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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 244 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5fdu:10 (2.9) BS01 rna ? GO:0003735 ... P60493 26792896
    2 5fdu:10 (2.9) BS02 rna ? GO:0003735 ... P60493 26792896
    3 5fdu:10 (2.9) BS03 MG ? GO:0003735 ... P60493 26792896
    4 5fdu:10 (2.9) BS04 MG ? GO:0003735 ... P60493 26792896
    5 5fdu:10 (2.9) BS05 MG ? GO:0003735 ... P60493 26792896
    6 5fdu:11 (2.9) BS01 rna ? GO:0003735 ... P60494 26792896
    7 5fdu:11 (2.9) BS02 MG ? GO:0003735 ... P60494 26792896
    8 5fdu:12 (2.9) BS01 rna ? GO:0003735 ... Q5SHP6 26792896
    9 5fdu:13 (2.9) BS01 rna ? GO:0003735 ... Q5SHQ6 26792896
    10 5fdu:13 (2.9) BS02 rna ? GO:0003735 ... Q5SHQ6 26792896
    11 5fdu:13 (2.9) BS03 MG ? GO:0003735 ... Q5SHQ6 26792896
    12 5fdu:13 (2.9) BS04 MG ? GO:0003735 ... Q5SHQ6 26792896
    13 5fdu:14 (2.9) BS01 rna ? GO:0003735 ... Q5SJE1 26792896
    14 5fdu:14 (2.9) BS02 ZN ? GO:0003735 ... Q5SJE1 26792896
    15 5fdu:15 (2.9) BS01 rna ? GO:0003735 ... P80339 26792896
    16 5fdu:15 (2.9) BS02 MG ? GO:0003735 ... P80339 26792896
    17 5fdu:15 (2.9) BS03 MG ? GO:0003735 ... P80339 26792896
    18 5fdu:15 (2.9) BS04 ZN ? GO:0003735 ... P80339 26792896
    19 5fdu:16 (2.9) BS01 rna ? GO:0000049 ... P35871 26792896
    20 5fdu:16 (2.9) BS02 ZN ? GO:0000049 ... P35871 26792896
    21 5fdu:17 (2.9) BS01 rna ? GO:0003735 ... P80340 26792896
    22 5fdu:17 (2.9) BS02 MG ? GO:0003735 ... P80340 26792896
    23 5fdu:17 (2.9) BS03 MG ? GO:0003735 ... P80340 26792896
    24 5fdu:17 (2.9) BS04 MG ? GO:0003735 ... P80340 26792896
    25 5fdu:18 (2.9) BS01 rna ? GO:0003735 ... Q5SKU1 26792896
    26 5fdu:18 (2.9) BS02 MG ? GO:0003735 ... Q5SKU1 26792896
    27 5fdu:18 (2.9) BS03 MG ? GO:0003735 ... Q5SKU1 26792896
    28 5fdu:19 (2.9) BS01 rna ? GO:0003735 ... Q5SHR2 26792896
    29 5fdu:19 (2.9) BS02 ZN ? GO:0003735 ... Q5SHR2 26792896
    30 5fdu:1D (2.9) BS01 rna ? GO:0002181 ... P60405 26792896
    31 5fdu:1D (2.9) BS02 MG ? GO:0002181 ... P60405 26792896
    32 5fdu:1D (2.9) BS03 MG ? GO:0002181 ... P60405 26792896
    33 5fdu:1D (2.9) BS04 MG ? GO:0002181 ... P60405 26792896
    34 5fdu:1D (2.9) BS05 MG ? GO:0002181 ... P60405 26792896
    35 5fdu:1D (2.9) BS06 MG ? GO:0002181 ... P60405 26792896
    36 5fdu:1D (2.9) BS07 MG ? GO:0002181 ... P60405 26792896
    37 5fdu:1D (2.9) BS08 MG ? GO:0002181 ... P60405 26792896
    38 5fdu:1D (2.9) BS09 MG ? GO:0002181 ... P60405 26792896
    39 5fdu:1D (2.9) BS10 MG ? GO:0002181 ... P60405 26792896
