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BioLiP
Download all results in tab-seperated text for 142 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5el7:11 (3.15) BS01 rna ? GO:0002181 ... P60405 26791911
    2 5el7:11 (3.15) BS02 rna ? GO:0002181 ... P60405 26791911
    3 5el7:12 (3.15) BS01 rna ? GO:0003735 ... P80371 26791911
    4 5el7:15 (3.15) BS01 rna ? GO:0003729 ... P60488 26791911
    5 5el7:19 (3.15) BS01 rna ? GO:0002181 ... P60405 26791911
    6 5el7:19 (3.15) BS02 rna ? GO:0002181 ... P60405 26791911
    7 5el7:19 (3.15) BS03 MG ? GO:0002181 ... P60405 26791911
    8 5el7:1A (3.15) BS01 rna ? GO:0000049 ... Q5SHN7 26791911
    9 5el7:1E (3.15) BS01 rna ? GO:0003735 ... P80371 26791911
    10 5el7:1I (3.15) BS01 rna ? GO:0000049 ... Q5SHN7 26791911
    11 5el7:1I (3.15) BS02 MG ? GO:0000049 ... Q5SHN7 26791911
    12 5el7:21 (3.15) BS01 rna ? GO:0003735 ... Q5SHN8 26791911
    13 5el7:21 (3.15) BS02 MG ? GO:0003735 ... Q5SHN8 26791911
    14 5el7:22 (3.15) BS01 rna ? GO:0003676 ... P80372 26791911
    15 5el7:22 (3.15) BS02 rna ? GO:0003676 ... P80372 26791911
    16 5el7:25 (3.15) BS01 rna ? GO:0003735 ... Q5SHP8 26791911
    17 5el7:25 (3.15) BS02 rna ? GO:0003735 ... Q5SHP8 26791911
    18 5el7:29 (3.15) BS01 rna ? GO:0003735 ... Q5SHN8 26791911
    19 5el7:29 (3.15) BS02 MG ? GO:0003735 ... Q5SHN8 26791911
    20 5el7:2A (3.15) BS01 rna ? GO:0003735 ... P80376 26791911
    21 5el7:2A (3.15) BS02 MG ? GO:0003735 ... P80376 26791911
    22 5el7:2E (3.15) BS01 rna ? GO:0003676 ... P80372 26791911
    23 5el7:2I (3.15) BS01 rna ? GO:0003735 ... P80376 26791911
    24 5el7:2I (3.15) BS02 MG ? GO:0003735 ... P80376 26791911
    25 5el7:31 (3.15) BS01 rna ? GO:0003735 ... Q5SHN9 26791911
    26 5el7:31 (3.15) BS02 MG ? GO:0003735 ... Q5SHN9 26791911
    27 5el7:32 (3.15) BS01 rna ? GO:0003723 ... P80373 26791911
    28 5el7:32 (3.15) BS02 SF4 ? GO:0003723 ... P80373 26791911
    29 5el7:35 (3.15) BS01 rna ? GO:0003735 ... Q5SHQ7 26791911
    30 5el7:39 (3.15) BS01 rna ? GO:0003735 ... Q5SHN9 26791911
    31 5el7:39 (3.15) BS02 MG ? GO:0003735 ... Q5SHN9 26791911
    32 5el7:39 (3.15) BS03 MG ? GO:0003735 ... Q5SHN9 26791911
    33 5el7:3A (3.15) BS01 rna ? GO:0000049 ... Q5SHN3 26791911
    34 5el7:3E (3.15) BS01 rna ? GO:0003723 ... P80373 26791911
    35 5el7:3E (3.15) BS02 SF4 ? GO:0003723 ... P80373 26791911
    36 5el7:3I (3.15) BS01 rna ? GO:0000049 ... Q5SHN3 26791911
    37 5el7:41 (3.15) BS01 rna ? GO:0000049 ... Q5SHQ0 26791911
    38 5el7:41 (3.15) BS02 rna ? GO:0000049 ... Q5SHQ0 26791911
    39 5el7:41 (3.15) BS03 rna ? GO:0000049 ... Q5SHQ0 26791911
    40 5el7:41 (3.15) BS04 MG ? GO:0000049 ... Q5SHQ0 26791911
    41 5el7:41 (3.15) BS05 MG ? GO:0000049 ... Q5SHQ0 26791911
    42 5el7:42 (3.15) BS01 rna ? GO:0003723 ... Q5SHQ5 26791911
    43 5el7:45 (3.15) BS01 rna ? GO:0000049 ... P60489 26791911
    44 5el7:45 (3.15) BS02 rna ? GO:0000049 ... P60489 26791911
    45 5el7:45 (3.15) BS03 MG ? GO:0000049 ... P60489 26791911
    46 5el7:49 (3.15) BS01 rna ? GO:0000049 ... Q5SHQ0 26791911
    47 5el7:49 (3.15) BS02 rna ? GO:0000049 ... Q5SHQ0 26791911
