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BioLiP
Download all results in tab-seperated text for 129 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5el4:11 (3.15) BS01 rna ? GO:0002181 ... P60405 26791911
    2 5el4:12 (3.15) BS01 rna ? GO:0003735 ... P80371 26791911
    3 5el4:15 (3.15) BS01 rna ? GO:0003729 ... P60488 26791911
    4 5el4:19 (3.15) BS01 rna ? GO:0002181 ... P60405 26791911
    5 5el4:19 (3.15) BS02 rna ? GO:0002181 ... P60405 26791911
    6 5el4:19 (3.15) BS03 MG ? GO:0002181 ... P60405 26791911
    7 5el4:1A (3.15) BS01 rna ? GO:0000049 ... Q5SHN7 26791911
    8 5el4:1E (3.15) BS01 rna ? GO:0003735 ... P80371 26791911
    9 5el4:1I (3.15) BS01 rna ? GO:0000049 ... Q5SHN7 26791911
    10 5el4:21 (3.15) BS01 rna ? GO:0003735 ... Q5SHN8 26791911
    11 5el4:21 (3.15) BS02 MG ? GO:0003735 ... Q5SHN8 26791911
    12 5el4:22 (3.15) BS01 rna ? GO:0003676 ... P80372 26791911
    13 5el4:25 (3.15) BS01 rna ? GO:0003735 ... Q5SHP8 26791911
    14 5el4:25 (3.15) BS02 rna ? GO:0003735 ... Q5SHP8 26791911
    15 5el4:29 (3.15) BS01 rna ? GO:0003735 ... Q5SHN8 26791911
    16 5el4:2A (3.15) BS01 rna ? GO:0003735 ... P80376 26791911
    17 5el4:2A (3.15) BS02 MG ? GO:0003735 ... P80376 26791911
    18 5el4:2E (3.15) BS01 rna ? GO:0003676 ... P80372 26791911
    19 5el4:2I (3.15) BS01 rna ? GO:0003735 ... P80376 26791911
    20 5el4:2I (3.15) BS02 MG ? GO:0003735 ... P80376 26791911
    21 5el4:31 (3.15) BS01 rna ? GO:0003735 ... Q5SHN9 26791911
    22 5el4:32 (3.15) BS01 rna ? GO:0003723 ... P80373 26791911
    23 5el4:32 (3.15) BS02 SF4 ? GO:0003723 ... P80373 26791911
    24 5el4:35 (3.15) BS01 rna ? GO:0003735 ... Q5SHQ7 26791911
    25 5el4:39 (3.15) BS01 rna ? GO:0003735 ... Q5SHN9 26791911
    26 5el4:39 (3.15) BS02 MG ? GO:0003735 ... Q5SHN9 26791911
    27 5el4:3A (3.15) BS01 rna ? GO:0000049 ... Q5SHN3 26791911
    28 5el4:3E (3.15) BS01 rna ? GO:0003723 ... P80373 26791911
    29 5el4:3E (3.15) BS02 SF4 ? GO:0003723 ... P80373 26791911
    30 5el4:3I (3.15) BS01 rna ? GO:0000049 ... Q5SHN3 26791911
    31 5el4:41 (3.15) BS01 rna ? GO:0000049 ... Q5SHQ0 26791911
    32 5el4:41 (3.15) BS02 rna ? GO:0000049 ... Q5SHQ0 26791911
    33 5el4:41 (3.15) BS03 MG ? GO:0000049 ... Q5SHQ0 26791911
    34 5el4:42 (3.15) BS01 rna ? GO:0003723 ... Q5SHQ5 26791911
    35 5el4:45 (3.15) BS01 rna ? GO:0000049 ... P60489 26791911
    36 5el4:45 (3.15) BS02 rna ? GO:0000049 ... P60489 26791911
    37 5el4:45 (3.15) BS03 rna ? GO:0000049 ... P60489 26791911
    38 5el4:45 (3.15) BS04 rna ? GO:0000049 ... P60489 26791911
    39 5el4:45 (3.15) BS05 MG ? GO:0000049 ... P60489 26791911
    40 5el4:49 (3.15) BS01 rna ? GO:0000049 ... Q5SHQ0 26791911
    41 5el4:49 (3.15) BS02 rna ? GO:0000049 ... Q5SHQ0 26791911
    42 5el4:49 (3.15) BS03 rna ? GO:0000049 ... Q5SHQ0 26791911