    40 5fdu:1D (2.9) BS11 MG ? GO:0002181 ... P60405 26792896
    41 5fdu:1E (2.9) BS01 rna ? GO:0003735 ... Q5SHN8 26792896
    42 5fdu:1E (2.9) BS02 MG ? GO:0003735 ... Q5SHN8 26792896
    43 5fdu:1E (2.9) BS03 MG ? GO:0003735 ... Q5SHN8 26792896
    44 5fdu:1E (2.9) BS04 MG ? GO:0003735 ... Q5SHN8 26792896
    45 5fdu:1F (2.9) BS01 rna ? GO:0003735 ... Q5SHN9 26792896
    46 5fdu:1F (2.9) BS02 MG ? GO:0003735 ... Q5SHN9 26792896
    47 5fdu:1F (2.9) BS03 MG ? GO:0003735 ... Q5SHN9 26792896
    48 5fdu:1F (2.9) BS04 MG ? GO:0003735 ... Q5SHN9 26792896
    49 5fdu:1F (2.9) BS05 MG ? GO:0003735 ... Q5SHN9 26792896
    50 5fdu:1F (2.9) BS06 MG ? GO:0003735 ... Q5SHN9 26792896
    51 5fdu:1F (2.9) BS07 MG ? GO:0003735 ... Q5SHN9 26792896
    52 5fdu:1F (2.9) BS08 MG ? GO:0003735 ... Q5SHN9 26792896
    53 5fdu:1F (2.9) BS09 MG ? GO:0003735 ... Q5SHN9 26792896
    54 5fdu:1F (2.9) BS10 MG ? GO:0003735 ... Q5SHN9 26792896
    55 5fdu:1F (2.9) BS11 MG ? GO:0003735 ... Q5SHN9 26792896
    56 5fdu:1G (2.9) BS01 rna ? GO:0000049 ... Q5SHQ0 26792896
    57 5fdu:1G (2.9) BS02 rna ? GO:0000049 ... Q5SHQ0 26792896
    58 5fdu:1G (2.9) BS03 MG ? GO:0000049 ... Q5SHQ0 26792896
    59 5fdu:1G (2.9) BS04 MG ? GO:0000049 ... Q5SHQ0 26792896
    60 5fdu:1G (2.9) BS05 MG ? GO:0000049 ... Q5SHQ0 26792896
    61 5fdu:1H (2.9) BS01 rna N/A GO:0003735 ... N/A 26792896
    62 5fdu:1I (2.9) BS01 rna ? GO:0003735 ... Q5SLQ1 26792896
    63 5fdu:1N (2.9) BS01 rna ? GO:0003729 ... P60488 26792896
    64 5fdu:1O (2.9) BS01 rna ? GO:0003735 ... Q5SHP8 26792896
    65 5fdu:1O (2.9) BS02 rna ? GO:0003735 ... Q5SHP8 26792896
    66 5fdu:1P (2.9) BS01 rna ? GO:0003735 ... Q5SHQ7 26792896
    67 5fdu:1P (2.9) BS02 MG ? GO:0003735 ... Q5SHQ7 26792896
    68 5fdu:1P (2.9) BS03 MG ? GO:0003735 ... Q5SHQ7 26792896
    69 5fdu:1P (2.9) BS04 MG ? GO:0003735 ... Q5SHQ7 26792896
    70 5fdu:1Q (2.9) BS01 rna ? GO:0000049 ... P60489 26792896
    71 5fdu:1Q (2.9) BS02 rna ? GO:0000049 ... P60489 26792896
    72 5fdu:1Q (2.9) BS03 MG ? GO:0000049 ... P60489 26792896
    73 5fdu:1Q (2.9) BS04 MG ? GO:0000049 ... P60489 26792896
    74 5fdu:1Q (2.9) BS05 MG ? GO:0000049 ... P60489 26792896
    75 5fdu:1Q (2.9) BS06 MG ? GO:0000049 ... P60489 26792896
    76 5fdu:1R (2.9) BS01 rna ? GO:0003735 ... Q9Z9H5 26792896
    77 5fdu:1R (2.9) BS02 MG ? GO:0003735 ... Q9Z9H5 26792896
    78 5fdu:1S (2.9) BS01 rna ? GO:0003735 ... Q5SHQ4 26792896
    79 5fdu:1S (2.9) BS02 rna ? GO:0003735 ... Q5SHQ4 26792896
    80 5fdu:1T (2.9) BS01 rna ? GO:0003735 ... P60490 26792896
