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BioLiP
Download all results in tab-seperated text for 60 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5dzy:A (2.9) BS01 MAN ? GO:0005509 ... Q91XZ2 27161523
    2 5dzy:A (2.9) BS02 CA ? GO:0005509 ... Q91XZ2 27161523
    3 5dzy:A (2.9) BS03 CA ? GO:0005509 ... Q91XZ2 27161523
    4 5dzy:A (2.9) BS04 CA ? GO:0005509 ... Q91XZ2 27161523
    5 5dzy:A (2.9) BS05 CA ? GO:0005509 ... Q91XZ2 27161523
    6 5dzy:A (2.9) BS06 CA ? GO:0005509 ... Q91XZ2 27161523
    7 5dzy:A (2.9) BS07 CA ? GO:0005509 ... Q91XZ2 27161523
    8 5dzy:A (2.9) BS08 CA ? GO:0005509 ... Q91XZ2 27161523
    9 5dzy:A (2.9) BS09 CA ? GO:0005509 ... Q91XZ2 27161523
    10 5dzy:A (2.9) BS10 CA ? GO:0005509 ... Q91XZ2 27161523
    11 5dzy:B (2.9) BS01 MAN ? GO:0005509 ... Q91XZ2 27161523
    12 5dzy:B (2.9) BS02 CA ? GO:0005509 ... Q91XZ2 27161523
    13 5dzy:B (2.9) BS03 CA ? GO:0005509 ... Q91XZ2 27161523
    14 5dzy:B (2.9) BS04 CA ? GO:0005509 ... Q91XZ2 27161523
    15 5dzy:B (2.9) BS05 CA ? GO:0005509 ... Q91XZ2 27161523
    16 5dzy:B (2.9) BS06 CA ? GO:0005509 ... Q91XZ2 27161523
    17 5dzy:B (2.9) BS07 CA ? GO:0005509 ... Q91XZ2 27161523
    18 5dzy:B (2.9) BS08 CA ? GO:0005509 ... Q91XZ2 27161523
    19 5dzy:B (2.9) BS09 CA ? GO:0005509 ... Q91XZ2 27161523
    20 5dzy:B (2.9) BS10 CA ? GO:0005509 ... Q91XZ2 27161523
    21 5dzy:C (2.9) BS01 MAN ? GO:0005509 ... Q91XZ2 27161523
    22 5dzy:C (2.9) BS02 CA ? GO:0005509 ... Q91XZ2 27161523
    23 5dzy:C (2.9) BS03 CA ? GO:0005509 ... Q91XZ2 27161523
    24 5dzy:C (2.9) BS04 CA ? GO:0005509 ... Q91XZ2 27161523
    25 5dzy:C (2.9) BS05 CA ? GO:0005509 ... Q91XZ2 27161523
    26 5dzy:C (2.9) BS06 CA ? GO:0005509 ... Q91XZ2 27161523
    27 5dzy:C (2.9) BS07 CA ? GO:0005509 ... Q91XZ2 27161523
    28 5dzy:C (2.9) BS08 CA ? GO:0005509 ... Q91XZ2 27161523
    29 5dzy:C (2.9) BS09 CA ? GO:0005509 ... Q91XZ2 27161523
    30 5dzy:C (2.9) BS10 CA ? GO:0005509 ... Q91XZ2 27161523
    31 5dzy:D (2.9) BS01 FUC ? GO:0005509 ... Q91XZ2 27161523
    32 5dzy:D (2.9) BS02 MAN ? GO:0005509 ... Q91XZ2 27161523
    33 5dzy:D (2.9) BS03 CA ? GO:0005509 ... Q91XZ2 27161523
    34 5dzy:D (2.9) BS04 CA ? GO:0005509 ... Q91XZ2 27161523
    35 5dzy:D (2.9) BS05 CA ? GO:0005509 ... Q91XZ2 27161523
    36 5dzy:D (2.9) BS06 CA ? GO:0005509 ... Q91XZ2 27161523
    37 5dzy:D (2.9) BS07 CA ? GO:0005509 ... Q91XZ2 27161523
    38 5dzy:D (2.9) BS08 CA ? GO:0005509 ... Q91XZ2 27161523
    39 5dzy:D (2.9) BS09 CA ? GO:0005509 ... Q91XZ2 27161523
    40 5dzy:D (2.9) BS10 CA ? GO:0005509 ... Q91XZ2 27161523
    41 5dzy:D (2.9) BS11 CA ? GO:0005509 ... Q91XZ2 27161523
    42 5dzy:E (2.9) BS01 CA ? GO:0005509 ... Q91XZ2 27161523
    43 5dzy:E (2.9) BS02 CA ? GO:0005509 ... Q91XZ2 27161523
    44 5dzy:E (2.9) BS03 CA ? GO:0005509 ... Q91XZ2 27161523
    45 5dzy:E (2.9) BS04 CA ? GO:0005509 ... Q91XZ2 27161523
    46 5dzy:E (2.9) BS05 CA ? GO:0005509 ... Q91XZ2 27161523
    47 5dzy:E (2.9) BS06 CA ? GO:0005509 ... Q91XZ2 27161523
    48 5dzy:E (2.9) BS07 CA ? GO:0005509 ... Q91XZ2 27161523
    49 5dzy:E (2.9) BS08 CA ? GO:0005509 ... Q91XZ2 27161523
    50 5dzy:E (2.9) BS09 CA ? GO:0005509 ... Q91XZ2 27161523
    51 5dzy:F (2.9) BS01 MAN ? GO:0005509 ... Q91XZ2 27161523
    52 5dzy:F (2.9) BS02 CA ? GO:0005509 ... Q91XZ2 27161523
    53 5dzy:F (2.9) BS03 CA ? GO:0005509 ... Q91XZ2 27161523
    54 5dzy:F (2.9) BS04 CA ? GO:0005509 ... Q91XZ2 27161523
    55 5dzy:F (2.9) BS05 CA ? GO:0005509 ... Q91XZ2 27161523
    56 5dzy:F (2.9) BS06 CA ? GO:0005509 ... Q91XZ2 27161523
    57 5dzy:F (2.9) BS07 CA ? GO:0005509 ... Q91XZ2 27161523
    58 5dzy:F (2.9) BS08 CA ? GO:0005509 ... Q91XZ2 27161523
    59 5dzy:F (2.9) BS09 CA ? GO:0005509 ... Q91XZ2 27161523
    60 5dzy:F (2.9) BS10 CA ? GO:0005509 ... Q91XZ2 27161523
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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