    48 5el7:49 (3.15) BS03 rna ? GO:0000049 ... Q5SHQ0 26791911
    49 5el7:4A (3.15) BS01 rna ? GO:0000049 ... P80377 26791911
    50 5el7:4E (3.15) BS01 rna ? GO:0003723 ... Q5SHQ5 26791911
    51 5el7:4E (3.15) BS02 rna ? GO:0003723 ... Q5SHQ5 26791911
    52 5el7:4I (3.15) BS01 rna ? GO:0000049 ... P80377 26791911
    53 5el7:51 (3.15) BS01 rna N/A GO:0003735 ... N/A 26791911
    54 5el7:52 (3.15) BS01 rna ? GO:0003735 ... Q5SLP8 26791911
    55 5el7:55 (3.15) BS01 rna ? GO:0003735 ... Q9Z9H5 26791911
    56 5el7:58 (3.15) BS01 rna ? GO:0003729 ... P60488 26791911
    57 5el7:59 (3.15) BS01 rna N/A GO:0003735 ... N/A 26791911
    58 5el7:5A (3.15) BS01 rna N/A GO:0003735 ... N/A 26791911
    59 5el7:5A (3.15) BS02 ZN N/A GO:0003735 ... N/A 26791911
    60 5el7:5E (3.15) BS01 rna ? GO:0003735 ... Q5SLP8 26791911
    61 5el7:5E (3.15) BS02 MG ? GO:0003735 ... Q5SLP8 26791911
    62 5el7:5I (3.15) BS01 rna N/A GO:0003735 ... N/A 26791911
    63 5el7:5I (3.15) BS02 MG N/A GO:0003735 ... N/A 26791911
    64 5el7:5I (3.15) BS03 ZN N/A GO:0003735 ... N/A 26791911
    65 5el7:61 (3.15) BS01 rna ? GO:0003735 ... Q5SLQ1 26791911
    66 5el7:62 (3.15) BS01 rna ? GO:0000028 ... P17291 26791911
    67 5el7:62 (3.15) BS02 rna ? GO:0000028 ... P17291 26791911
    68 5el7:65 (3.15) BS01 rna ? GO:0003735 ... Q5SHQ4 26791911
    69 5el7:65 (3.15) BS02 rna ? GO:0003735 ... Q5SHQ4 26791911
    70 5el7:68 (3.15) BS01 rna ? GO:0003735 ... Q5SHP8 26791911
    71 5el7:68 (3.15) BS02 rna ? GO:0003735 ... Q5SHP8 26791911
    72 5el7:69 (3.15) BS01 rna ? GO:0003735 ... Q5SLQ1 26791911
    73 5el7:69 (3.15) BS02 rna ? GO:0003735 ... Q5SLQ1 26791911
    74 5el7:6A (3.15) BS01 rna ? GO:0003735 ... Q5SJ76 26791911
    75 5el7:6A (3.15) BS02 rna ? GO:0003735 ... Q5SJ76 26791911
    76 5el7:6E (3.15) BS01 rna ? GO:0000028 ... P17291 26791911
    77 5el7:6E (3.15) BS02 rna ? GO:0000028 ... P17291 26791911
    78 5el7:6I (3.15) BS01 rna ? GO:0003735 ... Q5SJ76 26791911
    79 5el7:6I (3.15) BS02 rna ? GO:0003735 ... Q5SJ76 26791911
    80 5el7:71 (3.15) BS01 rna ? GO:0000049 ... Q5SLP7 26791911
    81 5el7:71 (3.15) BS02 rna ? GO:0000049 ... Q5SLP7 26791911
    82 5el7:72 (3.15) BS01 rna N/A GO:0003735 ... N/A 26791911
    83 5el7:75 (3.15) BS01 rna ? GO:0003735 ... P60490 26791911
    84 5el7:75 (3.15) BS02 rna ? GO:0003735 ... P60490 26791911
    85 5el7:78 (3.15) BS01 rna ? GO:0003735 ... Q5SHQ7 26791911
    86 5el7:79 (3.15) BS01 rna ? GO:0000049 ... Q5SLP7 26791911
    87 5el7:79 (3.15) BS02 rna ? GO:0000049 ... Q5SLP7 26791911
    88 5el7:7A (3.15) BS01 rna ? GO:0003735 ... Q5SJH3 26791911
    89 5el7:7E (3.15) BS01 rna N/A GO:0003735 ... N/A 26791911
    90 5el7:7I (3.15) BS01 rna ? GO:0003735 ... Q5SJH3 26791911
    91 5el7:82 (3.15) BS01 rna ? GO:0000049 ... P80374 26791911
    92 5el7:85 (3.15) BS01 rna ? GO:0000027 ... P60491 26791911
    93 5el7:88 (3.15) BS01 rna ? GO:0000049 ... P60489 26791911
    94 5el7:88 (3.15) BS02 rna ? GO:0000049 ... P60489 26791911
    95 5el7:88 (3.15) BS03 rna ? GO:0000049 ... P60489 26791911
    96 5el7:8A (3.15) BS01 rna N/A GO:0003735 ... N/A 26791911
