Q72GV5 27107638
    84 5j4d:JA (3.1) BS01 rna ? GO:0003747 ... P0A7I0 27107638
    85 5j4d:JA (3.1) BS02 rna ? GO:0003747 ... P0A7I0 27107638
    86 5j4d:JA (3.1) BS03 rna ? GO:0003747 ... P0A7I0 27107638
    87 5j4d:JA (3.1) BS04 rna ? GO:0003747 ... P0A7I0 27107638
    88 5j4d:JA (3.1) BS05 MG ? GO:0003747 ... P0A7I0 27107638
    89 5j4d:JA (3.1) BS06 MG ? GO:0003747 ... P0A7I0 27107638
    90 5j4d:JB (3.1) BS01 rna ? GO:0002181 ... Q72I07 27107638
    91 5j4d:JB (3.1) BS02 rna ? GO:0002181 ... Q72I07 27107638
    92 5j4d:JB (3.1) BS03 MG ? GO:0002181 ... Q72I07 27107638
    93 5j4d:JB (3.1) BS04 MG ? GO:0002181 ... Q72I07 27107638
    94 5j4d:JB (3.1) BS05 MG ? GO:0002181 ... Q72I07 27107638
    95 5j4d:JB (3.1) BS06 MG ? GO:0002181 ... Q72I07 27107638
    96 5j4d:JB (3.1) BS07 MG ? GO:0002181 ... Q72I07 27107638
    97 5j4d:JC (3.1) BS01 rna ? GO:0003735 ... P80340 27107638
    98 5j4d:K (3.1) BS01 rna ? GO:0003729 ... Q72IN1 27107638
    99 5j4d:K (3.1) BS02 MG ? GO:0003729 ... Q72IN1 27107638
    100 5j4d:K (3.1) BS03 MG ? GO:0003729 ... Q72IN1 27107638
    101 5j4d:K (3.1) BS04 MG ? GO:0003729 ... Q72IN1 27107638
    102 5j4d:KA (3.1) BS01 rna ? GO:0003735 ... P62662 27107638
    103 5j4d:KB (3.1) BS01 rna ? GO:0003735 ... Q72I04 27107638
    104 5j4d:KB (3.1) BS02 MG ? GO:0003735 ... Q72I04 27107638
    105 5j4d:KB (3.1) BS03 MG ? GO:0003735 ... Q72I04 27107638
    106 5j4d:KB (3.1) BS04 MG ? GO:0003735 ... Q72I04 27107638
    107 5j4d:KC (3.1) BS01 rna ? GO:0003735 ... Q72L77 27107638
    108 5j4d:KC (3.1) BS02 MG ? GO:0003735 ... Q72L77 27107638
    109 5j4d:KC (3.1) BS03 MG ? GO:0003735 ... Q72L77 27107638
    110 5j4d:L (3.1) BS01 rna ? GO:0003735 ... Q72I14 27107638
    111 5j4d:L (3.1) BS02 rna ? GO:0003735 ... Q72I14 27107638
    112 5j4d:L (3.1) BS03 MG ? GO:0003735 ... Q72I14 27107638
    113 5j4d:L (3.1) BS04 MG ? GO:0003735 ... Q72I14 27107638
    114 5j4d:L (3.1) BS05 MG ? GO:0003735 ... Q72I14 27107638
    115 5j4d:LA (3.1) BS01 rna ? GO:0003676 ... P62663 27107638
    116 5j4d:LA (3.1) BS02 MG ? GO:0003676 ... P62663 27107638
    117 5j4d:LB (3.1) BS01 rna ? GO:0003735 ... Q72I05 27107638
    118 5j4d:LB (3.1) BS02 MG ? GO:0003735 ... Q72I05 27107638
    119 5j4d:LB (3.1) BS03 MG ? GO:0003735 ... Q72I05 27107638
    120 5j4d:LB (3.1) BS04 MG ? GO:0003735 ... Q72I05 27107638
    121 5j4d:LC (3.1) BS01 rna ? GO:0003735 ... Q72I28 27107638
    122 5j4d:LC (3.1) BS02 ZN ? GO:0003735 ... Q72I28 27107638
    123 5j4d:M (3.1) BS01 rna ? GO:0003735 ... Q72I23 27107638
