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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 300 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5b5n:0 (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    2 5b5n:0 (3.3) BS02 CRT ? GO:0005515 ... D2Z0P1 27933779
    3 5b5n:0 (3.3) BS03 BCL ? GO:0005515 ... D2Z0P1 27933779
    4 5b5n:1 (3.3) BS01 BCL ? GO:0005515 ... D2Z0P2 27933779
    5 5b5n:1 (3.3) BS02 CRT ? GO:0005515 ... D2Z0P2 27933779
    6 5b5n:1 (3.3) BS03 BCL ? GO:0005515 ... D2Z0P2 27933779
    7 5b5n:1 (3.3) BS04 BCL ? GO:0005515 ... D2Z0P2 27933779
    8 5b5n:1 (3.3) BS05 CRT ? GO:0005515 ... D2Z0P2 27933779
    9 5b5n:2 (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    10 5b5n:2 (3.3) BS02 CRT ? GO:0005515 ... D2Z0P1 27933779
    11 5b5n:2 (3.3) BS03 BCL ? GO:0005515 ... D2Z0P1 27933779
    12 5b5n:3 (3.3) BS01 BCL ? GO:0005515 ... D2Z0P2 27933779
    13 5b5n:3 (3.3) BS02 CRT ? GO:0005515 ... D2Z0P2 27933779
    14 5b5n:3 (3.3) BS03 BCL ? GO:0005515 ... D2Z0P2 27933779
    15 5b5n:3 (3.3) BS04 CRT ? GO:0005515 ... D2Z0P2 27933779
    16 5b5n:4 (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    17 5b5n:4 (3.3) BS02 CRT ? GO:0005515 ... D2Z0P1 27933779
    18 5b5n:4 (3.3) BS03 BCL ? GO:0005515 ... D2Z0P1 27933779
    19 5b5n:5 (3.3) BS01 BCL ? GO:0005515 ... D2Z0P2 27933779
    20 5b5n:5 (3.3) BS02 BCL ? GO:0005515 ... D2Z0P2 27933779
    21 5b5n:5 (3.3) BS03 CRT ? GO:0005515 ... D2Z0P2 27933779
    22 5b5n:5 (3.3) BS04 CRT ? GO:0005515 ... D2Z0P2 27933779
    23 5b5n:6 (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    24 5b5n:6 (3.3) BS02 BCL ? GO:0005515 ... D2Z0P1 27933779
    25 5b5n:6 (3.3) BS03 CRT ? GO:0005515 ... D2Z0P1 27933779
    26 5b5n:6 (3.3) BS04 BCL ? GO:0005515 ... D2Z0P1 27933779
    27 5b5n:7 (3.3) BS01 CRT ? GO:0005515 ... D2Z0P2 27933779
    28 5b5n:7 (3.3) BS02 BCL ? GO:0005515 ... D2Z0P2 27933779
    29 5b5n:7 (3.3) BS03 CRT ? GO:0005515 ... D2Z0P2 27933779
    30 5b5n:7 (3.3) BS04 BCL ? GO:0005515 ... D2Z0P2 27933779
    31 5b5n:8 (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    32 5b5n:8 (3.3) BS02 CRT ? GO:0005515 ... D2Z0P1 27933779
    33 5b5n:8 (3.3) BS03 BCL ? GO:0005515 ... D2Z0P1 27933779
    34 5b5n:9 (3.3) BS01 BCL ? GO:0005515 ... D2Z0P2 27933779
    35 5b5n:9 (3.3) BS02 CRT ? GO:0005515 ... D2Z0P2 27933779
    36 5b5n:9 (3.3) BS03 CRT ? GO:0005515 ... D2Z0P2 27933779
    37 5b5n:9 (3.3) BS04 BCL ? GO:0005515 ... D2Z0P2 27933779
    38 5b5n:9 (3.3) BS05 CRT ? GO:0005515 ... D2Z0P2 27933779
    39 5b5n:9 (3.3) BS06 BCL ? GO:0005515 ... D2Z0P2 27933779
