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BioLiP
Download all results in tab-seperated text for 65 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5imr:1 (5.7) BS01 rna ? GO:0003735 ... Q5SHR2 27137929
    2 5imr:2 (5.7) BS01 rna ? GO:0003735 ... Q8VVE3 27137929
    3 5imr:3 (5.7) BS01 rna ? GO:0003735 ... Q5SLP6 27137929
    4 5imr:C (5.7) BS01 rna 3.6.5.n1 GO:0003746 ... Q5SKA7 27137929
    5 5imr:C (5.7) BS02 rna 3.6.5.n1 GO:0003746 ... Q5SKA7 27137929
    6 5imr:C (5.7) BS03 rna 3.6.5.n1 GO:0003746 ... Q5SKA7 27137929
    7 5imr:F (5.7) BS01 rna ? GO:0003735 ... P80371 27137929
    8 5imr:G (5.7) BS01 rna ? GO:0003676 ... P80372 27137929
    9 5imr:H (5.7) BS01 rna ? GO:0003723 ... P80373 27137929
    10 5imr:I (5.7) BS01 rna ? GO:0003723 ... Q5SHQ5 27137929
    11 5imr:J (5.7) BS01 rna ? GO:0003735 ... Q5SLP8 27137929
    12 5imr:K (5.7) BS01 rna ? GO:0000028 ... P17291 27137929
    13 5imr:L (5.7) BS01 rna N/A GO:0003735 ... N/A 27137929
    14 5imr:M (5.7) BS01 rna ? GO:0000049 ... P80374 27137929
    15 5imr:M (5.7) BS02 rna ? GO:0000049 ... P80374 27137929
    16 5imr:N (5.7) BS01 rna ? GO:0000049 ... Q5SHN7 27137929
    17 5imr:O (5.7) BS01 rna ? GO:0003735 ... P80376 27137929
    18 5imr:P (5.7) BS01 rna ? GO:0000049 ... Q5SHN3 27137929
    19 5imr:Q (5.7) BS01 rna ? GO:0000049 ... P80377 27137929
    20 5imr:R (5.7) BS01 rna N/A GO:0003735 ... N/A 27137929
    21 5imr:S (5.7) BS01 rna ? GO:0003735 ... Q5SJ76 27137929
    22 5imr:S (5.7) BS02 rna ? GO:0003735 ... Q5SJ76 27137929
    23 5imr:T (5.7) BS01 rna ? GO:0003735 ... Q5SJH3 27137929
    24 5imr:U (5.7) BS01 rna ? GO:0003735 ... P24321 27137929
    25 5imr:V (5.7) BS01 rna ? GO:0003735 ... P80382 27137929
    26 5imr:W (5.7) BS01 rna ? GO:0000028 ... Q5SHP2 27137929
    27 5imr:X (5.7) BS01 rna ? GO:0003723 ... P80380 27137929
    28 5imr:Z (5.7) BS01 rna ? GO:0000049 ... P27150 27137929
    29 5imr:Z (5.7) BS02 rna ? GO:0000049 ... P27150 27137929
    30 5imr:a (5.7) BS01 rna ? GO:0002181 ... P60405 27137929
    31 5imr:b (5.7) BS01 rna ? GO:0003735 ... Q5SHN8 27137929
    32 5imr:c (5.7) BS01 rna ? GO:0003735 ... Q5SHN9 27137929
    33 5imr:d (5.7) BS01 rna ? GO:0000049 ... Q5SHQ0 27137929
    34 5imr:d (5.7) BS02 rna ? GO:0000049 ... Q5SHQ0 27137929
    35 5imr:d (5.7) BS03 rna ? GO:0000049 ... Q5SHQ0 27137929
    36 5imr:e (5.7) BS01 rna N/A GO:0003735 ... N/A 27137929
    37 5imr:f (5.7) BS01 rna ? GO:0003729 ... P60488 27137929
    38 5imr:g (5.7) BS01 rna ? GO:0003735 ... P60558 27137929
    39 5imr:h (5.7) BS01 rna ? GO:0003735 ... Q5SHQ7 27137929
    40 5imr:i (5.7) BS01 rna ? GO:0000049 ... P60489 27137929
    41 5imr:i (5.7) BS02 rna ? GO:0000049 ... P60489 27137929
    42 5imr:j (5.7) BS01 rna ? GO:0003735 ... Q9Z9H5 27137929
    43 5imr:k (5.7) BS01 rna ? GO:0003735 ... Q5SHQ4 27137929
    44 5imr:k (5.7) BS02 rna ? GO:0003735 ... Q5SHQ4 27137929
    45 5imr:l (5.7) BS01 rna ? GO:0003735 ... P60490 27137929
    46 5imr:l (5.7) BS02 rna ? GO:0003735 ... P60490 27137929
    47 5imr:m (5.7) BS01 rna ? GO:0000027 ... P60491 27137929
    48 5imr:n (5.7) BS01 rna ? GO:0003723 ... P60492 27137929
    49 5imr:o (5.7) BS01 rna ? GO:0003735 ... Q5SHP3 27137929
    50 5imr:p (5.7) BS01 rna ? GO:0000027 ... Q5SHP0 27137929
    51 5imr:q (5.7) BS01 rna ? GO:0003723 ... Q5SHP9 27137929
    52 5imr:r (5.7) BS01 rna ? GO:0003723 ... Q5SHZ1 27137929
    53 5imr:r (5.7) BS02 rna ? GO:0003723 ... Q5SHZ1 27137929
    54 5imr:s (5.7) BS01 rna ? GO:0003735 ... P60493 27137929
    55 5imr:s (5.7) BS02 rna ? GO:0003735 ... P60493 27137929
    56 5imr:s (5.7) BS03 rna ? GO:0003735 ... P60493 27137929
    57 5imr:t (5.7) BS01 rna ? GO:0003735 ... Q9LCY4 27137929
    58 5imr:u (5.7) BS01 rna ? GO:0003735 ... Q5SHQ6 27137929
    59 5imr:u (5.7) BS02 rna ? GO:0003735 ... Q5SHQ6 27137929
    60 5imr:v (5.7) BS01 rna ? GO:0003735 ... Q5SJE1 27137929
    61 5imr:v (5.7) BS02 rna ? GO:0003735 ... Q5SJE1 27137929
    62 5imr:w (5.7) BS01 rna ? GO:0003735 ... P80339 27137929
    63 5imr:x (5.7) BS01 rna ? GO:0000049 ... P35871 27137929
    64 5imr:y (5.7) BS01 rna ? GO:0003735 ... P80340 27137929
    65 5imr:z (5.7) BS01 rna ? GO:0003735 ... Q5SKU1 27137929
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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