    81 5fdu:1T (2.9) BS02 rna ? GO:0003735 ... P60490 26792896
    82 5fdu:1U (2.9) BS01 rna ? GO:0000027 ... P60491 26792896
    83 5fdu:1U (2.9) BS02 MG ? GO:0000027 ... P60491 26792896
    84 5fdu:1U (2.9) BS03 MG ? GO:0000027 ... P60491 26792896
    85 5fdu:1U (2.9) BS04 MG ? GO:0000027 ... P60491 26792896
    86 5fdu:1U (2.9) BS05 MG ? GO:0000027 ... P60491 26792896
    87 5fdu:1U (2.9) BS06 MG ? GO:0000027 ... P60491 26792896
    88 5fdu:1U (2.9) BS07 MG ? GO:0000027 ... P60491 26792896
    89 5fdu:1V (2.9) BS01 rna ? GO:0003723 ... P60492 26792896
    90 5fdu:1V (2.9) BS02 MG ? GO:0003723 ... P60492 26792896
    91 5fdu:1V (2.9) BS03 MG ? GO:0003723 ... P60492 26792896
    92 5fdu:1V (2.9) BS04 MG ? GO:0003723 ... P60492 26792896
    93 5fdu:1W (2.9) BS01 rna ? GO:0003735 ... Q5SHP3 26792896
    94 5fdu:1W (2.9) BS02 MG ? GO:0003735 ... Q5SHP3 26792896
    95 5fdu:1X (2.9) BS01 rna ? GO:0000027 ... Q5SHP0 26792896
    96 5fdu:1Y (2.9) BS01 rna ? GO:0003723 ... Q5SHP9 26792896
    97 5fdu:1Y (2.9) BS02 ZN ? GO:0003723 ... Q5SHP9 26792896
    98 5fdu:1Z (2.9) BS01 rna ? GO:0003723 ... Q5SHZ1 26792896
    99 5fdu:1Z (2.9) BS02 rna ? GO:0003723 ... Q5SHZ1 26792896
    100 5fdu:1b (2.9) BS01 rna ? GO:0003735 ... P80371 26792896
    101 5fdu:1b (2.9) BS02 MG ? GO:0003735 ... P80371 26792896
    102 5fdu:1c (2.9) BS01 rna ? GO:0003676 ... P80372 26792896
    103 5fdu:1d (2.9) BS01 rna ? GO:0003723 ... P80373 26792896
    104 5fdu:1d (2.9) BS02 SF4 ? GO:0003723 ... P80373 26792896
    105 5fdu:1e (2.9) BS01 rna ? GO:0003723 ... Q5SHQ5 26792896
    106 5fdu:1e (2.9) BS02 MG ? GO:0003723 ... Q5SHQ5 26792896
    107 5fdu:1f (2.9) BS01 rna ? GO:0003735 ... Q5SLP8 26792896
    108 5fdu:1g (2.9) BS01 rna ? GO:0000028 ... P17291 26792896
    109 5fdu:1h (2.9) BS01 rna N/A GO:0003735 ... N/A 26792896
    110 5fdu:1i (2.9) BS01 rna ? GO:0000049 ... P80374 26792896
    111 5fdu:1j (2.9) BS01 rna ? GO:0000049 ... Q5SHN7 26792896
    112 5fdu:1k (2.9) BS01 rna ? GO:0003735 ... P80376 26792896
    113 5fdu:1k (2.9) BS02 MG ? GO:0003735 ... P80376 26792896
    114 5fdu:1l (2.9) BS01 rna ? GO:0000049 ... Q5SHN3 26792896
    115 5fdu:1l (2.9) BS02 MG ? GO:0000049 ... Q5SHN3 26792896
    116 5fdu:1m (2.9) BS01 rna ? GO:0000049 ... P80377 26792896
    117 5fdu:1m (2.9) BS02 rna ? GO:0000049 ... P80377 26792896
    118 5fdu:1m (2.9) BS03 MG ? GO:0000049 ... P80377 26792896
    119 5fdu:1n (2.9) BS01 rna N/A GO:0003735 ... N/A 26792896
    120 5fdu:1n (2.9) BS02 ZN N/A GO:0003735 ... N/A 26792896
    121 5fdu:1o (2.9) BS01 rna ? GO:0003735 ... Q5SJ76 26792896