    124 5j4d:M (3.1) BS02 rna ? GO:0003735 ... Q72I23 27107638
    125 5j4d:M (3.1) BS03 MG ? GO:0003735 ... Q72I23 27107638
    126 5j4d:M (3.1) BS04 MG ? GO:0003735 ... Q72I23 27107638
    127 5j4d:M (3.1) BS05 MG ? GO:0003735 ... Q72I23 27107638
    128 5j4d:M (3.1) BS06 MG ? GO:0003735 ... Q72I23 27107638
    129 5j4d:M (3.1) BS07 MG ? GO:0003735 ... Q72I23 27107638
    130 5j4d:MA (3.1) BS01 rna ? GO:0003723 ... P62664 27107638
    131 5j4d:MA (3.1) BS02 MG ? GO:0003723 ... P62664 27107638
    132 5j4d:MA (3.1) BS03 MG ? GO:0003723 ... P62664 27107638
    133 5j4d:MB (3.1) BS01 rna ? GO:0000049 ... Q72I16 27107638
    134 5j4d:MB (3.1) BS02 rna ? GO:0000049 ... Q72I16 27107638
    135 5j4d:MB (3.1) BS03 rna ? GO:0000049 ... Q72I16 27107638
    136 5j4d:MB (3.1) BS04 MG ? GO:0000049 ... Q72I16 27107638
    137 5j4d:N (3.1) BS01 rna ? GO:0000049 ... Q72I11 27107638
    138 5j4d:N (3.1) BS02 MG ? GO:0000049 ... Q72I11 27107638
    139 5j4d:N (3.1) BS03 MG ? GO:0000049 ... Q72I11 27107638
    140 5j4d:NA (3.1) BS01 rna ? GO:0003723 ... P62665 27107638
    141 5j4d:NB (3.1) BS01 rna ? GO:0002181 ... Q72I19 27107638
    142 5j4d:O (3.1) BS01 rna ? GO:0003735 ... Q72I33 27107638
    143 5j4d:O (3.1) BS02 MG ? GO:0003735 ... Q72I33 27107638
    144 5j4d:O (3.1) BS03 MG ? GO:0003735 ... Q72I33 27107638
    145 5j4d:OA (3.1) BS01 rna ? GO:0003735 ... P62666 27107638
    146 5j4d:OA (3.1) BS02 MG ? GO:0003735 ... P62666 27107638
    147 5j4d:OB (3.1) BS01 rna ? GO:0003735 ... Q72GV5 27107638
    148 5j4d:OC (3.1) BS01 rna ? GO:0003747 ... P0A7I0 27107638
    149 5j4d:OC (3.1) BS02 rna ? GO:0003747 ... P0A7I0 27107638
    150 5j4d:OC (3.1) BS03 rna ? GO:0003747 ... P0A7I0 27107638
    151 5j4d:OC (3.1) BS04 rna ? GO:0003747 ... P0A7I0 27107638
    152 5j4d:OC (3.1) BS05 MG ? GO:0003747 ... P0A7I0 27107638
    153 5j4d:P (3.1) BS01 rna ? GO:0003735 ... Q72I20 27107638
    154 5j4d:P (3.1) BS02 rna ? GO:0003735 ... Q72I20 27107638
    155 5j4d:PA (3.1) BS01 rna ? GO:0000028 ... P62667 27107638
    156 5j4d:PA (3.1) BS02 rna ? GO:0000028 ... P62667 27107638
    157 5j4d:PB (3.1) BS01 rna ? GO:0003729 ... Q72IN1 27107638
    158 5j4d:PB (3.1) BS02 MG ? GO:0003729 ... Q72IN1 27107638
    159 5j4d:PB (3.1) BS03 MG ? GO:0003729 ... Q72IN1 27107638
    160 5j4d:PC (3.1) BS01 rna ? GO:0003735 ... P62662 27107638
    161 5j4d:Q (3.1) BS01 rna ? GO:0003735 ... Q72JU9 27107638
    162 5j4d:Q (3.1) BS02 rna ? GO:0003735 ... Q72JU9 27107638