    43 5el4:4A (3.15) BS01 rna ? GO:0000049 ... P80377 26791911
    44 5el4:4E (3.15) BS01 rna ? GO:0003723 ... Q5SHQ5 26791911
    45 5el4:4I (3.15) BS01 rna ? GO:0000049 ... P80377 26791911
    46 5el4:51 (3.15) BS01 rna N/A GO:0003735 ... N/A 26791911
    47 5el4:52 (3.15) BS01 rna ? GO:0003735 ... Q5SLP8 26791911
    48 5el4:55 (3.15) BS01 rna ? GO:0003735 ... Q9Z9H5 26791911
    49 5el4:58 (3.15) BS01 rna ? GO:0003729 ... P60488 26791911
    50 5el4:59 (3.15) BS01 rna N/A GO:0003735 ... N/A 26791911
    51 5el4:5A (3.15) BS01 rna N/A GO:0003735 ... N/A 26791911
    52 5el4:5E (3.15) BS01 rna ? GO:0003735 ... Q5SLP8 26791911
    53 5el4:5I (3.15) BS01 rna N/A GO:0003735 ... N/A 26791911
    54 5el4:5I (3.15) BS02 ZN N/A GO:0003735 ... N/A 26791911
    55 5el4:61 (3.15) BS01 rna ? GO:0003735 ... Q5SLQ1 26791911
    56 5el4:62 (3.15) BS01 rna ? GO:0000028 ... P17291 26791911
    57 5el4:62 (3.15) BS02 rna ? GO:0000028 ... P17291 26791911
    58 5el4:65 (3.15) BS01 rna ? GO:0003735 ... Q5SHQ4 26791911
    59 5el4:65 (3.15) BS02 rna ? GO:0003735 ... Q5SHQ4 26791911
    60 5el4:68 (3.15) BS01 rna ? GO:0003735 ... Q5SHP8 26791911
    61 5el4:68 (3.15) BS02 rna ? GO:0003735 ... Q5SHP8 26791911
    62 5el4:69 (3.15) BS01 rna ? GO:0003735 ... Q5SLQ1 26791911
    63 5el4:69 (3.15) BS02 rna ? GO:0003735 ... Q5SLQ1 26791911
    64 5el4:6A (3.15) BS01 rna ? GO:0003735 ... Q5SJ76 26791911
    65 5el4:6A (3.15) BS02 rna ? GO:0003735 ... Q5SJ76 26791911
    66 5el4:6E (3.15) BS01 rna ? GO:0000028 ... P17291 26791911
    67 5el4:6E (3.15) BS02 rna ? GO:0000028 ... P17291 26791911
    68 5el4:6I (3.15) BS01 rna ? GO:0003735 ... Q5SJ76 26791911
    69 5el4:6I (3.15) BS02 rna ? GO:0003735 ... Q5SJ76 26791911
    70 5el4:71 (3.15) BS01 rna ? GO:0000049 ... Q5SLP7 26791911
    71 5el4:71 (3.15) BS02 rna ? GO:0000049 ... Q5SLP7 26791911
    72 5el4:72 (3.15) BS01 rna N/A GO:0003735 ... N/A 26791911
    73 5el4:75 (3.15) BS01 rna ? GO:0003735 ... P60490 26791911
    74 5el4:75 (3.15) BS02 rna ? GO:0003735 ... P60490 26791911
    75 5el4:78 (3.15) BS01 rna ? GO:0003735 ... Q5SHQ7 26791911
    76 5el4:7A (3.15) BS01 rna ? GO:0003735 ... Q5SJH3 26791911
    77 5el4:7E (3.15) BS01 rna N/A GO:0003735 ... N/A 26791911
    78 5el4:7I (3.15) BS01 rna ? GO:0003735 ... Q5SJH3 26791911
    79 5el4:82 (3.15) BS01 rna ? GO:0000049 ... P80374 26791911
    80 5el4:85 (3.15) BS01 rna ? GO:0000027 ... P60491 26791911
    81 5el4:88 (3.15) BS01 rna ? GO:0000049 ... P60489 26791911
    82 5el4:88 (3.15) BS02 rna ? GO:0000049 ... P60489 26791911
    83 5el4:88 (3.15) BS03 rna ? GO:0000049 ... P60489 26791911
    84 5el4:8A (3.15) BS01 rna N/A GO:0003735 ... N/A 26791911
    85 5el4:8E (3.15) BS01 rna ? GO:0000049 ... P80374 26791911
    86 5el4:8E (3.15) BS02 rna ? GO:0000049 ... P80374 26791911
    87 5el4:8I (3.15) BS01 rna N/A GO:0003735 ... N/A 26791911
