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BioLiP
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5ipm:C (4.2) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 27035955
    2 5ipm:C (4.2) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 27035955
    3 5ipm:C (4.2) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 27035955
    4 5ipm:D (4.2) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 27035955
    5 5ipm:D (4.2) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 27035955
    6 5ipm:D (4.2) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 27035955
    7 5ipm:D (4.2) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 27035955
    8 5ipm:D (4.2) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 27035955
    9 5ipm:D (4.2) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 27035955
    10 5ipm:F (4.2) BS01 dna ? GO:0000345 ... P13445 27035955
    11 5ipm:F (4.2) BS02 dna ? GO:0000345 ... P13445 27035955
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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