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BioLiP
Download all results in tab-seperated text for 137 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5ib8:11 (3.13) BS01 rna ? GO:0002181 ... P60405 27174928
    2 5ib8:11 (3.13) BS02 MG ? GO:0002181 ... P60405 27174928
    3 5ib8:12 (3.13) BS01 rna ? GO:0003735 ... P80371 27174928
    4 5ib8:15 (3.13) BS01 rna ? GO:0003729 ... P60488 27174928
    5 5ib8:19 (3.13) BS01 rna ? GO:0002181 ... P60405 27174928
    6 5ib8:19 (3.13) BS02 MG ? GO:0002181 ... P60405 27174928
    7 5ib8:1A (3.13) BS01 rna ? GO:0000049 ... Q5SHN7 27174928
    8 5ib8:1E (3.13) BS01 rna ? GO:0003735 ... P80371 27174928
    9 5ib8:1I (3.13) BS01 rna ? GO:0000049 ... Q5SHN7 27174928
    10 5ib8:21 (3.13) BS01 rna ? GO:0003735 ... Q5SHN8 27174928
    11 5ib8:21 (3.13) BS02 MG ? GO:0003735 ... Q5SHN8 27174928
    12 5ib8:22 (3.13) BS01 rna ? GO:0003676 ... P80372 27174928
    13 5ib8:22 (3.13) BS02 rna ? GO:0003676 ... P80372 27174928
    14 5ib8:25 (3.13) BS01 rna ? GO:0003735 ... Q5SHP8 27174928
    15 5ib8:25 (3.13) BS02 rna ? GO:0003735 ... Q5SHP8 27174928
    16 5ib8:29 (3.13) BS01 rna ? GO:0003735 ... Q5SHN8 27174928
    17 5ib8:2A (3.13) BS01 rna ? GO:0003735 ... P80376 27174928
    18 5ib8:2A (3.13) BS02 MG ? GO:0003735 ... P80376 27174928
    19 5ib8:2E (3.13) BS01 rna ? GO:0003676 ... P80372 27174928
    20 5ib8:2I (3.13) BS01 rna ? GO:0003735 ... P80376 27174928
    21 5ib8:2I (3.13) BS02 MG ? GO:0003735 ... P80376 27174928
    22 5ib8:31 (3.13) BS01 rna ? GO:0003735 ... Q5SHN9 27174928
    23 5ib8:31 (3.13) BS02 MG ? GO:0003735 ... Q5SHN9 27174928
    24 5ib8:32 (3.13) BS01 rna ? GO:0003723 ... P80373 27174928
    25 5ib8:32 (3.13) BS02 SF4 ? GO:0003723 ... P80373 27174928
    26 5ib8:35 (3.13) BS01 rna ? GO:0003735 ... Q5SHQ7 27174928
    27 5ib8:39 (3.13) BS01 rna ? GO:0003735 ... Q5SHN9 27174928
    28 5ib8:39 (3.13) BS02 MG ? GO:0003735 ... Q5SHN9 27174928
    29 5ib8:39 (3.13) BS03 MG ? GO:0003735 ... Q5SHN9 27174928
    30 5ib8:3A (3.13) BS01 rna ? GO:0000049 ... Q5SHN3 27174928
    31 5ib8:3E (3.13) BS01 rna ? GO:0003723 ... P80373 27174928
    32 5ib8:3E (3.13) BS02 SF4 ? GO:0003723 ... P80373 27174928
    33 5ib8:3I (3.13) BS01 rna ? GO:0000049 ... Q5SHN3 27174928
    34 5ib8:3I (3.13) BS02 MG ? GO:0000049 ... Q5SHN3 27174928
    35 5ib8:41 (3.13) BS01 rna ? GO:0000049 ... Q5SHQ0 27174928
    36 5ib8:41 (3.13) BS02 rna ? GO:0000049 ... Q5SHQ0 27174928
    37 5ib8:41 (3.13) BS03 MG ? GO:0000049 ... Q5SHQ0 27174928
    38 5ib8:42 (3.13) BS01 rna ? GO:0003723 ... Q5SHQ5 27174928
    39 5ib8:42 (3.13) BS02 rna ? GO:0003723 ... Q5SHQ5 27174928
    40 5ib8:42 (3.13) BS03 MG ? GO:0003723 ... Q5SHQ5 27174928
    41 5ib8:45 (3.13) BS01 rna ? GO:0000049 ... P60489 27174928
    42 5ib8:45 (3.13) BS02 rna ? GO:0000049 ... P60489 27174928
    43 5ib8:45 (3.13) BS03 rna ? GO:0000049 ... P60489 27174928
    44 5ib8:45 (3.13) BS04 MG ? GO:0000049 ... P60489 27174928
    45 5ib8:49 (3.13) BS01 rna ? GO:0000049 ... Q5SHQ0 27174928