    122 5fdu:1o (2.9) BS02 rna ? GO:0003735 ... Q5SJ76 26792896
    123 5fdu:1p (2.9) BS01 rna ? GO:0003735 ... Q5SJH3 26792896
    124 5fdu:1q (2.9) BS01 rna N/A GO:0003735 ... N/A 26792896
    125 5fdu:1r (2.9) BS01 rna ? GO:0003735 ... Q5SLQ0 26792896
    126 5fdu:1s (2.9) BS01 rna ? GO:0003723 ... Q5SHP2 26792896
    127 5fdu:1t (2.9) BS01 rna ? GO:0003723 ... P80380 26792896
    128 5fdu:1x (2.9) BS01 rna ? GO:0044238 ... P0AD49 26792896
    129 5fdu:20 (2.9) BS01 rna ? GO:0003735 ... P60493 26792896
    130 5fdu:20 (2.9) BS02 rna ? GO:0003735 ... P60493 26792896
    131 5fdu:20 (2.9) BS03 MG ? GO:0003735 ... P60493 26792896
    132 5fdu:20 (2.9) BS04 MG ? GO:0003735 ... P60493 26792896
    133 5fdu:21 (2.9) BS01 rna ? GO:0003735 ... P60494 26792896
    134 5fdu:21 (2.9) BS02 MG ? GO:0003735 ... P60494 26792896
    135 5fdu:22 (2.9) BS01 rna ? GO:0003735 ... Q5SHP6 26792896
    136 5fdu:23 (2.9) BS01 rna ? GO:0003735 ... Q5SHQ6 26792896
    137 5fdu:23 (2.9) BS02 rna ? GO:0003735 ... Q5SHQ6 26792896
    138 5fdu:23 (2.9) BS03 MG ? GO:0003735 ... Q5SHQ6 26792896
    139 5fdu:24 (2.9) BS01 rna ? GO:0003735 ... Q5SJE1 26792896
    140 5fdu:24 (2.9) BS02 ZN ? GO:0003735 ... Q5SJE1 26792896
    141 5fdu:25 (2.9) BS01 rna ? GO:0003735 ... P80339 26792896
    142 5fdu:25 (2.9) BS02 MG ? GO:0003735 ... P80339 26792896
    143 5fdu:25 (2.9) BS03 MG ? GO:0003735 ... P80339 26792896
    144 5fdu:25 (2.9) BS04 ZN ? GO:0003735 ... P80339 26792896
    145 5fdu:26 (2.9) BS01 rna ? GO:0000049 ... P35871 26792896
    146 5fdu:26 (2.9) BS02 ZN ? GO:0000049 ... P35871 26792896
    147 5fdu:27 (2.9) BS01 rna ? GO:0003735 ... P80340 26792896
    148 5fdu:27 (2.9) BS02 MG ? GO:0003735 ... P80340 26792896
    149 5fdu:28 (2.9) BS01 rna ? GO:0003735 ... Q5SKU1 26792896
    150 5fdu:28 (2.9) BS02 MG ? GO:0003735 ... Q5SKU1 26792896
    151 5fdu:29 (2.9) BS01 rna ? GO:0003735 ... Q5SHR2 26792896
    152 5fdu:29 (2.9) BS02 ZN ? GO:0003735 ... Q5SHR2 26792896
    153 5fdu:2D (2.9) BS01 rna ? GO:0002181 ... P60405 26792896
    154 5fdu:2D (2.9) BS02 MG ? GO:0002181 ... P60405 26792896
    155 5fdu:2D (2.9) BS03 MG ? GO:0002181 ... P60405 26792896
    156 5fdu:2D (2.9) BS04 MG ? GO:0002181 ... P60405 26792896
    157 5fdu:2D (2.9) BS05 MG ? GO:0002181 ... P60405 26792896
    158 5fdu:2D (2.9) BS06 MG ? GO:0002181 ... P60405 26792896
    159 5fdu:2D (2.9) BS07 MG ? GO:0002181 ... P60405 26792896
    160 5fdu:2D (2.9) BS08 MG ? GO:0002181 ... P60405 26792896
    161 5fdu:2E (2.9) BS01 rna ? GO:0003735 ... Q5SHN8 26792896