    40 5b5n:A (3.3) BS01 BCL ? GO:0005515 ... D2Z0P2 27933779
    41 5b5n:A (3.3) BS02 BCL ? GO:0005515 ... D2Z0P2 27933779
    42 5b5n:A (3.3) BS03 CRT ? GO:0005515 ... D2Z0P2 27933779
    43 5b5n:A (3.3) BS04 CRT ? GO:0005515 ... D2Z0P2 27933779
    44 5b5n:A (3.3) BS05 CRT ? GO:0005515 ... D2Z0P2 27933779
    45 5b5n:AA (3.3) BS01 CRT ? GO:0005515 ... D2Z0P2 27933779
    46 5b5n:AA (3.3) BS02 CRT ? GO:0005515 ... D2Z0P2 27933779
    47 5b5n:AA (3.3) BS03 BCL ? GO:0005515 ... D2Z0P2 27933779
    48 5b5n:AA (3.3) BS04 BCL ? GO:0005515 ... D2Z0P2 27933779
    49 5b5n:AA (3.3) BS05 CRT ? GO:0005515 ... D2Z0P2 27933779
    50 5b5n:AA (3.3) BS06 CRT ? GO:0005515 ... D2Z0P2 27933779
    51 5b5n:AB (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    52 5b5n:AB (3.3) BS02 BCL ? GO:0005515 ... D2Z0P1 27933779
    53 5b5n:AB (3.3) BS03 CRT ? GO:0005515 ... D2Z0P1 27933779
    54 5b5n:AC (3.3) BS01 CRT ? GO:0005515 ... D2Z0P2 27933779
    55 5b5n:AC (3.3) BS02 BCL ? GO:0005515 ... D2Z0P2 27933779
    56 5b5n:AC (3.3) BS03 BCL ? GO:0005515 ... D2Z0P2 27933779
    57 5b5n:AC (3.3) BS04 CRT ? GO:0005515 ... D2Z0P2 27933779
    58 5b5n:AD (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    59 5b5n:AD (3.3) BS02 BCL ? GO:0005515 ... D2Z0P1 27933779
    60 5b5n:AD (3.3) BS03 CRT ? GO:0005515 ... D2Z0P1 27933779
    61 5b5n:AE (3.3) BS01 CRT ? GO:0005515 ... D2Z0P2 27933779
    62 5b5n:AE (3.3) BS02 PGW ? GO:0005515 ... D2Z0P2 27933779
    63 5b5n:AE (3.3) BS03 BCL ? GO:0005515 ... D2Z0P2 27933779
    64 5b5n:AE (3.3) BS04 BCL ? GO:0005515 ... D2Z0P2 27933779
    65 5b5n:AE (3.3) BS05 CRT ? GO:0005515 ... D2Z0P2 27933779
    66 5b5n:AE (3.3) BS06 CRT ? GO:0005515 ... D2Z0P2 27933779
    67 5b5n:AF (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    68 5b5n:AF (3.3) BS02 BCL ? GO:0005515 ... D2Z0P1 27933779
    69 5b5n:AF (3.3) BS03 CRT ? GO:0005515 ... D2Z0P1 27933779
    70 5b5n:AG (3.3) BS01 CRT ? GO:0005515 ... D2Z0P2 27933779
    71 5b5n:AG (3.3) BS02 BCL ? GO:0005515 ... D2Z0P2 27933779
    72 5b5n:AG (3.3) BS03 BCL ? GO:0005515 ... D2Z0P2 27933779
    73 5b5n:AG (3.3) BS04 CRT ? GO:0005515 ... D2Z0P2 27933779
    74 5b5n:AG (3.3) BS05 CRT ? GO:0005515 ... D2Z0P2 27933779
    75 5b5n:AH (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    76 5b5n:AH (3.3) BS02 BCL ? GO:0005515 ... D2Z0P1 27933779
    77 5b5n:AH (3.3) BS03 CRT ? GO:0005515 ... D2Z0P1 27933779
    78 5b5n:AI (3.3) BS01 CRT ? GO:0005515 ... D2Z0P2 27933779
    79 5b5n:AI (3.3) BS02 BCL ? GO:0005515 ... D2Z0P2 27933779
    80 5b5n:AI (3.3) BS03 BCL ? GO:0005515 ... D2Z0P2 27933779