    163 5j4d:Q (3.1) BS03 MG ? GO:0003735 ... Q72JU9 27107638
    164 5j4d:QA (3.1) BS01 rna ? GO:0003735 ... P62668 27107638
    165 5j4d:QA (3.1) BS02 MG ? GO:0003735 ... P62668 27107638
    166 5j4d:QB (3.1) BS01 rna ? GO:0003735 ... Q72I14 27107638
    167 5j4d:QB (3.1) BS02 rna ? GO:0003735 ... Q72I14 27107638
    168 5j4d:QB (3.1) BS03 MG ? GO:0003735 ... Q72I14 27107638
    169 5j4d:QB (3.1) BS04 MG ? GO:0003735 ... Q72I14 27107638
    170 5j4d:QB (3.1) BS05 MG ? GO:0003735 ... Q72I14 27107638
    171 5j4d:QC (3.1) BS01 rna ? GO:0003676 ... P62663 27107638
    172 5j4d:QC (3.1) BS02 MG ? GO:0003676 ... P62663 27107638
    173 5j4d:R (3.1) BS01 rna ? GO:0000027 ... Q72L76 27107638
    174 5j4d:R (3.1) BS02 MG ? GO:0000027 ... Q72L76 27107638
    175 5j4d:RA (3.1) BS01 rna ? GO:0000049 ... P62669 27107638
    176 5j4d:RA (3.1) BS02 rna ? GO:0000049 ... P62669 27107638
    177 5j4d:RB (3.1) BS01 rna ? GO:0003735 ... Q72I23 27107638
    178 5j4d:RB (3.1) BS02 MG ? GO:0003735 ... Q72I23 27107638
    179 5j4d:RB (3.1) BS03 MG ? GO:0003735 ... Q72I23 27107638
    180 5j4d:RB (3.1) BS04 MG ? GO:0003735 ... Q72I23 27107638
    181 5j4d:RC (3.1) BS01 rna ? GO:0003723 ... P62664 27107638
    182 5j4d:RC (3.1) BS02 MG ? GO:0003723 ... P62664 27107638
    183 5j4d:RC (3.1) BS03 MG ? GO:0003723 ... P62664 27107638
    184 5j4d:RC (3.1) BS04 MG ? GO:0003723 ... P62664 27107638
    185 5j4d:RC (3.1) BS05 MG ? GO:0003723 ... P62664 27107638
    186 5j4d:S (3.1) BS01 rna ? GO:0003723 ... Q72HR2 27107638
    187 5j4d:S (3.1) BS02 MG ? GO:0003723 ... Q72HR2 27107638
    188 5j4d:SA (3.1) BS01 rna ? GO:0000049 ... P62653 27107638
    189 5j4d:SA (3.1) BS02 MG ? GO:0000049 ... P62653 27107638
    190 5j4d:SA (3.1) BS03 MG ? GO:0000049 ... P62653 27107638
    191 5j4d:SB (3.1) BS01 rna ? GO:0000049 ... Q72I11 27107638
    192 5j4d:SB (3.1) BS02 MG ? GO:0000049 ... Q72I11 27107638
    193 5j4d:SC (3.1) BS01 rna ? GO:0003723 ... P62665 27107638
    194 5j4d:SC (3.1) BS02 MG ? GO:0003723 ... P62665 27107638
    195 5j4d:T (3.1) BS01 rna ? GO:0003735 ... Q72I09 27107638
    196 5j4d:T (3.1) BS02 MG ? GO:0003735 ... Q72I09 27107638
    197 5j4d:TA (3.1) BS01 rna ? GO:0003735 ... P62654 27107638
    198 5j4d:TB (3.1) BS01 rna ? GO:0003735 ... Q72I33 27107638
    199 5j4d:TB (3.1) BS02 MG ? GO:0003735 ... Q72I33 27107638
    200 5j4d:TC (3.1) BS01 rna ? GO:0003735 ... P62666 27107638
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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