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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 265 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5doy:10 (2.6) BS01 rna ? GO:0003735 ... P60493 26028538
    2 5doy:10 (2.6) BS02 rna ? GO:0003735 ... P60493 26028538
    3 5doy:10 (2.6) BS03 MG ? GO:0003735 ... P60493 26028538
    4 5doy:10 (2.6) BS04 MG ? GO:0003735 ... P60493 26028538
    5 5doy:10 (2.6) BS05 MG ? GO:0003735 ... P60493 26028538
    6 5doy:10 (2.6) BS06 MG ? GO:0003735 ... P60493 26028538
    7 5doy:11 (2.6) BS01 rna ? GO:0003735 ... P60494 26028538
    8 5doy:11 (2.6) BS02 rna ? GO:0003735 ... P60494 26028538
    9 5doy:12 (2.6) BS01 rna ? GO:0003735 ... Q5SHP6 26028538
    10 5doy:12 (2.6) BS02 MG ? GO:0003735 ... Q5SHP6 26028538
    11 5doy:13 (2.6) BS01 rna ? GO:0003735 ... Q5SHQ6 26028538
    12 5doy:13 (2.6) BS02 rna ? GO:0003735 ... Q5SHQ6 26028538
    13 5doy:13 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 26028538
    14 5doy:13 (2.6) BS04 MG ? GO:0003735 ... Q5SHQ6 26028538
    15 5doy:14 (2.6) BS01 rna ? GO:0003735 ... Q5SJE1 26028538
    16 5doy:14 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 26028538
    17 5doy:15 (2.6) BS01 rna ? GO:0003735 ... P80339 26028538
    18 5doy:15 (2.6) BS02 MG ? GO:0003735 ... P80339 26028538
    19 5doy:15 (2.6) BS03 ZN ? GO:0003735 ... P80339 26028538
    20 5doy:16 (2.6) BS01 rna ? GO:0000049 ... P35871 26028538
    21 5doy:16 (2.6) BS02 MG ? GO:0000049 ... P35871 26028538
    22 5doy:16 (2.6) BS03 ZN ? GO:0000049 ... P35871 26028538
    23 5doy:17 (2.6) BS01 rna ? GO:0003735 ... P80340 26028538
    24 5doy:17 (2.6) BS02 MG ? GO:0003735 ... P80340 26028538
    25 5doy:17 (2.6) BS03 MG ? GO:0003735 ... P80340 26028538
    26 5doy:17 (2.6) BS04 MG ? GO:0003735 ... P80340 26028538
    27 5doy:17 (2.6) BS05 MG ? GO:0003735 ... P80340 26028538
    28 5doy:18 (2.6) BS01 rna ? GO:0003735 ... Q5SKU1 26028538
    29 5doy:18 (2.6) BS02 MG ? GO:0003735 ... Q5SKU1 26028538
    30 5doy:18 (2.6) BS03 MG ? GO:0003735 ... Q5SKU1 26028538
    31 5doy:18 (2.6) BS04 MG ? GO:0003735 ... Q5SKU1 26028538
    32 5doy:19 (2.6) BS01 rna ? GO:0003735 ... Q5SHR2 26028538
    33 5doy:19 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 26028538
    34 5doy:1D (2.6) BS01 rna ? GO:0002181 ... P60405 26028538
    35 5doy:1D (2.6) BS02 rna ? GO:0002181 ... P60405 26028538
    36 5doy:1D (2.6) BS03 MG ? GO:0002181 ... P60405 26028538
    37 5doy:1D (2.6) BS04 MG ? GO:0002181 ... P60405 26028538
    38 5doy:1D (2.6) BS05 MG ? GO:0002181 ... P60405 26028538
    39 5doy:1D (2.6) BS06 MG ? GO:0002181 ... P60405 26028538
    40 5doy:1D (2.6) BS07 MG ? GO:0002181 ... P60405 26028538
    41 5doy:1D (2.6) BS08 MG ? GO:0002181 ... P60405 26028538
    42 5doy:1E (2.6) BS01 rna ? GO:0003735 ... Q5SHN8 26028538
    43 5doy:1E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 26028538
    44 5doy:1E (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 26028538
    45 5doy:1E (2.6) BS04 MG ? GO:0003735 ... Q5SHN8 26028538
    46 5doy:1F (2.6) BS01 rna ? GO:0003735 ... Q5SHN9 26028538
    47 5doy:1F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 26028538
    48 5doy:1F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 26028538
    49 5doy:1F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 26028538