    81 5b5n:AI (3.3) BS04 CRT ? GO:0005515 ... D2Z0P2 27933779
    82 5b5n:AI (3.3) BS05 CRT ? GO:0005515 ... D2Z0P2 27933779
    83 5b5n:AJ (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    84 5b5n:AJ (3.3) BS02 BCL ? GO:0005515 ... D2Z0P1 27933779
    85 5b5n:AJ (3.3) BS03 CRT ? GO:0005515 ... D2Z0P1 27933779
    86 5b5n:AK (3.3) BS01 BCL ? GO:0005515 ... D2Z0P2 27933779
    87 5b5n:AK (3.3) BS02 CRT ? GO:0005515 ... D2Z0P2 27933779
    88 5b5n:AK (3.3) BS03 BCL ? GO:0005515 ... D2Z0P2 27933779
    89 5b5n:AK (3.3) BS04 BCL ? GO:0005515 ... D2Z0P2 27933779
    90 5b5n:AK (3.3) BS05 CRT ? GO:0005515 ... D2Z0P2 27933779
    91 5b5n:AL (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    92 5b5n:AL (3.3) BS02 CRT ? GO:0005515 ... D2Z0P1 27933779
    93 5b5n:AL (3.3) BS03 BCL ? GO:0005515 ... D2Z0P1 27933779
    94 5b5n:B (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    95 5b5n:B (3.3) BS02 BCL ? GO:0005515 ... D2Z0P1 27933779
    96 5b5n:B (3.3) BS03 CRT ? GO:0005515 ... D2Z0P1 27933779
    97 5b5n:C (3.3) BS01 HEM ? GO:0005506 ... D2Z0P5 27933779
    98 5b5n:C (3.3) BS02 HEM ? GO:0005506 ... D2Z0P5 27933779
    99 5b5n:C (3.3) BS03 HEM ? GO:0005506 ... D2Z0P5 27933779
    100 5b5n:C (3.3) BS04 HEM ? GO:0005506 ... D2Z0P5 27933779
    101 5b5n:D (3.3) BS01 BCL ? GO:0005515 ... D2Z0P2 27933779
    102 5b5n:D (3.3) BS02 BCL ? GO:0005515 ... D2Z0P2 27933779
    103 5b5n:D (3.3) BS03 CRT ? GO:0005515 ... D2Z0P2 27933779
    104 5b5n:D (3.3) BS04 CRT ? GO:0005515 ... D2Z0P2 27933779
    105 5b5n:E (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    106 5b5n:E (3.3) BS02 BCL ? GO:0005515 ... D2Z0P1 27933779
    107 5b5n:E (3.3) BS03 CRT ? GO:0005515 ... D2Z0P1 27933779
    108 5b5n:F (3.3) BS01 CRT ? GO:0005515 ... D2Z0P2 27933779
    109 5b5n:F (3.3) BS02 BCL ? GO:0005515 ... D2Z0P2 27933779
    110 5b5n:F (3.3) BS03 CRT ? GO:0005515 ... D2Z0P2 27933779
    111 5b5n:F (3.3) BS04 BCL ? GO:0005515 ... D2Z0P2 27933779
    112 5b5n:F (3.3) BS05 CRT ? GO:0005515 ... D2Z0P2 27933779
    113 5b5n:G (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    114 5b5n:G (3.3) BS02 CRT ? GO:0005515 ... D2Z0P1 27933779
    115 5b5n:G (3.3) BS03 BCL ? GO:0005515 ... D2Z0P1 27933779
    116 5b5n:I (3.3) BS01 CRT ? GO:0005515 ... D2Z0P2 27933779
    117 5b5n:I (3.3) BS02 BCL ? GO:0005515 ... D2Z0P2 27933779
    118 5b5n:I (3.3) BS03 CRT ? GO:0005515 ... D2Z0P2 27933779
    119 5b5n:I (3.3) BS04 BCL ? GO:0005515 ... D2Z0P2 27933779
    120 5b5n:I (3.3) BS05 CRT ? GO:0005515 ... D2Z0P2 27933779
