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BioLiP
Download all results in tab-seperated text for 35 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5aj3:B (3.6) BS01 rna ? GO:0003735 ... F1S001 25837512
    2 5aj3:C (3.6) BS01 rna ? GO:0005739 ... F1ST79 25837512
    3 5aj3:E (3.6) BS01 rna ? GO:0003723 ... F1SU66 25837512
    4 5aj3:E (3.6) BS02 rna ? GO:0003723 ... F1SU66 25837512
    5 5aj3:F (3.6) BS01 rna N/A GO:0003735 ... N/A 25837512
    6 5aj3:G (3.6) BS01 rna N/A GO:0006412 ... N/A 25837512
    7 5aj3:G (3.6) BS02 rna N/A GO:0006412 ... N/A 25837512
    8 5aj3:I (3.6) BS01 rna ? GO:0003735 ... A0A0M3KL59 25837512
    9 5aj3:I (3.6) BS02 rna ? GO:0003735 ... A0A0M3KL59 25837512
    10 5aj3:J (3.6) BS01 rna ? GO:0005763 ... F1RUU2 25837512
    11 5aj3:K (3.6) BS01 rna N/A GO:0003735 ... N/A 25837512
    12 5aj3:L (3.6) BS01 rna ? GO:0003735 ... A0A0M3KL52 25837512
    13 5aj3:N (3.6) BS01 rna ? GO:0003735 ... A0A0M3KL53 25837512
    14 5aj3:O (3.6) BS01 rna N/A GO:0003735 ... N/A 25837512
    15 5aj3:P (3.6) BS01 rna N/A GO:0003735 ... N/A 25837512
    16 5aj3:Q (3.6) BS01 rna ? GO:0003735 ... A0A8D1UDM1 25837512
    17 5aj3:R (3.6) BS01 rna ? GO:0003735 ... A0A0M3KL54 25837512
    18 5aj3:R (3.6) BS02 ZN ? GO:0003735 ... A0A0M3KL54 25837512
    19 5aj3:U (3.6) BS01 rna N/A GO:0003735 ... N/A 25837512
    20 5aj3:b (3.6) BS01 rna N/A GO:0003735 ... N/A 25837512
    21 5aj3:c (3.6) BS01 rna ? GO:0003735 ... A0A0M3KL55 25837512
    22 5aj3:c (3.6) BS02 ZN ? GO:0003735 ... A0A0M3KL55 25837512
    23 5aj3:d (3.6) BS01 rna ? GO:0005654 ... F1S8A5 25837512
    24 5aj3:e (3.6) BS01 rna N/A N/A N/A 25837512
    25 5aj3:e (3.6) BS02 peptide N/A N/A N/A 25837512
    26 5aj3:g (3.6) BS01 rna ? GO:0005761 ... F1RLM4 25837512
    27 5aj3:g (3.6) BS02 GDP ? GO:0005761 ... F1RLM4 25837512
    28 5aj3:i (3.6) BS01 rna ? N/A A0A4X1V2H3 25837512
    29 5aj3:i (3.6) BS02 peptide ? N/A A0A4X1V2H3 25837512
    30 5aj3:j (3.6) BS01 rna N/A GO:0003735 ... N/A 25837512
    31 5aj3:m (3.6) BS01 rna ? GO:0005739 ... A0A4X1SZV4 25837512
    32 5aj3:n (3.6) BS01 rna ? GO:0005739 ... A0A0M3KL57 25837512
    33 5aj3:o (3.6) BS01 peptide ? GO:0005739 ... K7GKS8 25837512
    34 5aj3:p (3.6) BS01 rna ? GO:0003735 ... Q767K8 25837512
    35 5aj3:p (3.6) BS02 ZN ? GO:0003735 ... Q767K8 25837512
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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