    50 5doy:1F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 26028538
    51 5doy:1F (2.6) BS06 MG ? GO:0003735 ... Q5SHN9 26028538
    52 5doy:1F (2.6) BS07 MG ? GO:0003735 ... Q5SHN9 26028538
    53 5doy:1F (2.6) BS08 MG ? GO:0003735 ... Q5SHN9 26028538
    54 5doy:1F (2.6) BS09 MG ? GO:0003735 ... Q5SHN9 26028538
    55 5doy:1G (2.6) BS01 rna ? GO:0000049 ... Q5SHQ0 26028538
    56 5doy:1G (2.6) BS02 rna ? GO:0000049 ... Q5SHQ0 26028538
    57 5doy:1G (2.6) BS03 rna ? GO:0000049 ... Q5SHQ0 26028538
    58 5doy:1G (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 26028538
    59 5doy:1G (2.6) BS05 MG ? GO:0000049 ... Q5SHQ0 26028538
    60 5doy:1H (2.6) BS01 rna N/A GO:0003735 ... N/A 26028538
    61 5doy:1I (2.6) BS01 rna ? GO:0003735 ... Q5SLQ1 26028538
    62 5doy:1N (2.6) BS01 rna ? GO:0003729 ... P60488 26028538
    63 5doy:1N (2.6) BS02 MG ? GO:0003729 ... P60488 26028538
    64 5doy:1N (2.6) BS03 MG ? GO:0003729 ... P60488 26028538
    65 5doy:1N (2.6) BS04 MG ? GO:0003729 ... P60488 26028538
    66 5doy:1N (2.6) BS05 MG ? GO:0003729 ... P60488 26028538
    67 5doy:1N (2.6) BS06 MG ? GO:0003729 ... P60488 26028538
    68 5doy:1O (2.6) BS01 rna ? GO:0003735 ... Q5SHP8 26028538
    69 5doy:1O (2.6) BS02 rna ? GO:0003735 ... Q5SHP8 26028538
    70 5doy:1O (2.6) BS03 MG ? GO:0003735 ... Q5SHP8 26028538
    71 5doy:1P (2.6) BS01 rna ? GO:0003735 ... Q5SHQ7 26028538
    72 5doy:1P (2.6) BS02 MG ? GO:0003735 ... Q5SHQ7 26028538
    73 5doy:1P (2.6) BS03 MG ? GO:0003735 ... Q5SHQ7 26028538
    74 5doy:1P (2.6) BS04 MG ? GO:0003735 ... Q5SHQ7 26028538
    75 5doy:1P (2.6) BS05 MG ? GO:0003735 ... Q5SHQ7 26028538
    76 5doy:1P (2.6) BS06 MG ? GO:0003735 ... Q5SHQ7 26028538
    77 5doy:1Q (2.6) BS01 rna ? GO:0000049 ... P60489 26028538
    78 5doy:1Q (2.6) BS02 rna ? GO:0000049 ... P60489 26028538
    79 5doy:1Q (2.6) BS03 rna ? GO:0000049 ... P60489 26028538
    80 5doy:1Q (2.6) BS04 MG ? GO:0000049 ... P60489 26028538
    81 5doy:1Q (2.6) BS05 MG ? GO:0000049 ... P60489 26028538
    82 5doy:1Q (2.6) BS06 MG ? GO:0000049 ... P60489 26028538
    83 5doy:1Q (2.6) BS07 MG ? GO:0000049 ... P60489 26028538
    84 5doy:1Q (2.6) BS08 MG ? GO:0000049 ... P60489 26028538
    85 5doy:1R (2.6) BS01 rna ? GO:0003735 ... Q9Z9H5 26028538
    86 5doy:1R (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 26028538
    87 5doy:1R (2.6) BS03 MG ? GO:0003735 ... Q9Z9H5 26028538
    88 5doy:1R (2.6) BS04 MG ? GO:0003735 ... Q9Z9H5 26028538
    89 5doy:1S (2.6) BS01 rna ? GO:0003735 ... Q5SHQ4 26028538
    90 5doy:1S (2.6) BS02 rna ? GO:0003735 ... Q5SHQ4 26028538
    91 5doy:1S (2.6) BS03 MG ? GO:0003735 ... Q5SHQ4 26028538
    92 5doy:1T (2.6) BS01 rna ? GO:0003735 ... P60490 26028538
    93 5doy:1T (2.6) BS02 rna ? GO:0003735 ... P60490 26028538
    94 5doy:1T (2.6) BS03 MG ? GO:0003735 ... P60490 26028538
    95 5doy:1U (2.6) BS01 rna ? GO:0000027 ... P60491 26028538
    96 5doy:1U (2.6) BS02 MG ? GO:0000027 ... P60491 26028538
    97 5doy:1U (2.6) BS03 MG ? GO:0000027 ... P60491 26028538
    98 5doy:1U (2.6) BS04 MG ? GO:0000027 ... P60491 26028538
    99 5doy:1U (2.6) BS05 MG ? GO:0000027 ... P60491 26028538
    100 5doy:1U (2.6) BS06 MG ? GO:0000027 ... P60491 26028538
    101 5doy:1U (2.6) BS07 MG ? GO:0000027 ... P60491 26028538
