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BioLiP
Download all results in tab-seperated text for 253 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5czp:QB (3.29996) BS01 rna ? GO:0003735 ... P80371 27681416
    2 5czp:QB (3.29996) BS02 MG ? GO:0003735 ... P80371 27681416
    3 5czp:QC (3.29996) BS01 rna ? GO:0003676 ... P80372 27681416
    4 5czp:QD (3.29996) BS01 rna ? GO:0003723 ... P80373 27681416
    5 5czp:QD (3.29996) BS02 SF4 ? GO:0003723 ... P80373 27681416
    6 5czp:QE (3.29996) BS01 rna ? GO:0003723 ... Q5SHQ5 27681416
    7 5czp:QE (3.29996) BS02 MG ? GO:0003723 ... Q5SHQ5 27681416
    8 5czp:QF (3.29996) BS01 rna ? GO:0003735 ... Q5SLP8 27681416
    9 5czp:QF (3.29996) BS02 MG ? GO:0003735 ... Q5SLP8 27681416
    10 5czp:QG (3.29996) BS01 rna ? GO:0000028 ... P17291 27681416
    11 5czp:QH (3.29996) BS01 rna N/A GO:0003735 ... N/A 27681416
    12 5czp:QI (3.29996) BS01 rna ? GO:0000049 ... P80374 27681416
    13 5czp:QJ (3.29996) BS01 rna ? GO:0000049 ... Q5SHN7 27681416
    14 5czp:QK (3.29996) BS01 rna ? GO:0003735 ... P80376 27681416
    15 5czp:QK (3.29996) BS02 MG ? GO:0003735 ... P80376 27681416
    16 5czp:QL (3.29996) BS01 rna ? GO:0000049 ... Q5SHN3 27681416
    17 5czp:QM (3.29996) BS01 rna ? GO:0000049 ... P80377 27681416
    18 5czp:QN (3.29996) BS01 rna N/A GO:0003735 ... N/A 27681416
    19 5czp:QN (3.29996) BS02 ZN N/A GO:0003735 ... N/A 27681416
    20 5czp:QN (3.29996) BS03 MG N/A GO:0003735 ... N/A 27681416
    21 5czp:QO (3.29996) BS01 rna ? GO:0003735 ... Q5SJ76 27681416
    22 5czp:QO (3.29996) BS02 rna ? GO:0003735 ... Q5SJ76 27681416
    23 5czp:QP (3.29996) BS01 rna ? GO:0003735 ... Q5SJH3 27681416
    24 5czp:QQ (3.29996) BS01 rna N/A GO:0003735 ... N/A 27681416
    25 5czp:QR (3.29996) BS01 rna ? GO:0003735 ... Q5SLQ0 27681416
    26 5czp:QS (3.29996) BS01 rna ? GO:0000028 ... Q5SHP2 27681416
    27 5czp:QT (3.29996) BS01 rna ? GO:0003723 ... P80380 27681416
    28 5czp:QT (3.29996) BS02 MG ? GO:0003723 ... P80380 27681416
    29 5czp:QY (3.29996) BS01 rna ? GO:0003747 ... P07012 27681416
    30 5czp:QY (3.29996) BS02 rna ? GO:0003747 ... P07012 27681416
    31 5czp:QY (3.29996) BS03 rna ? GO:0003747 ... P07012 27681416
    32 5czp:QY (3.29996) BS04 rna ? GO:0003747 ... P07012 27681416
    33 5czp:QY (3.29996) BS05 MG ? GO:0003747 ... P07012 27681416
    34 5czp:R0 (3.29996) BS01 rna ? GO:0003735 ... P60493 27681416
    35 5czp:R0 (3.29996) BS02 rna ? GO:0003735 ... P60493 27681416
    36 5czp:R0 (3.29996) BS03 rna ? GO:0003735 ... P60493 27681416
    37 5czp:R0 (3.29996) BS04 MG ? GO:0003735 ... P60493 27681416
    38 5czp:R0 (3.29996) BS05 MG ? GO:0003735 ... P60493 27681416
    39 5czp:R0 (3.29996) BS06 MG ? GO:0003735 ... P60493 27681416
