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BioLiP
Download all results in tab-seperated text for 28 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5dzv:A (3.6) BS01 CA ? GO:0005509 ... Q91Y13 27161523
    2 5dzv:A (3.6) BS02 CA ? GO:0005509 ... Q91Y13 27161523
    3 5dzv:A (3.6) BS03 CA ? GO:0005509 ... Q91Y13 27161523
    4 5dzv:A (3.6) BS04 CA ? GO:0005509 ... Q91Y13 27161523
    5 5dzv:A (3.6) BS05 CA ? GO:0005509 ... Q91Y13 27161523
    6 5dzv:A (3.6) BS06 CA ? GO:0005509 ... Q91Y13 27161523
    7 5dzv:A (3.6) BS07 CA ? GO:0005509 ... Q91Y13 27161523
    8 5dzv:A (3.6) BS08 CA ? GO:0005509 ... Q91Y13 27161523
    9 5dzv:A (3.6) BS09 CA ? GO:0005509 ... Q91Y13 27161523
    10 5dzv:A (3.6) BS10 CA ? GO:0005509 ... Q91Y13 27161523
    11 5dzv:A (3.6) BS11 CA ? GO:0005509 ... Q91Y13 27161523
    12 5dzv:A (3.6) BS12 CA ? GO:0005509 ... Q91Y13 27161523
    13 5dzv:B (3.6) BS01 FUC ? GO:0005509 ... Q91Y13 27161523
    14 5dzv:B (3.6) BS02 CA ? GO:0005509 ... Q91Y13 27161523
    15 5dzv:B (3.6) BS03 CA ? GO:0005509 ... Q91Y13 27161523
    16 5dzv:B (3.6) BS04 CA ? GO:0005509 ... Q91Y13 27161523
    17 5dzv:B (3.6) BS05 CA ? GO:0005509 ... Q91Y13 27161523
    18 5dzv:B (3.6) BS06 CA ? GO:0005509 ... Q91Y13 27161523
    19 5dzv:B (3.6) BS07 CA ? GO:0005509 ... Q91Y13 27161523
    20 5dzv:B (3.6) BS08 CA ? GO:0005509 ... Q91Y13 27161523
    21 5dzv:B (3.6) BS09 CA ? GO:0005509 ... Q91Y13 27161523
    22 5dzv:B (3.6) BS10 CA ? GO:0005509 ... Q91Y13 27161523
    23 5dzv:B (3.6) BS11 CA ? GO:0005509 ... Q91Y13 27161523
    24 5dzv:B (3.6) BS12 CA ? GO:0005509 ... Q91Y13 27161523
    25 5dzv:B (3.6) BS13 CA ? GO:0005509 ... Q91Y13 27161523
    26 5dzv:B (3.6) BS14 MAN ? GO:0005509 ... Q91Y13 27161523
    27 5dzv:B (3.6) BS15 MAN ? GO:0005509 ... Q91Y13 27161523
    28 5dzv:B (3.6) BS16 MAN ? GO:0005509 ... Q91Y13 27161523
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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