    97 5el7:8E (3.15) BS01 rna ? GO:0000049 ... P80374 26791911
    98 5el7:8E (3.15) BS02 rna ? GO:0000049 ... P80374 26791911
    99 5el7:8I (3.15) BS01 rna N/A GO:0003735 ... N/A 26791911
    100 5el7:95 (3.15) BS01 rna ? GO:0003723 ... P60492 26791911
    101 5el7:98 (3.15) BS01 rna ? GO:0003735 ... Q9Z9H5 26791911
    102 5el7:9A (3.15) BS01 rna ? GO:0003735 ... Q5SLQ0 26791911
    103 5el7:9I (3.15) BS01 rna ? GO:0003735 ... Q5SLQ0 26791911
    104 5el7:A5 (3.15) BS01 rna ? GO:0003735 ... Q5SHP3 26791911
    105 5el7:A8 (3.15) BS01 rna ? GO:0003735 ... Q5SHQ4 26791911
    106 5el7:A8 (3.15) BS02 rna ? GO:0003735 ... Q5SHQ4 26791911
    107 5el7:AA (3.15) BS01 rna ? GO:0000028 ... Q5SHP2 26791911
    108 5el7:AI (3.15) BS01 rna ? GO:0000028 ... Q5SHP2 26791911
    109 5el7:B5 (3.15) BS01 rna ? GO:0000027 ... Q5SHP0 26791911
    110 5el7:B8 (3.15) BS01 rna ? GO:0003735 ... P60490 26791911
    111 5el7:B8 (3.15) BS02 rna ? GO:0003735 ... P60490 26791911
    112 5el7:BA (3.15) BS01 rna ? GO:0003723 ... P80380 26791911
    113 5el7:BI (3.15) BS01 rna ? GO:0003723 ... P80380 26791911
    114 5el7:C5 (3.15) BS01 rna ? GO:0003723 ... Q5SHP9 26791911
    115 5el7:C8 (3.15) BS01 rna ? GO:0000027 ... P60491 26791911
    116 5el7:D5 (3.15) BS01 rna ? GO:0003723 ... Q5SHZ1 26791911
    117 5el7:D8 (3.15) BS01 rna ? GO:0003723 ... P60492 26791911
    118 5el7:E5 (3.15) BS01 rna ? GO:0003735 ... P60493 26791911
    119 5el7:E5 (3.15) BS02 rna ? GO:0003735 ... P60493 26791911
    120 5el7:E5 (3.15) BS03 rna ? GO:0003735 ... P60493 26791911
    121 5el7:E8 (3.15) BS01 rna ? GO:0003735 ... Q5SHP3 26791911
    122 5el7:E8 (3.15) BS02 MG ? GO:0003735 ... Q5SHP3 26791911
    123 5el7:F5 (3.15) BS01 rna ? GO:0003735 ... P60494 26791911
    124 5el7:F8 (3.15) BS01 rna ? GO:0000027 ... Q5SHP0 26791911
    125 5el7:G5 (3.15) BS01 rna ? GO:0003735 ... Q5SHP6 26791911
    126 5el7:G8 (3.15) BS01 rna ? GO:0003723 ... Q5SHP9 26791911
    127 5el7:H5 (3.15) BS01 rna ? GO:0003735 ... Q5SHQ6 26791911
    128 5el7:H5 (3.15) BS02 rna ? GO:0003735 ... Q5SHQ6 26791911
    129 5el7:H8 (3.15) BS01 rna ? GO:0003723 ... Q5SHZ1 26791911
    130 5el7:I8 (3.15) BS01 rna ? GO:0003735 ... P60493 26791911
    131 5el7:I8 (3.15) BS02 rna ? GO:0003735 ... P60493 26791911
    132 5el7:J5 (3.15) BS01 rna ? GO:0003735 ... P80339 26791911
    133 5el7:J8 (3.15) BS01 rna ? GO:0003735 ... P60494 26791911
    134 5el7:K8 (3.15) BS01 rna ? GO:0003735 ... Q5SHP6 26791911
    135 5el7:L5 (3.15) BS01 rna ? GO:0003735 ... P80340 26791911
    136 5el7:L8 (3.15) BS01 rna ? GO:0003735 ... Q5SHQ6 26791911
    137 5el7:L8 (3.15) BS02 rna ? GO:0003735 ... Q5SHQ6 26791911
    138 5el7:M5 (3.15) BS01 rna ? GO:0003735 ... Q5SKU1 26791911
    139 5el7:M8 (3.15) BS01 rna ? GO:0003735 ... Q5SJE1 26791911
    140 5el7:N8 (3.15) BS01 rna ? GO:0003735 ... P80339 26791911
    141 5el7:P8 (3.15) BS01 rna ? GO:0003735 ... P80340 26791911
    142 5el7:Q8 (3.15) BS01 rna ? GO:0003735 ... Q5SKU1 26791911
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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