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BioLiP
Download all results in tab-seperated text for 39 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5bkn:A (3.0) BS01 rna ? GO:0005198 ... P17574 34866603
    2 5bkn:A (3.0) BS02 MG ? GO:0005198 ... P17574 34866603
    3 5bkn:B (3.0) BS01 MG ? GO:0005198 ... P17574 34866603
    4 5bkn:D (3.0) BS01 rna ? GO:0005198 ... P17574 34866603
    5 5bkn:D (3.0) BS02 rna ? GO:0005198 ... P17574 34866603
    6 5bkn:D (3.0) BS03 rna ? GO:0005198 ... P17574 34866603
    7 5bkn:E (3.0) BS01 rna ? GO:0005198 ... P17574 34866603
    8 5bkn:E (3.0) BS02 rna ? GO:0005198 ... P17574 34866603
    9 5bkn:E (3.0) BS03 rna ? GO:0005198 ... P17574 34866603
    10 5bkn:F (3.0) BS01 rna ? GO:0005198 ... P17574 34866603
    11 5bkn:F (3.0) BS02 rna ? GO:0005198 ... P17574 34866603
    12 5bkn:F (3.0) BS03 MG ? GO:0005198 ... P17574 34866603
    13 5bkn:G (3.0) BS01 rna ? GO:0005198 ... P17574 34866603
    14 5bkn:G (3.0) BS02 rna ? GO:0005198 ... P17574 34866603
    15 5bkn:G (3.0) BS03 MG ? GO:0005198 ... P17574 34866603
    16 5bkn:GG (3.0) BS01 rna ? GO:0005198 ... P17574 34866603
    17 5bkn:GG (3.0) BS02 rna ? GO:0005198 ... P17574 34866603
    18 5bkn:GG (3.0) BS03 rna ? GO:0005198 ... P17574 34866603
    19 5bkn:H (3.0) BS01 MG ? GO:0005198 ... P17574 34866603
    20 5bkn:HH (3.0) BS01 rna ? GO:0005198 ... P17574 34866603
    21 5bkn:HH (3.0) BS02 rna ? GO:0005198 ... P17574 34866603
    22 5bkn:HH (3.0) BS03 rna ? GO:0005198 ... P17574 34866603
    23 5bkn:I (3.0) BS01 rna ? GO:0005198 ... P17574 34866603
    24 5bkn:II (3.0) BS01 rna ? GO:0005198 ... P17574 34866603
    25 5bkn:II (3.0) BS02 MG ? GO:0005198 ... P17574 34866603
    26 5bkn:J (3.0) BS01 rna ? GO:0005198 ... P17574 34866603
    27 5bkn:J (3.0) BS02 MG ? GO:0005198 ... P17574 34866603
    28 5bkn:JJ (3.0) BS01 MG ? GO:0005198 ... P17574 34866603
    29 5bkn:K (3.0) BS01 rna ? GO:0005198 ... P17574 34866603
    30 5bkn:K (3.0) BS02 rna ? GO:0005198 ... P17574 34866603
    31 5bkn:K (3.0) BS03 MG ? GO:0005198 ... P17574 34866603
    32 5bkn:K (3.0) BS04 MG ? GO:0005198 ... P17574 34866603
    33 5bkn:K (3.0) BS05 MG ? GO:0005198 ... P17574 34866603
    34 5bkn:KK (3.0) BS01 rna ? GO:0005198 ... P17574 34866603
    35 5bkn:L (3.0) BS01 MG ? GO:0005198 ... P17574 34866603
    36 5bkn:M (3.0) BS01 MG ? GO:0005198 ... P17574 34866603
    37 5bkn:O (3.0) BS01 rna ? GO:0005198 ... P17574 34866603
    38 5bkn:O (3.0) BS02 rna ? GO:0005198 ... P17574 34866603
    39 5bkn:O (3.0) BS03 MG ? GO:0005198 ... P17574 34866603
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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