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BioLiP
Download all results in tab-seperated text for 64 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5aa0:AC (5.0) BS01 rna ? GO:0000049 ... Q5SLP7 26283392
    2 5aa0:AC (5.0) BS02 rna ? GO:0000049 ... Q5SLP7 26283392
    3 5aa0:AD (5.0) BS01 rna ? GO:0002181 ... P60405 26283392
    4 5aa0:AE (5.0) BS01 rna ? GO:0003735 ... Q5SHN8 26283392
    5 5aa0:AF (5.0) BS01 rna ? GO:0003735 ... Q5SHN9 26283392
    6 5aa0:AG (5.0) BS01 rna ? GO:0000049 ... Q5SHQ0 26283392
    7 5aa0:AG (5.0) BS02 rna ? GO:0000049 ... Q5SHQ0 26283392
    8 5aa0:AG (5.0) BS03 rna ? GO:0000049 ... Q5SHQ0 26283392
    9 5aa0:AH (5.0) BS01 rna ? GO:0002181 ... P0DOY8 26283392
    10 5aa0:AI (5.0) BS01 rna ? N/A Q8VVE3 26283392
    11 5aa0:AJ (5.0) BS01 rna ? GO:0003735 ... Q5SLP6 26283392
    12 5aa0:AK (5.0) BS01 rna ? GO:0003729 ... P60488 26283392
    13 5aa0:AL (5.0) BS01 rna ? GO:0003735 ... Q5SHP8 26283392
    14 5aa0:AL (5.0) BS02 rna ? GO:0003735 ... Q5SHP8 26283392
    15 5aa0:AM (5.0) BS01 rna ? GO:0003735 ... Q5SHQ7 26283392
    16 5aa0:AN (5.0) BS01 rna ? GO:0000049 ... P60489 26283392
    17 5aa0:AO (5.0) BS01 rna ? GO:0003735 ... Q9Z9H5 26283392
    18 5aa0:AP (5.0) BS01 rna ? GO:0003735 ... Q5SHQ4 26283392
    19 5aa0:AP (5.0) BS02 rna ? GO:0003735 ... Q5SHQ4 26283392
    20 5aa0:AQ (5.0) BS01 rna ? GO:0003735 ... P60490 26283392
    21 5aa0:AQ (5.0) BS02 rna ? GO:0003735 ... P60490 26283392
    22 5aa0:AR (5.0) BS01 rna ? GO:0000027 ... P60491 26283392
    23 5aa0:AS (5.0) BS01 rna ? GO:0003723 ... P60492 26283392
    24 5aa0:AT (5.0) BS01 rna ? GO:0003735 ... Q5SHP3 26283392
    25 5aa0:AU (5.0) BS01 rna ? GO:0000027 ... Q5SHP0 26283392
    26 5aa0:AV (5.0) BS01 rna ? GO:0003723 ... Q5SHP9 26283392
    27 5aa0:AW (5.0) BS01 rna ? GO:0003735 ... Q5SHZ1 26283392
    28 5aa0:AW (5.0) BS02 rna ? GO:0003735 ... Q5SHZ1 26283392
    29 5aa0:AW (5.0) BS03 rna ? GO:0003735 ... Q5SHZ1 26283392
    30 5aa0:AX (5.0) BS01 rna ? GO:0003735 ... P60493 26283392
    31 5aa0:AX (5.0) BS02 rna ? GO:0003735 ... P60493 26283392
    32 5aa0:AX (5.0) BS03 rna ? GO:0003735 ... P60493 26283392
    33 5aa0:AX (5.0) BS04 8AN ? GO:0003735 ... P60493 26283392
    34 5aa0:AY (5.0) BS01 rna ? GO:0003735 ... Q5SHP6 26283392
    35 5aa0:AZ (5.0) BS01 rna ? GO:0003735 ... Q5SHQ6 26283392
    36 5aa0:Aa (5.0) BS01 rna ? GO:0003735 ... Q5SJE1 26283392
    37 5aa0:Ab (5.0) BS01 rna ? GO:0003735 ... P80339 26283392
    38 5aa0:Ac (5.0) BS01 rna ? GO:0000049 ... P35871 26283392
    39 5aa0:Ad (5.0) BS01 rna ? GO:0003735 ... P80340 26283392
    40 5aa0:Ae (5.0) BS01 rna ? GO:0003735 ... Q5SKU1 26283392
    41 5aa0:Af (5.0) BS01 rna ? GO:0003735 ... Q5SHR2 26283392
    42 5aa0:BF (5.0) BS01 rna ? GO:0003735 ... P80371 26283392
    43 5aa0:BG (5.0) BS01 rna ? GO:0003676 ... P80372 26283392
    44 5aa0:BH (5.0) BS01 rna ? GO:0003723 ... P80373 26283392
    45 5aa0:BI (5.0) BS01 rna ? GO:0003723 ... Q5SHQ5 26283392
    46 5aa0:BJ (5.0) BS01 rna ? GO:0003735 ... Q5SLP8 26283392
    47 5aa0:BK (5.0) BS01 rna ? GO:0000028 ... P17291 26283392
    48 5aa0:BL (5.0) BS01 rna ? GO:0003735 ... P0DOY9 26283392
    49 5aa0:BM (5.0) BS01 rna ? GO:0000049 ... P80374 26283392
    50 5aa0:BM (5.0) BS02 rna ? GO:0000049 ... P80374 26283392
    51 5aa0:BN (5.0) BS01 rna ? GO:0000049 ... Q5SHN7 26283392
    52 5aa0:BO (5.0) BS01 rna ? GO:0003735 ... P80376 26283392
    53 5aa0:BP (5.0) BS01 rna ? GO:0000049 ... Q5SHN3 26283392
    54 5aa0:BQ (5.0) BS01 rna ? GO:0000049 ... P80377 26283392
    55 5aa0:BR (5.0) BS01 rna ? GO:0003735 ... P0DOY6 26283392
    56 5aa0:BS (5.0) BS01 rna ? GO:0003735 ... Q5SJ76 26283392
    57 5aa0:BS (5.0) BS02 rna ? GO:0003735 ... Q5SJ76 26283392
    58 5aa0:BT (5.0) BS01 rna ? GO:0003735 ... Q5SJH3 26283392
    59 5aa0:BU (5.0) BS01 rna ? GO:0003735 ... P0DOY7 26283392
    60 5aa0:BV (5.0) BS01 rna ? GO:0003735 ... Q5SLQ0 26283392
    61 5aa0:BW (5.0) BS01 rna ? GO:0003723 ... Q5SHP2 26283392
    62 5aa0:BX (5.0) BS01 rna ? GO:0003723 ... P80380 26283392
    63 5aa0:BZ (5.0) BS01 rna 3.6.5.- GO:0003924 ... P0A3B2 26283392
    64 5aa0:BZ (5.0) BS02 rna 3.6.5.- GO:0003924 ... P0A3B2 26283392
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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