    40 5czp:R1 (3.29996) BS01 rna ? GO:0003735 ... P60494 27681416
    41 5czp:R1 (3.29996) BS02 MG ? GO:0003735 ... P60494 27681416
    42 5czp:R2 (3.29996) BS01 rna ? GO:0003735 ... Q5SHP6 27681416
    43 5czp:R3 (3.29996) BS01 rna ? GO:0003735 ... Q5SHQ6 27681416
    44 5czp:R3 (3.29996) BS02 rna ? GO:0003735 ... Q5SHQ6 27681416
    45 5czp:R3 (3.29996) BS03 MG ? GO:0003735 ... Q5SHQ6 27681416
    46 5czp:R3 (3.29996) BS04 MG ? GO:0003735 ... Q5SHQ6 27681416
    47 5czp:R3 (3.29996) BS05 MG ? GO:0003735 ... Q5SHQ6 27681416
    48 5czp:R3 (3.29996) BS06 MG ? GO:0003735 ... Q5SHQ6 27681416
    49 5czp:R4 (3.29996) BS01 rna ? GO:0003735 ... Q5SJE1 27681416
    50 5czp:R4 (3.29996) BS02 ZN ? GO:0003735 ... Q5SJE1 27681416
    51 5czp:R5 (3.29996) BS01 rna ? GO:0003735 ... P80339 27681416
    52 5czp:R5 (3.29996) BS02 MG ? GO:0003735 ... P80339 27681416
    53 5czp:R5 (3.29996) BS03 ZN ? GO:0003735 ... P80339 27681416
    54 5czp:R6 (3.29996) BS01 rna ? GO:0000049 ... P35871 27681416
    55 5czp:R6 (3.29996) BS02 ZN ? GO:0000049 ... P35871 27681416
    56 5czp:R7 (3.29996) BS01 rna ? GO:0003735 ... P80340 27681416
    57 5czp:R7 (3.29996) BS02 MG ? GO:0003735 ... P80340 27681416
    58 5czp:R7 (3.29996) BS03 MG ? GO:0003735 ... P80340 27681416
    59 5czp:R7 (3.29996) BS04 MG ? GO:0003735 ... P80340 27681416
    60 5czp:R8 (3.29996) BS01 rna ? GO:0003735 ... Q5SKU1 27681416
    61 5czp:R8 (3.29996) BS02 MG ? GO:0003735 ... Q5SKU1 27681416
    62 5czp:R8 (3.29996) BS03 MG ? GO:0003735 ... Q5SKU1 27681416
    63 5czp:R9 (3.29996) BS01 rna ? GO:0003735 ... Q5SHR2 27681416
    64 5czp:R9 (3.29996) BS02 ZN ? GO:0003735 ... Q5SHR2 27681416
    65 5czp:RD (3.29996) BS01 rna ? GO:0002181 ... P60405 27681416
    66 5czp:RD (3.29996) BS02 rna ? GO:0002181 ... P60405 27681416
    67 5czp:RD (3.29996) BS03 MG ? GO:0002181 ... P60405 27681416
    68 5czp:RD (3.29996) BS04 MG ? GO:0002181 ... P60405 27681416
    69 5czp:RD (3.29996) BS05 MG ? GO:0002181 ... P60405 27681416
    70 5czp:RD (3.29996) BS06 MG ? GO:0002181 ... P60405 27681416
    71 5czp:RD (3.29996) BS07 MG ? GO:0002181 ... P60405 27681416
    72 5czp:RD (3.29996) BS08 MG ? GO:0002181 ... P60405 27681416
    73 5czp:RD (3.29996) BS09 MG ? GO:0002181 ... P60405 27681416
    74 5czp:RD (3.29996) BS10 MG ? GO:0002181 ... P60405 27681416
    75 5czp:RD (3.29996) BS11 MG ? GO:0002181 ... P60405 27681416
    76 5czp:RD (3.29996) BS12 MG ? GO:0002181 ... P60405 27681416
    77 5czp:RD (3.29996) BS13 MG ? GO:0002181 ... P60405 27681416
    78 5czp:RE (3.29996) BS01 rna ? GO:0003735 ... Q5SHN8 27681416
    79 5czp:RE (3.29996) BS02 MG ? GO:0003735 ... Q5SHN8 27681416
    80 5czp:RE (3.29996) BS03 MG ? GO:0003735 ... Q5SHN8 27681416
