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BioLiP
Download all results in tab-seperated text for 42 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5gup:2 (4.0) BS01 PLX ? GO:0008121 ... F1RNZ1 27912063
    2 5gup:2 (4.0) BS02 FES ? GO:0008121 ... F1RNZ1 27912063
    3 5gup:4 (4.0) BS01 PLX ? GO:0008121 ... F1RNZ1 27912063
    4 5gup:4 (4.0) BS02 FES ? GO:0008121 ... F1RNZ1 27912063
    5 5gup:7 (4.0) BS01 PLX ? GO:0005739 ... Q1HBG9 27912063
    6 5gup:7 (4.0) BS02 HEM ? GO:0005739 ... Q1HBG9 27912063
    7 5gup:7 (4.0) BS03 HEM ? GO:0005739 ... Q1HBG9 27912063
    8 5gup:8 (4.0) BS01 HEC N/A GO:0009055 ... N/A 27912063
    9 5gup:Ak (4.0) BS01 HEA N/A GO:0004129 ... N/A 27912063
    10 5gup:Ak (4.0) BS02 HEA N/A GO:0004129 ... N/A 27912063
    11 5gup:Ak (4.0) BS03 CU N/A GO:0004129 ... N/A 27912063
    12 5gup:Ak (4.0) BS04 MG N/A GO:0004129 ... N/A 27912063
    13 5gup:Al (4.0) BS01 CU N/A GO:0004129 ... N/A 27912063
    14 5gup:Al (4.0) BS02 CU N/A GO:0004129 ... N/A 27912063
    15 5gup:Ap (4.0) BS01 ZN N/A GO:0005740 ... N/A 27912063
    16 5gup:B (4.0) BS01 SF4 7.1.1.2 GO:0005739 ... A0A4X1SZP7 27912063
    17 5gup:B (4.0) BS02 FMN 7.1.1.2 GO:0005739 ... A0A4X1SZP7 27912063
    18 5gup:C (4.0) BS01 SF4 ? GO:0016651 ... F1S1A8 27912063
    19 5gup:E (4.0) BS01 FES 7.1.1.2 GO:0016491 ... F1SM98 27912063
    20 5gup:G (4.0) BS01 peptide ? GO:0005743 ... A0A4X1V1H9 27912063
    21 5gup:G (4.0) BS02 SF4 ? GO:0005743 ... A0A4X1V1H9 27912063
    22 5gup:G (4.0) BS03 SF4 ? GO:0005743 ... A0A4X1V1H9 27912063
    23 5gup:G (4.0) BS04 FES ? GO:0005743 ... A0A4X1V1H9 27912063
    24 5gup:H (4.0) BS01 peptide N/A GO:0016020 ... N/A 27912063
    25 5gup:H (4.0) BS02 SF4 N/A GO:0016020 ... N/A 27912063
    26 5gup:H (4.0) BS03 SF4 N/A GO:0016020 ... N/A 27912063
    27 5gup:H (4.0) BS04 PLX N/A GO:0016020 ... N/A 27912063
    28 5gup:I (4.0) BS01 SF4 ? GO:0008137 ... A0A8D1TL60 27912063
    29 5gup:L (4.0) BS01 NDP ? N/A F1SL07 27912063
    30 5gup:O (4.0) BS01 ZMP N/A GO:0006633 ... N/A 27912063
    31 5gup:Q (4.0) BS01 ZMP N/A GO:0045271 ... N/A 27912063
    32 5gup:V (4.0) BS01 PLX ? GO:0005739 ... I3LGM4 27912063
    33 5gup:X (4.0) BS01 ZMP N/A GO:0006633 ... N/A 27912063
    34 5gup:g (4.0) BS01 PLX N/A GO:0005743 ... N/A 27912063
    35 5gup:i (4.0) BS01 PLX 7.1.1.2 GO:0005739 ... O79875 27912063
    36 5gup:o (4.0) BS01 PLX N/A GO:0005739 ... N/A 27912063
    37 5gup:p (4.0) BS01 ZMP ? GO:0006120 ... K7GSE5 27912063
    38 5gup:r (4.0) BS01 PLX 7.1.1.2 GO:0003954 ... O79874 27912063
    39 5gup:w (4.0) BS01 HEM ? GO:0005739 ... Q1HBG9 27912063
    40 5gup:w (4.0) BS02 HEM ? GO:0005739 ... Q1HBG9 27912063
    41 5gup:w (4.0) BS03 PLX ? GO:0005739 ... Q1HBG9 27912063
    42 5gup:x (4.0) BS01 HEC N/A GO:0009055 ... N/A 27912063
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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