    121 5b5n:J (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    122 5b5n:J (3.3) BS02 CRT ? GO:0005515 ... D2Z0P1 27933779
    123 5b5n:J (3.3) BS03 BCL ? GO:0005515 ... D2Z0P1 27933779
    124 5b5n:K (3.3) BS01 CRT ? GO:0005515 ... D2Z0P2 27933779
    125 5b5n:K (3.3) BS02 BCL ? GO:0005515 ... D2Z0P2 27933779
    126 5b5n:K (3.3) BS03 BCL ? GO:0005515 ... D2Z0P2 27933779
    127 5b5n:K (3.3) BS04 CRT ? GO:0005515 ... D2Z0P2 27933779
    128 5b5n:L (3.3) BS01 BCL ? GO:0005515 ... D2Z0P3 27933779
    129 5b5n:L (3.3) BS02 BPH ? GO:0005515 ... D2Z0P3 27933779
    130 5b5n:L (3.3) BS03 BCL ? GO:0005515 ... D2Z0P3 27933779
    131 5b5n:L (3.3) BS04 UQ8 ? GO:0005515 ... D2Z0P3 27933779
    132 5b5n:L (3.3) BS05 FE ? GO:0005515 ... D2Z0P3 27933779
    133 5b5n:L (3.3) BS06 BCL ? GO:0005515 ... D2Z0P3 27933779
    134 5b5n:L (3.3) BS07 BCL ? GO:0005515 ... D2Z0P3 27933779
    135 5b5n:L (3.3) BS08 BPH ? GO:0005515 ... D2Z0P3 27933779
    136 5b5n:L (3.3) BS09 MQ8 ? GO:0005515 ... D2Z0P3 27933779
    137 5b5n:M (3.3) BS01 HEM ? GO:0005515 ... A8ASG6 27933779
    138 5b5n:M (3.3) BS02 BPH ? GO:0005515 ... A8ASG6 27933779
    139 5b5n:M (3.3) BS03 BCL ? GO:0005515 ... A8ASG6 27933779
    140 5b5n:M (3.3) BS04 FE ? GO:0005515 ... A8ASG6 27933779
    141 5b5n:M (3.3) BS05 BCL ? GO:0005515 ... A8ASG6 27933779
    142 5b5n:M (3.3) BS06 BCL ? GO:0005515 ... A8ASG6 27933779
    143 5b5n:M (3.3) BS07 BPH ? GO:0005515 ... A8ASG6 27933779
    144 5b5n:M (3.3) BS08 MQ8 ? GO:0005515 ... A8ASG6 27933779
    145 5b5n:M (3.3) BS09 CRT ? GO:0005515 ... A8ASG6 27933779
    146 5b5n:M (3.3) BS10 PGW ? GO:0005515 ... A8ASG6 27933779
    147 5b5n:N (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    148 5b5n:N (3.3) BS02 BCL ? GO:0005515 ... D2Z0P1 27933779
    149 5b5n:N (3.3) BS03 CRT ? GO:0005515 ... D2Z0P1 27933779
    150 5b5n:O (3.3) BS01 CRT ? GO:0005515 ... D2Z0P2 27933779
    151 5b5n:O (3.3) BS02 BCL ? GO:0005515 ... D2Z0P2 27933779
    152 5b5n:O (3.3) BS03 BCL ? GO:0005515 ... D2Z0P2 27933779
    153 5b5n:O (3.3) BS04 CRT ? GO:0005515 ... D2Z0P2 27933779
    154 5b5n:P (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    155 5b5n:P (3.3) BS02 BCL ? GO:0005515 ... D2Z0P1 27933779
    156 5b5n:P (3.3) BS03 CRT ? GO:0005515 ... D2Z0P1 27933779
    157 5b5n:Q (3.3) BS01 CRT ? GO:0005515 ... D2Z0P2 27933779
    158 5b5n:Q (3.3) BS02 BCL ? GO:0005515 ... D2Z0P2 27933779
    159 5b5n:Q (3.3) BS03 CRT ? GO:0005515 ... D2Z0P2 27933779
    160 5b5n:Q (3.3) BS04 BCL ? GO:0005515 ... D2Z0P2 27933779
    161 5b5n:Q (3.3) BS05 BCL ? GO:0005515 ... D2Z0P2 27933779