    46 5ib8:49 (3.13) BS02 rna ? GO:0000049 ... Q5SHQ0 27174928
    47 5ib8:49 (3.13) BS03 rna ? GO:0000049 ... Q5SHQ0 27174928
    48 5ib8:4A (3.13) BS01 rna ? GO:0000049 ... P80377 27174928
    49 5ib8:4E (3.13) BS01 rna ? GO:0003723 ... Q5SHQ5 27174928
    50 5ib8:4E (3.13) BS02 rna ? GO:0003723 ... Q5SHQ5 27174928
    51 5ib8:4I (3.13) BS01 rna ? GO:0000049 ... P80377 27174928
    52 5ib8:51 (3.13) BS01 rna N/A GO:0003735 ... N/A 27174928
    53 5ib8:52 (3.13) BS01 rna ? GO:0003735 ... Q5SLP8 27174928
    54 5ib8:55 (3.13) BS01 rna ? GO:0003735 ... Q9Z9H5 27174928
    55 5ib8:58 (3.13) BS01 rna ? GO:0003729 ... P60488 27174928
    56 5ib8:59 (3.13) BS01 rna N/A GO:0003735 ... N/A 27174928
    57 5ib8:5A (3.13) BS01 rna N/A GO:0003735 ... N/A 27174928
    58 5ib8:5E (3.13) BS01 rna ? GO:0003735 ... Q5SLP8 27174928
    59 5ib8:5I (3.13) BS01 rna N/A GO:0003735 ... N/A 27174928
    60 5ib8:5I (3.13) BS02 ZN N/A GO:0003735 ... N/A 27174928
    61 5ib8:61 (3.13) BS01 rna ? GO:0003735 ... Q5SLQ1 27174928
    62 5ib8:62 (3.13) BS01 rna ? GO:0000028 ... P17291 27174928
    63 5ib8:65 (3.13) BS01 rna ? GO:0003735 ... Q5SHQ4 27174928
    64 5ib8:65 (3.13) BS02 rna ? GO:0003735 ... Q5SHQ4 27174928
    65 5ib8:68 (3.13) BS01 rna ? GO:0003735 ... Q5SHP8 27174928
    66 5ib8:68 (3.13) BS02 rna ? GO:0003735 ... Q5SHP8 27174928
    67 5ib8:69 (3.13) BS01 rna ? GO:0003735 ... Q5SLQ1 27174928
    68 5ib8:69 (3.13) BS02 rna ? GO:0003735 ... Q5SLQ1 27174928
    69 5ib8:6A (3.13) BS01 rna ? GO:0003735 ... Q5SJ76 27174928
    70 5ib8:6A (3.13) BS02 rna ? GO:0003735 ... Q5SJ76 27174928
    71 5ib8:6E (3.13) BS01 rna ? GO:0000028 ... P17291 27174928
    72 5ib8:6E (3.13) BS02 rna ? GO:0000028 ... P17291 27174928
    73 5ib8:6I (3.13) BS01 rna ? GO:0003735 ... Q5SJ76 27174928
    74 5ib8:6I (3.13) BS02 rna ? GO:0003735 ... Q5SJ76 27174928
    75 5ib8:71 (3.13) BS01 rna ? GO:0000049 ... P27150 27174928
    76 5ib8:71 (3.13) BS02 rna ? GO:0000049 ... P27150 27174928
    77 5ib8:72 (3.13) BS01 rna N/A GO:0003735 ... N/A 27174928
    78 5ib8:75 (3.13) BS01 rna ? GO:0003735 ... P60490 27174928
    79 5ib8:75 (3.13) BS02 rna ? GO:0003735 ... P60490 27174928
    80 5ib8:78 (3.13) BS01 rna ? GO:0003735 ... Q5SHQ7 27174928
    81 5ib8:7A (3.13) BS01 rna ? GO:0003735 ... Q5SJH3 27174928
    82 5ib8:7E (3.13) BS01 rna N/A GO:0003735 ... N/A 27174928
    83 5ib8:7I (3.13) BS01 rna ? GO:0003735 ... Q5SJH3 27174928
    84 5ib8:82 (3.13) BS01 rna ? GO:0000049 ... P80374 27174928
    85 5ib8:85 (3.13) BS01 rna ? GO:0000027 ... P60491 27174928
    86 5ib8:88 (3.13) BS01 rna ? GO:0000049 ... P60489 27174928
    87 5ib8:88 (3.13) BS02 rna ? GO:0000049 ... P60489 27174928
    88 5ib8:88 (3.13) BS03 rna ? GO:0000049 ... P60489 27174928
    89 5ib8:8A (3.13) BS01 rna N/A GO:0003735 ... N/A 27174928
    90 5ib8:8E (3.13) BS01 rna ? GO:0000049 ... P80374 27174928
    91 5ib8:8E (3.13) BS02 rna ? GO:0000049 ... P80374 27174928
    92 5ib8:8I (3.13) BS01 rna N/A GO:0003735 ... N/A 27174928