    81 5czp:RE (3.29996) BS04 MG ? GO:0003735 ... Q5SHN8 27681416
    82 5czp:RE (3.29996) BS05 MG ? GO:0003735 ... Q5SHN8 27681416
    83 5czp:RF (3.29996) BS01 rna ? GO:0003735 ... Q5SHN9 27681416
    84 5czp:RF (3.29996) BS02 MG ? GO:0003735 ... Q5SHN9 27681416
    85 5czp:RF (3.29996) BS03 MG ? GO:0003735 ... Q5SHN9 27681416
    86 5czp:RF (3.29996) BS04 MG ? GO:0003735 ... Q5SHN9 27681416
    87 5czp:RF (3.29996) BS05 MG ? GO:0003735 ... Q5SHN9 27681416
    88 5czp:RF (3.29996) BS06 MG ? GO:0003735 ... Q5SHN9 27681416
    89 5czp:RF (3.29996) BS07 MG ? GO:0003735 ... Q5SHN9 27681416
    90 5czp:RF (3.29996) BS08 MG ? GO:0003735 ... Q5SHN9 27681416
    91 5czp:RF (3.29996) BS09 MG ? GO:0003735 ... Q5SHN9 27681416
    92 5czp:RF (3.29996) BS10 MG ? GO:0003735 ... Q5SHN9 27681416
    93 5czp:RF (3.29996) BS11 MG ? GO:0003735 ... Q5SHN9 27681416
    94 5czp:RF (3.29996) BS12 MG ? GO:0003735 ... Q5SHN9 27681416
    95 5czp:RF (3.29996) BS13 MG ? GO:0003735 ... Q5SHN9 27681416
    96 5czp:RF (3.29996) BS14 MG ? GO:0003735 ... Q5SHN9 27681416
    97 5czp:RG (3.29996) BS01 rna ? GO:0000049 ... Q5SHQ0 27681416
    98 5czp:RG (3.29996) BS02 rna ? GO:0000049 ... Q5SHQ0 27681416
    99 5czp:RG (3.29996) BS03 rna ? GO:0000049 ... Q5SHQ0 27681416
    100 5czp:RG (3.29996) BS04 MG ? GO:0000049 ... Q5SHQ0 27681416
    101 5czp:RG (3.29996) BS05 MG ? GO:0000049 ... Q5SHQ0 27681416
    102 5czp:RG (3.29996) BS06 MG ? GO:0000049 ... Q5SHQ0 27681416
    103 5czp:RH (3.29996) BS01 rna N/A GO:0003735 ... N/A 27681416
    104 5czp:RI (3.29996) BS01 rna ? GO:0003735 ... Q5SLQ1 27681416
    105 5czp:RN (3.29996) BS01 rna ? GO:0003729 ... P60488 27681416
    106 5czp:RN (3.29996) BS02 MG ? GO:0003729 ... P60488 27681416
    107 5czp:RN (3.29996) BS03 MG ? GO:0003729 ... P60488 27681416
    108 5czp:RO (3.29996) BS01 rna ? GO:0003735 ... Q5SHP8 27681416
    109 5czp:RO (3.29996) BS02 rna ? GO:0003735 ... Q5SHP8 27681416
    110 5czp:RP (3.29996) BS01 rna ? GO:0003735 ... Q5SHQ7 27681416
    111 5czp:RP (3.29996) BS02 MG ? GO:0003735 ... Q5SHQ7 27681416
    112 5czp:RP (3.29996) BS03 MG ? GO:0003735 ... Q5SHQ7 27681416
    113 5czp:RP (3.29996) BS04 MG ? GO:0003735 ... Q5SHQ7 27681416
    114 5czp:RQ (3.29996) BS01 rna ? GO:0000049 ... P60489 27681416
    115 5czp:RQ (3.29996) BS02 rna ? GO:0000049 ... P60489 27681416
    116 5czp:RQ (3.29996) BS03 MG ? GO:0000049 ... P60489 27681416
    117 5czp:RQ (3.29996) BS04 MG ? GO:0000049 ... P60489 27681416
    118 5czp:RQ (3.29996) BS05 MG ? GO:0000049 ... P60489 27681416
    119 5czp:RQ (3.29996) BS06 MG ? GO:0000049 ... P60489 27681416
    120 5czp:RQ (3.29996) BS07 MG ? GO:0000049 ... P60489 27681416
    121 5czp:RR (3.29996) BS01 rna ? GO:0003735 ... Q9Z9H5 27681416