    102 5doy:1U (2.6) BS08 MG ? GO:0000027 ... P60491 26028538
    103 5doy:1V (2.6) BS01 rna ? GO:0003723 ... P60492 26028538
    104 5doy:1V (2.6) BS02 MG ? GO:0003723 ... P60492 26028538
    105 5doy:1V (2.6) BS03 MG ? GO:0003723 ... P60492 26028538
    106 5doy:1V (2.6) BS04 MG ? GO:0003723 ... P60492 26028538
    107 5doy:1V (2.6) BS05 MG ? GO:0003723 ... P60492 26028538
    108 5doy:1V (2.6) BS06 MG ? GO:0003723 ... P60492 26028538
    109 5doy:1W (2.6) BS01 rna ? GO:0003735 ... Q5SHP3 26028538
    110 5doy:1W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 26028538
    111 5doy:1W (2.6) BS03 MG ? GO:0003735 ... Q5SHP3 26028538
    112 5doy:1W (2.6) BS04 MG ? GO:0003735 ... Q5SHP3 26028538
    113 5doy:1W (2.6) BS05 MG ? GO:0003735 ... Q5SHP3 26028538
    114 5doy:1W (2.6) BS06 MG ? GO:0003735 ... Q5SHP3 26028538
    115 5doy:1X (2.6) BS01 rna ? GO:0000027 ... Q5SHP0 26028538
    116 5doy:1X (2.6) BS02 MG ? GO:0000027 ... Q5SHP0 26028538
    117 5doy:1X (2.6) BS03 MG ? GO:0000027 ... Q5SHP0 26028538
    118 5doy:1X (2.6) BS04 MG ? GO:0000027 ... Q5SHP0 26028538
    119 5doy:1X (2.6) BS05 MG ? GO:0000027 ... Q5SHP0 26028538
    120 5doy:1X (2.6) BS06 MG ? GO:0000027 ... Q5SHP0 26028538
    121 5doy:1Y (2.6) BS01 rna ? GO:0003723 ... Q5SHP9 26028538
    122 5doy:1Y (2.6) BS02 MG ? GO:0003723 ... Q5SHP9 26028538
    123 5doy:1Y (2.6) BS03 ZN ? GO:0003723 ... Q5SHP9 26028538
    124 5doy:1Y (2.6) BS04 MG ? GO:0003723 ... Q5SHP9 26028538
    125 5doy:1Z (2.6) BS01 rna ? GO:0003723 ... Q5SHZ1 26028538
    126 5doy:1Z (2.6) BS02 rna ? GO:0003723 ... Q5SHZ1 26028538
    127 5doy:1b (2.6) BS01 rna ? GO:0003735 ... P80371 26028538
    128 5doy:1b (2.6) BS02 MG ? GO:0003735 ... P80371 26028538
    129 5doy:1b (2.6) BS03 MG ? GO:0003735 ... P80371 26028538
    130 5doy:1c (2.6) BS01 rna ? GO:0003676 ... P80372 26028538
    131 5doy:1d (2.6) BS01 rna ? GO:0003723 ... P80373 26028538
    132 5doy:1d (2.6) BS02 SF4 ? GO:0003723 ... P80373 26028538
    133 5doy:1d (2.6) BS03 MG ? GO:0003723 ... P80373 26028538
    134 5doy:1e (2.6) BS01 rna ? GO:0003723 ... Q5SHQ5 26028538
    135 5doy:1e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 26028538
    136 5doy:1e (2.6) BS03 MG ? GO:0003723 ... Q5SHQ5 26028538
    137 5doy:1f (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 26028538
    138 5doy:1g (2.6) BS01 rna ? GO:0000028 ... P17291 26028538
    139 5doy:1g (2.6) BS02 rna ? GO:0000028 ... P17291 26028538
    140 5doy:1h (2.6) BS01 rna N/A GO:0003735 ... N/A 26028538
    141 5doy:1i (2.6) BS01 rna ? GO:0000049 ... P80374 26028538
    142 5doy:1i (2.6) BS02 rna ? GO:0000049 ... P80374 26028538
    143 5doy:1j (2.6) BS01 rna ? GO:0000049 ... Q5SHN7 26028538
    144 5doy:1k (2.6) BS01 rna ? GO:0003735 ... P80376 26028538
    145 5doy:1k (2.6) BS02 MG ? GO:0003735 ... P80376 26028538
    146 5doy:1l (2.6) BS01 rna ? GO:0000049 ... Q5SHN3 26028538
    147 5doy:1l (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 26028538
    148 5doy:1m (2.6) BS01 rna ? GO:0000049 ... P80377 26028538
    149 5doy:1m (2.6) BS02 rna ? GO:0000049 ... P80377 26028538
    150 5doy:1m (2.6) BS03 rna ? GO:0000049 ... P80377 26028538
    151 5doy:1m (2.6) BS04 MG ? GO:0000049 ... P80377 26028538
    152 5doy:1n (2.6) BS01 rna N/A GO:0003735 ... N/A 26028538
