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BioLiP
Download all results in tab-seperated text for 24 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5cnv:A (3.2) BS01 GDP 1.17.4.1 GO:0004748 ... P00452 26754917
    2 5cnv:A (3.2) BS02 DAT 1.17.4.1 GO:0004748 ... P00452 26754917
    3 5cnv:A (3.2) BS03 TTP 1.17.4.1 GO:0004748 ... P00452 26754917
    4 5cnv:A (3.2) BS04 TTP 1.17.4.1 GO:0004748 ... P00452 26754917
    5 5cnv:A (3.2) BS05 TTP 1.17.4.1 GO:0004748 ... P00452 26754917
    6 5cnv:B (3.2) BS01 TTP 1.17.4.1 GO:0004748 ... P00452 26754917
    7 5cnv:B (3.2) BS02 GDP 1.17.4.1 GO:0004748 ... P00452 26754917
    8 5cnv:B (3.2) BS03 DAT 1.17.4.1 GO:0004748 ... P00452 26754917
    9 5cnv:B (3.2) BS04 TTP 1.17.4.1 GO:0004748 ... P00452 26754917
    10 5cnv:B (3.2) BS05 TTP 1.17.4.1 GO:0004748 ... P00452 26754917
    11 5cnv:C (3.2) BS01 GDP 1.17.4.1 GO:0004748 ... P00452 26754917
    12 5cnv:C (3.2) BS02 DAT 1.17.4.1 GO:0004748 ... P00452 26754917
    13 5cnv:C (3.2) BS03 TTP 1.17.4.1 GO:0004748 ... P00452 26754917
    14 5cnv:C (3.2) BS04 TTP 1.17.4.1 GO:0004748 ... P00452 26754917
    15 5cnv:C (3.2) BS05 TTP 1.17.4.1 GO:0004748 ... P00452 26754917
    16 5cnv:D (3.2) BS01 TTP 1.17.4.1 GO:0004748 ... P00452 26754917
    17 5cnv:D (3.2) BS02 GDP 1.17.4.1 GO:0004748 ... P00452 26754917
    18 5cnv:D (3.2) BS03 DAT 1.17.4.1 GO:0004748 ... P00452 26754917
    19 5cnv:D (3.2) BS04 TTP 1.17.4.1 GO:0004748 ... P00452 26754917
    20 5cnv:D (3.2) BS05 TTP 1.17.4.1 GO:0004748 ... P00452 26754917
    21 5cnv:E (3.2) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 26754917
    22 5cnv:F (3.2) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 26754917
    23 5cnv:G (3.2) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 26754917
    24 5cnv:H (3.2) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 26754917
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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