    122 5czp:RR (3.29996) BS02 MG ? GO:0003735 ... Q9Z9H5 27681416
    123 5czp:RR (3.29996) BS03 MG ? GO:0003735 ... Q9Z9H5 27681416
    124 5czp:RR (3.29996) BS04 MG ? GO:0003735 ... Q9Z9H5 27681416
    125 5czp:RS (3.29996) BS01 rna ? GO:0003735 ... Q5SHQ4 27681416
    126 5czp:RS (3.29996) BS02 rna ? GO:0003735 ... Q5SHQ4 27681416
    127 5czp:RT (3.29996) BS01 rna ? GO:0003735 ... P60490 27681416
    128 5czp:RT (3.29996) BS02 rna ? GO:0003735 ... P60490 27681416
    129 5czp:RU (3.29996) BS01 rna ? GO:0000027 ... P60491 27681416
    130 5czp:RU (3.29996) BS02 MG ? GO:0000027 ... P60491 27681416
    131 5czp:RU (3.29996) BS03 MG ? GO:0000027 ... P60491 27681416
    132 5czp:RU (3.29996) BS04 MG ? GO:0000027 ... P60491 27681416
    133 5czp:RU (3.29996) BS05 MG ? GO:0000027 ... P60491 27681416
    134 5czp:RU (3.29996) BS06 MG ? GO:0000027 ... P60491 27681416
    135 5czp:RV (3.29996) BS01 rna ? GO:0003723 ... P60492 27681416
    136 5czp:RV (3.29996) BS02 MG ? GO:0003723 ... P60492 27681416
    137 5czp:RV (3.29996) BS03 MG ? GO:0003723 ... P60492 27681416
    138 5czp:RV (3.29996) BS04 MG ? GO:0003723 ... P60492 27681416
    139 5czp:RW (3.29996) BS01 rna ? GO:0003735 ... Q5SHP3 27681416
    140 5czp:RW (3.29996) BS02 MG ? GO:0003735 ... Q5SHP3 27681416
    141 5czp:RX (3.29996) BS01 rna ? GO:0000027 ... Q5SHP0 27681416
    142 5czp:RY (3.29996) BS01 rna ? GO:0003723 ... Q5SHP9 27681416
    143 5czp:RY (3.29996) BS02 ZN ? GO:0003723 ... Q5SHP9 27681416
    144 5czp:RZ (3.29996) BS01 rna ? GO:0003723 ... Q5SHZ1 27681416
    145 5czp:RZ (3.29996) BS02 rna ? GO:0003723 ... Q5SHZ1 27681416
    146 5czp:RZ (3.29996) BS03 rna ? GO:0003723 ... Q5SHZ1 27681416
    147 5czp:XB (3.29996) BS01 rna ? GO:0003735 ... P80371 27681416
    148 5czp:XC (3.29996) BS01 rna ? GO:0003676 ... P80372 27681416
    149 5czp:XD (3.29996) BS01 rna ? GO:0003723 ... P80373 27681416
    150 5czp:XD (3.29996) BS02 SF4 ? GO:0003723 ... P80373 27681416
    151 5czp:XE (3.29996) BS01 rna ? GO:0003723 ... Q5SHQ5 27681416
    152 5czp:XE (3.29996) BS02 MG ? GO:0003723 ... Q5SHQ5 27681416
    153 5czp:XF (3.29996) BS01 rna ? GO:0003735 ... Q5SLP8 27681416
    154 5czp:XF (3.29996) BS02 MG ? GO:0003735 ... Q5SLP8 27681416
    155 5czp:XG (3.29996) BS01 rna ? GO:0000028 ... P17291 27681416
    156 5czp:XH (3.29996) BS01 rna N/A GO:0003735 ... N/A 27681416
    157 5czp:XI (3.29996) BS01 rna ? GO:0000049 ... P80374 27681416
    158 5czp:XJ (3.29996) BS01 rna ? GO:0000049 ... Q5SHN7 27681416
    159 5czp:XJ (3.29996) BS02 MG ? GO:0000049 ... Q5SHN7 27681416
    160 5czp:XK (3.29996) BS01 rna ? GO:0003735 ... P80376 27681416
    161 5czp:XL (3.29996) BS01 rna ? GO:0000049 ... Q5SHN3 27681416