    162 5fdu:2E (2.9) BS02 MG ? GO:0003735 ... Q5SHN8 26792896
    163 5fdu:2E (2.9) BS03 MG ? GO:0003735 ... Q5SHN8 26792896
    164 5fdu:2E (2.9) BS04 MG ? GO:0003735 ... Q5SHN8 26792896
    165 5fdu:2E (2.9) BS05 MG ? GO:0003735 ... Q5SHN8 26792896
    166 5fdu:2F (2.9) BS01 rna ? GO:0003735 ... Q5SHN9 26792896
    167 5fdu:2F (2.9) BS02 MG ? GO:0003735 ... Q5SHN9 26792896
    168 5fdu:2F (2.9) BS03 MG ? GO:0003735 ... Q5SHN9 26792896
    169 5fdu:2F (2.9) BS04 MG ? GO:0003735 ... Q5SHN9 26792896
    170 5fdu:2F (2.9) BS05 MG ? GO:0003735 ... Q5SHN9 26792896
    171 5fdu:2F (2.9) BS06 MG ? GO:0003735 ... Q5SHN9 26792896
    172 5fdu:2F (2.9) BS07 MG ? GO:0003735 ... Q5SHN9 26792896
    173 5fdu:2F (2.9) BS08 MG ? GO:0003735 ... Q5SHN9 26792896
    174 5fdu:2F (2.9) BS09 MG ? GO:0003735 ... Q5SHN9 26792896
    175 5fdu:2F (2.9) BS10 MG ? GO:0003735 ... Q5SHN9 26792896
    176 5fdu:2F (2.9) BS11 MG ? GO:0003735 ... Q5SHN9 26792896
    177 5fdu:2G (2.9) BS01 rna ? GO:0000049 ... Q5SHQ0 26792896
    178 5fdu:2G (2.9) BS02 rna ? GO:0000049 ... Q5SHQ0 26792896
    179 5fdu:2G (2.9) BS03 MG ? GO:0000049 ... Q5SHQ0 26792896
    180 5fdu:2H (2.9) BS01 rna N/A GO:0003735 ... N/A 26792896
    181 5fdu:2H (2.9) BS02 MG N/A GO:0003735 ... N/A 26792896
    182 5fdu:2I (2.9) BS01 rna ? GO:0003735 ... Q5SLQ1 26792896
    183 5fdu:2N (2.9) BS01 rna ? GO:0003729 ... P60488 26792896
    184 5fdu:2O (2.9) BS01 rna ? GO:0003735 ... Q5SHP8 26792896
    185 5fdu:2O (2.9) BS02 rna ? GO:0003735 ... Q5SHP8 26792896
    186 5fdu:2P (2.9) BS01 rna ? GO:0003735 ... Q5SHQ7 26792896
    187 5fdu:2P (2.9) BS02 MG ? GO:0003735 ... Q5SHQ7 26792896
    188 5fdu:2Q (2.9) BS01 rna ? GO:0000049 ... P60489 26792896
    189 5fdu:2Q (2.9) BS02 rna ? GO:0000049 ... P60489 26792896
    190 5fdu:2Q (2.9) BS03 MG ? GO:0000049 ... P60489 26792896
    191 5fdu:2Q (2.9) BS04 MG ? GO:0000049 ... P60489 26792896
    192 5fdu:2R (2.9) BS01 rna ? GO:0003735 ... Q9Z9H5 26792896
    193 5fdu:2R (2.9) BS02 MG ? GO:0003735 ... Q9Z9H5 26792896
    194 5fdu:2R (2.9) BS03 MG ? GO:0003735 ... Q9Z9H5 26792896
    195 5fdu:2S (2.9) BS01 rna ? GO:0003735 ... Q5SHQ4 26792896
    196 5fdu:2S (2.9) BS02 rna ? GO:0003735 ... Q5SHQ4 26792896
    197 5fdu:2T (2.9) BS01 rna ? GO:0003735 ... P60490 26792896
    198 5fdu:2T (2.9) BS02 rna ? GO:0003735 ... P60490 26792896
    199 5fdu:2U (2.9) BS01 rna ? GO:0000027 ... P60491 26792896
    200 5fdu:2U (2.9) BS02 MG ? GO:0000027 ... P60491 26792896
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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