    93 5ib8:95 (3.13) BS01 rna ? GO:0003723 ... P60492 27174928
    94 5ib8:98 (3.13) BS01 rna ? GO:0003735 ... Q9Z9H5 27174928
    95 5ib8:9A (3.13) BS01 rna ? GO:0003735 ... Q5SLQ0 27174928
    96 5ib8:9I (3.13) BS01 rna ? GO:0003735 ... Q5SLQ0 27174928
    97 5ib8:A5 (3.13) BS01 rna ? GO:0003735 ... Q5SHP3 27174928
    98 5ib8:A8 (3.13) BS01 rna ? GO:0003735 ... Q5SHQ4 27174928
    99 5ib8:A8 (3.13) BS02 rna ? GO:0003735 ... Q5SHQ4 27174928
    100 5ib8:AA (3.13) BS01 rna ? GO:0000028 ... Q5SHP2 27174928
    101 5ib8:AI (3.13) BS01 rna ? GO:0000028 ... Q5SHP2 27174928
    102 5ib8:B5 (3.13) BS01 rna ? GO:0000027 ... Q5SHP0 27174928
    103 5ib8:B5 (3.13) BS02 MG ? GO:0000027 ... Q5SHP0 27174928
    104 5ib8:B8 (3.13) BS01 rna ? GO:0003735 ... P60490 27174928
    105 5ib8:B8 (3.13) BS02 rna ? GO:0003735 ... P60490 27174928
    106 5ib8:BA (3.13) BS01 rna ? GO:0003723 ... P80380 27174928
    107 5ib8:BI (3.13) BS01 rna ? GO:0003723 ... P80380 27174928
    108 5ib8:C5 (3.13) BS01 rna ? GO:0003723 ... Q5SHP9 27174928
    109 5ib8:C8 (3.13) BS01 rna ? GO:0000027 ... P60491 27174928
    110 5ib8:D5 (3.13) BS01 rna ? GO:0003723 ... Q5SHZ1 27174928
    111 5ib8:D5 (3.13) BS02 rna ? GO:0003723 ... Q5SHZ1 27174928
    112 5ib8:D8 (3.13) BS01 rna ? GO:0003723 ... P60492 27174928
    113 5ib8:E5 (3.13) BS01 rna ? GO:0003735 ... P60493 27174928
    114 5ib8:E5 (3.13) BS02 rna ? GO:0003735 ... P60493 27174928
    115 5ib8:E5 (3.13) BS03 rna ? GO:0003735 ... P60493 27174928
    116 5ib8:E8 (3.13) BS01 rna ? GO:0003735 ... Q5SHP3 27174928
    117 5ib8:F5 (3.13) BS01 rna ? GO:0003735 ... P60494 27174928
    118 5ib8:F8 (3.13) BS01 rna ? GO:0000027 ... Q5SHP0 27174928
    119 5ib8:G5 (3.13) BS01 rna ? GO:0003735 ... Q5SHP6 27174928
    120 5ib8:G8 (3.13) BS01 rna ? GO:0003723 ... Q5SHP9 27174928
    121 5ib8:H5 (3.13) BS01 rna ? GO:0003735 ... Q5SHQ6 27174928
    122 5ib8:H5 (3.13) BS02 rna ? GO:0003735 ... Q5SHQ6 27174928
    123 5ib8:H8 (3.13) BS01 rna ? GO:0003723 ... Q5SHZ1 27174928
    124 5ib8:I8 (3.13) BS01 rna ? GO:0003735 ... P60493 27174928
    125 5ib8:I8 (3.13) BS02 rna ? GO:0003735 ... P60493 27174928
    126 5ib8:J5 (3.13) BS01 rna ? GO:0003735 ... P80339 27174928
    127 5ib8:J8 (3.13) BS01 rna ? GO:0003735 ... P60494 27174928
    128 5ib8:K8 (3.13) BS01 rna ? GO:0003735 ... Q5SHP6 27174928
    129 5ib8:L5 (3.13) BS01 rna ? GO:0003735 ... P80340 27174928
    130 5ib8:L8 (3.13) BS01 rna ? GO:0003735 ... Q5SHQ6 27174928
    131 5ib8:L8 (3.13) BS02 rna ? GO:0003735 ... Q5SHQ6 27174928
    132 5ib8:M5 (3.13) BS01 rna ? GO:0003735 ... Q5SKU1 27174928
    133 5ib8:M8 (3.13) BS01 rna ? GO:0003735 ... Q5SJE1 27174928
    134 5ib8:M8 (3.13) BS02 rna ? GO:0003735 ... Q5SJE1 27174928
    135 5ib8:N8 (3.13) BS01 rna ? GO:0003735 ... P80339 27174928
    136 5ib8:P8 (3.13) BS01 rna ? GO:0003735 ... P80340 27174928
    137 5ib8:Q8 (3.13) BS01 rna ? GO:0003735 ... Q5SKU1 27174928
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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