    162 5czp:XM (3.29996) BS01 rna ? GO:0000049 ... P80377 27681416
    163 5czp:XN (3.29996) BS01 rna N/A GO:0003735 ... N/A 27681416
    164 5czp:XN (3.29996) BS02 ZN N/A GO:0003735 ... N/A 27681416
    165 5czp:XO (3.29996) BS01 rna ? GO:0003735 ... Q5SJ76 27681416
    166 5czp:XO (3.29996) BS02 rna ? GO:0003735 ... Q5SJ76 27681416
    167 5czp:XP (3.29996) BS01 rna ? GO:0003735 ... Q5SJH3 27681416
    168 5czp:XQ (3.29996) BS01 rna N/A GO:0003735 ... N/A 27681416
    169 5czp:XR (3.29996) BS01 rna ? GO:0003735 ... Q5SLQ0 27681416
    170 5czp:XS (3.29996) BS01 rna ? GO:0000028 ... Q5SHP2 27681416
    171 5czp:XT (3.29996) BS01 rna ? GO:0003723 ... P80380 27681416
    172 5czp:XT (3.29996) BS02 MG ? GO:0003723 ... P80380 27681416
    173 5czp:XY (3.29996) BS01 rna ? GO:0003747 ... P07012 27681416
    174 5czp:XY (3.29996) BS02 rna ? GO:0003747 ... P07012 27681416
    175 5czp:XY (3.29996) BS03 rna ? GO:0003747 ... P07012 27681416
    176 5czp:XY (3.29996) BS04 rna ? GO:0003747 ... P07012 27681416
    177 5czp:XY (3.29996) BS05 MG ? GO:0003747 ... P07012 27681416
    178 5czp:XY (3.29996) BS06 MG ? GO:0003747 ... P07012 27681416
    179 5czp:Y0 (3.29996) BS01 rna ? GO:0003735 ... P60493 27681416
    180 5czp:Y0 (3.29996) BS02 rna ? GO:0003735 ... P60493 27681416
    181 5czp:Y0 (3.29996) BS03 rna ? GO:0003735 ... P60493 27681416
    182 5czp:Y1 (3.29996) BS01 rna ? GO:0003735 ... P60494 27681416
    183 5czp:Y2 (3.29996) BS01 rna ? GO:0003735 ... Q5SHP6 27681416
    184 5czp:Y3 (3.29996) BS01 rna ? GO:0003735 ... Q5SHQ6 27681416
    185 5czp:Y3 (3.29996) BS02 rna ? GO:0003735 ... Q5SHQ6 27681416
    186 5czp:Y4 (3.29996) BS01 rna ? GO:0003735 ... Q5SJE1 27681416
    187 5czp:Y4 (3.29996) BS02 ZN ? GO:0003735 ... Q5SJE1 27681416
    188 5czp:Y5 (3.29996) BS01 rna ? GO:0003735 ... P80339 27681416
    189 5czp:Y5 (3.29996) BS02 MG ? GO:0003735 ... P80339 27681416
    190 5czp:Y5 (3.29996) BS03 MG ? GO:0003735 ... P80339 27681416
    191 5czp:Y5 (3.29996) BS04 ZN ? GO:0003735 ... P80339 27681416
    192 5czp:Y6 (3.29996) BS01 rna ? GO:0000049 ... P35871 27681416
    193 5czp:Y6 (3.29996) BS02 ZN ? GO:0000049 ... P35871 27681416
    194 5czp:Y7 (3.29996) BS01 rna ? GO:0003735 ... P80340 27681416
    195 5czp:Y7 (3.29996) BS02 MG ? GO:0003735 ... P80340 27681416
    196 5czp:Y8 (3.29996) BS01 rna ? GO:0003735 ... Q5SKU1 27681416
    197 5czp:Y9 (3.29996) BS01 rna ? GO:0003735 ... Q5SHR2 27681416
    198 5czp:Y9 (3.29996) BS02 ZN ? GO:0003735 ... Q5SHR2 27681416
    199 5czp:YD (3.29996) BS01 rna ? GO:0002181 ... P60405 27681416
    200 5czp:YD (3.29996) BS02 rna ? GO:0002181 ... P60405 27681416
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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