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BioLiP
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5gip:A (3.129) BS01 rna ? GO:0005515 ... Q97ZH3 27625427
    2 5gip:A (3.129) BS02 rna ? GO:0005515 ... Q97ZH3 27625427
    3 5gip:A (3.129) BS03 rna ? GO:0005515 ... Q97ZH3 27625427
    4 5gip:B (3.129) BS01 rna ? GO:0005515 ... Q97ZH3 27625427
    5 5gip:B (3.129) BS02 rna ? GO:0005515 ... Q97ZH3 27625427
    6 5gip:B (3.129) BS03 rna ? GO:0005515 ... Q97ZH3 27625427
    7 5gip:B (3.129) BS04 rna ? GO:0005515 ... Q97ZH3 27625427
    8 5gip:B (3.129) BS05 rna ? GO:0005515 ... Q97ZH3 27625427
    9 5gip:C (3.129) BS01 rna ? GO:0001682 ... P55858 27625427
    10 5gip:C (3.129) BS02 rna ? GO:0001682 ... P55858 27625427
    11 5gip:D (3.129) BS01 rna ? GO:0001682 ... P55858 27625427
    12 5gip:D (3.129) BS02 rna ? GO:0001682 ... P55858 27625427
    13 5gip:E (3.129) BS01 rna 2.1.1.- GO:0000494 ... P58032 27625427
    14 5gip:E (3.129) BS02 rna 2.1.1.- GO:0000494 ... P58032 27625427
    15 5gip:E (3.129) BS03 SAH 2.1.1.- GO:0000494 ... P58032 27625427
    16 5gip:F (3.129) BS01 rna 2.1.1.- GO:0000494 ... P58032 27625427
    17 5gip:F (3.129) BS02 rna 2.1.1.- GO:0000494 ... P58032 27625427
    18 5gip:F (3.129) BS03 SAH 2.1.1.- GO:0000494 ... P58032 27625427
    19 5gip:K (3.129) BS01 rna ? GO:0005515 ... Q97ZH3 27625427
    20 5gip:K (3.129) BS02 rna ? GO:0005515 ... Q97ZH3 27625427
    21 5gip:K (3.129) BS03 rna ? GO:0005515 ... Q97ZH3 27625427
    22 5gip:K (3.129) BS04 rna ? GO:0005515 ... Q97ZH3 27625427
    23 5gip:L (3.129) BS01 rna ? GO:0005515 ... Q97ZH3 27625427
    24 5gip:L (3.129) BS02 rna ? GO:0005515 ... Q97ZH3 27625427
    25 5gip:L (3.129) BS03 rna ? GO:0005515 ... Q97ZH3 27625427
    26 5gip:L (3.129) BS04 rna ? GO:0005515 ... Q97ZH3 27625427
    27 5gip:M (3.129) BS01 rna ? GO:0001682 ... P55858 27625427
    28 5gip:M (3.129) BS02 rna ? GO:0001682 ... P55858 27625427
    29 5gip:N (3.129) BS01 rna ? GO:0001682 ... P55858 27625427
    30 5gip:N (3.129) BS02 rna ? GO:0001682 ... P55858 27625427
    31 5gip:O (3.129) BS01 rna 2.1.1.- GO:0000494 ... P58032 27625427
    32 5gip:O (3.129) BS02 rna 2.1.1.- GO:0000494 ... P58032 27625427
    33 5gip:O (3.129) BS03 SAH 2.1.1.- GO:0000494 ... P58032 27625427
    34 5gip:P (3.129) BS01 rna 2.1.1.- GO:0000494 ... P58032 27625427
    35 5gip:P (3.129) BS02 rna 2.1.1.- GO:0000494 ... P58032 27625427
    36 5gip:P (3.129) BS03 SAH 2.1.1.- GO:0000494 ... P58032 27625427
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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