    88 5el4:95 (3.15) BS01 rna ? GO:0003723 ... P60492 26791911
    89 5el4:98 (3.15) BS01 rna ? GO:0003735 ... Q9Z9H5 26791911
    90 5el4:9A (3.15) BS01 rna ? GO:0003735 ... Q5SLQ0 26791911
    91 5el4:9I (3.15) BS01 rna ? GO:0003735 ... Q5SLQ0 26791911
    92 5el4:A5 (3.15) BS01 rna ? GO:0003735 ... Q5SHP3 26791911
    93 5el4:A8 (3.15) BS01 rna ? GO:0003735 ... Q5SHQ4 26791911
    94 5el4:A8 (3.15) BS02 rna ? GO:0003735 ... Q5SHQ4 26791911
    95 5el4:AA (3.15) BS01 rna ? GO:0000028 ... Q5SHP2 26791911
    96 5el4:AI (3.15) BS01 rna ? GO:0000028 ... Q5SHP2 26791911
    97 5el4:B5 (3.15) BS01 rna ? GO:0000027 ... Q5SHP0 26791911
    98 5el4:B8 (3.15) BS01 rna ? GO:0003735 ... P60490 26791911
    99 5el4:B8 (3.15) BS02 rna ? GO:0003735 ... P60490 26791911
    100 5el4:BA (3.15) BS01 rna ? GO:0003723 ... P80380 26791911
    101 5el4:BI (3.15) BS01 rna ? GO:0003723 ... P80380 26791911
    102 5el4:C5 (3.15) BS01 rna ? GO:0003723 ... Q5SHP9 26791911
    103 5el4:C8 (3.15) BS01 rna ? GO:0000027 ... P60491 26791911
    104 5el4:D5 (3.15) BS01 rna ? GO:0003723 ... Q5SHZ1 26791911
    105 5el4:D8 (3.15) BS01 rna ? GO:0003723 ... P60492 26791911
    106 5el4:E5 (3.15) BS01 rna ? GO:0003735 ... P60493 26791911
    107 5el4:E5 (3.15) BS02 rna ? GO:0003735 ... P60493 26791911
    108 5el4:E5 (3.15) BS03 rna ? GO:0003735 ... P60493 26791911
    109 5el4:E8 (3.15) BS01 rna ? GO:0003735 ... Q5SHP3 26791911
    110 5el4:F5 (3.15) BS01 rna ? GO:0003735 ... P60494 26791911
    111 5el4:F8 (3.15) BS01 rna ? GO:0000027 ... Q5SHP0 26791911
    112 5el4:G5 (3.15) BS01 rna ? GO:0003735 ... Q5SHP6 26791911
    113 5el4:G8 (3.15) BS01 rna ? GO:0003723 ... Q5SHP9 26791911
    114 5el4:H5 (3.15) BS01 rna ? GO:0003735 ... Q5SHQ6 26791911
    115 5el4:H5 (3.15) BS02 rna ? GO:0003735 ... Q5SHQ6 26791911
    116 5el4:H8 (3.15) BS01 rna ? GO:0003723 ... Q5SHZ1 26791911
    117 5el4:I8 (3.15) BS01 rna ? GO:0003735 ... P60493 26791911
    118 5el4:I8 (3.15) BS02 rna ? GO:0003735 ... P60493 26791911
    119 5el4:J5 (3.15) BS01 rna ? GO:0003735 ... P80339 26791911
    120 5el4:J8 (3.15) BS01 rna ? GO:0003735 ... P60494 26791911
    121 5el4:K8 (3.15) BS01 rna ? GO:0003735 ... Q5SHP6 26791911
    122 5el4:L5 (3.15) BS01 rna ? GO:0003735 ... P80340 26791911
    123 5el4:L8 (3.15) BS01 rna ? GO:0003735 ... Q5SHQ6 26791911
    124 5el4:L8 (3.15) BS02 rna ? GO:0003735 ... Q5SHQ6 26791911
    125 5el4:M5 (3.15) BS01 rna ? GO:0003735 ... Q5SKU1 26791911
    126 5el4:M8 (3.15) BS01 rna ? GO:0003735 ... Q5SJE1 26791911
    127 5el4:N8 (3.15) BS01 rna ? GO:0003735 ... P80339 26791911
    128 5el4:P8 (3.15) BS01 rna ? GO:0003735 ... P80340 26791911
    129 5el4:Q8 (3.15) BS01 rna ? GO:0003735 ... Q5SKU1 26791911
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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