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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5boy:A (2.03) BS01 ZN 3.4.24.- GO:0004222 ... P45452 22017539
    2 5boy:A (2.03) BS02 ZN 3.4.24.- GO:0004222 ... P45452 22017539
    3 5boy:A (2.03) BS03 CA 3.4.24.- GO:0004222 ... P45452 22017539
    4 5boy:A (2.03) BS04 CA 3.4.24.- GO:0004222 ... P45452 22017539
    5 5boy:A (2.03) BS05 CA 3.4.24.- GO:0004222 ... P45452 22017539
    6 5boy:A (2.03) BS06 4UE 3.4.24.- GO:0004222 ... P45452 22017539 MOAD: ic50=2.5uM
    PDBbind: -logKd/Ki=5.60, IC50=2.5uM
    BindingDB: IC50=2500nM
    7 5boy:B (2.03) BS01 ZN 3.4.24.- GO:0004222 ... P45452 22017539
    8 5boy:B (2.03) BS02 ZN 3.4.24.- GO:0004222 ... P45452 22017539
    9 5boy:B (2.03) BS03 CA 3.4.24.- GO:0004222 ... P45452 22017539
    10 5boy:B (2.03) BS04 CA 3.4.24.- GO:0004222 ... P45452 22017539
    11 5boy:B (2.03) BS05 CA 3.4.24.- GO:0004222 ... P45452 22017539
    12 5boy:B (2.03) BS06 4UE 3.4.24.- GO:0004222 ... P45452 22017539 MOAD: ic50=2.5uM
    BindingDB: IC50=2500nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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