    153 5doy:1n (2.6) BS02 ZN N/A GO:0003735 ... N/A 26028538
    154 5doy:1o (2.6) BS01 rna ? GO:0003735 ... Q5SJ76 26028538
    155 5doy:1o (2.6) BS02 rna ? GO:0003735 ... Q5SJ76 26028538
    156 5doy:1p (2.6) BS01 rna ? GO:0003735 ... Q5SJH3 26028538
    157 5doy:1q (2.6) BS01 rna N/A GO:0003735 ... N/A 26028538
    158 5doy:1r (2.6) BS01 rna ? GO:0003735 ... Q5SLQ0 26028538
    159 5doy:1s (2.6) BS01 rna ? GO:0000028 ... Q5SHP2 26028538
    160 5doy:1t (2.6) BS01 rna ? GO:0003723 ... P80380 26028538
    161 5doy:1t (2.6) BS02 MG ? GO:0003723 ... P80380 26028538
    162 5doy:20 (2.6) BS01 rna ? GO:0003735 ... P60493 26028538
    163 5doy:20 (2.6) BS02 rna ? GO:0003735 ... P60493 26028538
    164 5doy:21 (2.6) BS01 rna ? GO:0003735 ... P60494 26028538
    165 5doy:21 (2.6) BS02 rna ? GO:0003735 ... P60494 26028538
    166 5doy:22 (2.6) BS01 rna ? GO:0003735 ... Q5SHP6 26028538
    167 5doy:23 (2.6) BS01 rna ? GO:0003735 ... Q5SHQ6 26028538
    168 5doy:23 (2.6) BS02 rna ? GO:0003735 ... Q5SHQ6 26028538
    169 5doy:23 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 26028538
    170 5doy:24 (2.6) BS01 rna ? GO:0003735 ... Q5SJE1 26028538
    171 5doy:24 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 26028538
    172 5doy:25 (2.6) BS01 rna ? GO:0003735 ... P80339 26028538
    173 5doy:25 (2.6) BS02 MG ? GO:0003735 ... P80339 26028538
    174 5doy:25 (2.6) BS03 ZN ? GO:0003735 ... P80339 26028538
    175 5doy:26 (2.6) BS01 rna ? GO:0000049 ... P35871 26028538
    176 5doy:26 (2.6) BS02 ZN ? GO:0000049 ... P35871 26028538
    177 5doy:27 (2.6) BS01 rna ? GO:0003735 ... P80340 26028538
    178 5doy:28 (2.6) BS01 rna ? GO:0003735 ... Q5SKU1 26028538
    179 5doy:29 (2.6) BS01 rna ? GO:0003735 ... Q5SHR2 26028538
    180 5doy:29 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 26028538
    181 5doy:2D (2.6) BS01 rna ? GO:0002181 ... P60405 26028538
    182 5doy:2D (2.6) BS02 rna ? GO:0002181 ... P60405 26028538
    183 5doy:2D (2.6) BS03 MG ? GO:0002181 ... P60405 26028538
    184 5doy:2D (2.6) BS04 MG ? GO:0002181 ... P60405 26028538
    185 5doy:2D (2.6) BS05 MG ? GO:0002181 ... P60405 26028538
    186 5doy:2D (2.6) BS06 MG ? GO:0002181 ... P60405 26028538
    187 5doy:2D (2.6) BS07 MG ? GO:0002181 ... P60405 26028538
    188 5doy:2E (2.6) BS01 rna ? GO:0003735 ... Q5SHN8 26028538
    189 5doy:2E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 26028538
    190 5doy:2E (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 26028538
    191 5doy:2F (2.6) BS01 rna ? GO:0003735 ... Q5SHN9 26028538
    192 5doy:2F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 26028538
    193 5doy:2F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 26028538
    194 5doy:2F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 26028538
    195 5doy:2G (2.6) BS01 rna ? GO:0000049 ... Q5SHQ0 26028538
    196 5doy:2G (2.6) BS02 rna ? GO:0000049 ... Q5SHQ0 26028538
    197 5doy:2G (2.6) BS03 rna ? GO:0000049 ... Q5SHQ0 26028538
    198 5doy:2H (2.6) BS01 rna N/A GO:0003735 ... N/A 26028538
    199 5doy:2I (2.6) BS01 rna ? GO:0003735 ... Q5SLQ1 26028538
    200 5doy:2N (2.6) BS01 rna ? GO:0003729 ... P60488 26028538
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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