    162 5b5n:Q (3.3) BS06 CRT ? GO:0005515 ... D2Z0P2 27933779
    163 5b5n:R (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    164 5b5n:R (3.3) BS02 CRT ? GO:0005515 ... D2Z0P1 27933779
    165 5b5n:R (3.3) BS03 BCL ? GO:0005515 ... D2Z0P1 27933779
    166 5b5n:S (3.3) BS01 CRT ? GO:0005515 ... D2Z0P2 27933779
    167 5b5n:S (3.3) BS02 PGW ? GO:0005515 ... D2Z0P2 27933779
    168 5b5n:S (3.3) BS03 BCL ? GO:0005515 ... D2Z0P2 27933779
    169 5b5n:S (3.3) BS04 CRT ? GO:0005515 ... D2Z0P2 27933779
    170 5b5n:S (3.3) BS05 BCL ? GO:0005515 ... D2Z0P2 27933779
    171 5b5n:S (3.3) BS06 CRT ? GO:0005515 ... D2Z0P2 27933779
    172 5b5n:T (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    173 5b5n:T (3.3) BS02 CRT ? GO:0005515 ... D2Z0P1 27933779
    174 5b5n:T (3.3) BS03 BCL ? GO:0005515 ... D2Z0P1 27933779
    175 5b5n:U (3.3) BS01 CRT ? GO:0005515 ... D2Z0P2 27933779
    176 5b5n:U (3.3) BS02 BCL ? GO:0005515 ... D2Z0P2 27933779
    177 5b5n:U (3.3) BS03 CRT ? GO:0005515 ... D2Z0P2 27933779
    178 5b5n:U (3.3) BS04 BCL ? GO:0005515 ... D2Z0P2 27933779
    179 5b5n:U (3.3) BS05 BCL ? GO:0005515 ... D2Z0P2 27933779
    180 5b5n:U (3.3) BS06 CRT ? GO:0005515 ... D2Z0P2 27933779
    181 5b5n:V (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    182 5b5n:V (3.3) BS02 CRT ? GO:0005515 ... D2Z0P1 27933779
    183 5b5n:V (3.3) BS03 BCL ? GO:0005515 ... D2Z0P1 27933779
    184 5b5n:W (3.3) BS01 CRT ? GO:0005515 ... D2Z0P2 27933779
    185 5b5n:W (3.3) BS02 BCL ? GO:0005515 ... D2Z0P2 27933779
    186 5b5n:W (3.3) BS03 CRT ? GO:0005515 ... D2Z0P2 27933779
    187 5b5n:W (3.3) BS04 BCL ? GO:0005515 ... D2Z0P2 27933779
    188 5b5n:W (3.3) BS05 CRT ? GO:0005515 ... D2Z0P2 27933779
    189 5b5n:X (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    190 5b5n:X (3.3) BS02 CRT ? GO:0005515 ... D2Z0P1 27933779
    191 5b5n:X (3.3) BS03 BCL ? GO:0005515 ... D2Z0P1 27933779
    192 5b5n:Y (3.3) BS01 BCL ? GO:0005515 ... D2Z0P2 27933779
    193 5b5n:Y (3.3) BS02 CRT ? GO:0005515 ... D2Z0P2 27933779
    194 5b5n:Y (3.3) BS03 BCL ? GO:0005515 ... D2Z0P2 27933779
    195 5b5n:Y (3.3) BS04 CRT ? GO:0005515 ... D2Z0P2 27933779
    196 5b5n:Z (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    197 5b5n:Z (3.3) BS02 CRT ? GO:0005515 ... D2Z0P1 27933779
    198 5b5n:Z (3.3) BS03 BCL ? GO:0005515 ... D2Z0P1 27933779
    199 5b5n:c (3.3) BS01 CRT ? GO:0005515 ... D2Z0P1 27933779
    200 5b5n:c (3.3) BS02 BCL ? GO:0005515 ... D2Z0P1 27933779
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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