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BioLiP
Download all results in tab-seperated text for 38 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5ady:0 (4.5) BS01 rna ? GO:0000027 ... P0A7N4 26458047
    2 5ady:1 (4.5) BS01 rna ? GO:0000027 ... P0A7N9 26458047
    3 5ady:2 (4.5) BS01 rna ? GO:0002181 ... P0A7P5 26458047
    4 5ady:3 (4.5) BS01 rna ? GO:0002181 ... P0A7Q1 26458047
    5 5ady:4 (4.5) BS01 rna ? GO:0002181 ... P0A7Q6 26458047
    6 5ady:5 (4.5) BS01 rna ? GO:0000027 ... P0A7L0 26458047
    7 5ady:6 (4.5) BS01 rna ? GO:0003924 ... P25519 26458047
    8 5ady:6 (4.5) BS02 GNP ? GO:0003924 ... P25519 26458047
    9 5ady:6 (4.5) BS03 MG ? GO:0003924 ... P25519 26458047
    10 5ady:7 (4.5) BS01 rna ? GO:0002181 ... P0A7J3 26458047
    11 5ady:C (4.5) BS01 rna ? GO:0000027 ... P60422 26458047
    12 5ady:D (4.5) BS01 rna ? GO:0000027 ... P60438 26458047
    13 5ady:E (4.5) BS01 rna ? GO:0001070 ... P60723 26458047
    14 5ady:F (4.5) BS01 rna ? GO:0000027 ... P62399 26458047
    15 5ady:F (4.5) BS02 rna ? GO:0000027 ... P62399 26458047
    16 5ady:G (4.5) BS01 rna ? GO:0000027 ... P0AG55 26458047
    17 5ady:H (4.5) BS01 rna ? GO:0002181 ... P0A7R1 26458047
    18 5ady:I (4.5) BS01 rna ? GO:0000027 ... P0A7J7 26458047
    19 5ady:J (4.5) BS01 rna ? GO:0002181 ... P0AA10 26458047
    20 5ady:K (4.5) BS01 rna ? GO:0002181 ... P0ADY3 26458047
    21 5ady:L (4.5) BS01 rna ? GO:0002181 ... P02413 26458047
    22 5ady:M (4.5) BS01 rna ? GO:0000027 ... P0ADY7 26458047
    23 5ady:M (4.5) BS02 rna ? GO:0000027 ... P0ADY7 26458047
    24 5ady:N (4.5) BS01 rna ? GO:0000027 ... P0AG44 26458047
    25 5ady:O (4.5) BS01 rna ? GO:0002181 ... P0C018 26458047
    26 5ady:O (4.5) BS02 rna ? GO:0002181 ... P0C018 26458047
    27 5ady:P (4.5) BS01 rna ? GO:0000027 ... P0A7K6 26458047
    28 5ady:Q (4.5) BS01 rna ? GO:0000027 ... P0A7L3 26458047
    29 5ady:R (4.5) BS01 rna ? GO:0002181 ... P0AG48 26458047
    30 5ady:S (4.5) BS01 rna ? GO:0002181 ... P61175 26458047
    31 5ady:T (4.5) BS01 rna ? GO:0000027 ... P0ADZ0 26458047
    32 5ady:U (4.5) BS01 rna ? GO:0000027 ... P60624 26458047
    33 5ady:V (4.5) BS01 rna ? GO:0000027 ... P68919 26458047
    34 5ady:W (4.5) BS01 rna ? GO:0000027 ... P0A7L8 26458047
    35 5ady:X (4.5) BS01 rna ? GO:0000027 ... P0A7M2 26458047
    36 5ady:Y (4.5) BS01 rna ? GO:0000027 ... P0A7M6 26458047
    37 5ady:Z (4.5) BS01 rna ? GO:0000027 ... P0AG51 26458047
    38 5ady:Z (4.5) BS02 rna ? GO:0000027 ... P0AG51 26458047
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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