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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 203 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4zer:10 (3.1) BS01 rna ? GO:0003735 ... P60493 25984971
    2 4zer:10 (3.1) BS02 rna ? GO:0003735 ... P60493 25984971
    3 4zer:10 (3.1) BS03 rna ? GO:0003735 ... P60493 25984971
    4 4zer:10 (3.1) BS04 MG ? GO:0003735 ... P60493 25984971
    5 4zer:10 (3.1) BS05 MG ? GO:0003735 ... P60493 25984971
    6 4zer:11 (3.1) BS01 rna ? GO:0003735 ... P60494 25984971
    7 4zer:12 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 25984971
    8 4zer:13 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 25984971
    9 4zer:13 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 25984971
    10 4zer:13 (3.1) BS03 MG ? GO:0003735 ... Q5SHQ6 25984971
    11 4zer:13 (3.1) BS04 MG ? GO:0003735 ... Q5SHQ6 25984971
    12 4zer:14 (3.1) BS01 rna ? GO:0003735 ... Q5SJE1 25984971
    13 4zer:14 (3.1) BS02 ZN ? GO:0003735 ... Q5SJE1 25984971
    14 4zer:15 (3.1) BS01 rna ? GO:0003735 ... P80339 25984971
    15 4zer:15 (3.1) BS02 MG ? GO:0003735 ... P80339 25984971
    16 4zer:15 (3.1) BS03 MG ? GO:0003735 ... P80339 25984971
    17 4zer:15 (3.1) BS04 MG ? GO:0003735 ... P80339 25984971
    18 4zer:15 (3.1) BS05 MG ? GO:0003735 ... P80339 25984971
    19 4zer:15 (3.1) BS06 ZN ? GO:0003735 ... P80339 25984971
    20 4zer:16 (3.1) BS01 rna ? GO:0000049 ... P35871 25984971
    21 4zer:16 (3.1) BS02 ZN ? GO:0000049 ... P35871 25984971
    22 4zer:17 (3.1) BS01 rna ? GO:0003735 ... P80340 25984971
    23 4zer:17 (3.1) BS02 MG ? GO:0003735 ... P80340 25984971
    24 4zer:17 (3.1) BS03 MG ? GO:0003735 ... P80340 25984971
    25 4zer:18 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 25984971
    26 4zer:18 (3.1) BS02 MG ? GO:0003735 ... Q5SKU1 25984971
    27 4zer:19 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 25984971
    28 4zer:19 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 25984971
    29 4zer:1D (3.1) BS01 rna ? GO:0002181 ... P60405 25984971
    30 4zer:1D (3.1) BS02 MG ? GO:0002181 ... P60405 25984971
    31 4zer:1D (3.1) BS03 MG ? GO:0002181 ... P60405 25984971
    32 4zer:1D (3.1) BS04 MG ? GO:0002181 ... P60405 25984971
    33 4zer:1D (3.1) BS05 MG ? GO:0002181 ... P60405 25984971
    34 4zer:1D (3.1) BS06 MG ? GO:0002181 ... P60405 25984971
    35 4zer:1D (3.1) BS07 MG ? GO:0002181 ... P60405 25984971
    36 4zer:1D (3.1) BS08 MG ? GO:0002181 ... P60405 25984971
    37 4zer:1D (3.1) BS09 MG ? GO:0002181 ... P60405 25984971
    38 4zer:1D (3.1) BS10 MG ? GO:0002181 ... P60405 25984971
    39 4zer:1E (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 25984971
    40 4zer:1E (3.1) BS02 MG ? GO:0003735 ... Q5SHN8 25984971
    41 4zer:1E (3.1) BS03 MG ? GO:0003735 ... Q5SHN8 25984971
    42 4zer:1F (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 25984971
    43 4zer:1F (3.1) BS02 MG ? GO:0003735 ... Q5SHN9 25984971
    44 4zer:1F (3.1) BS03 MG ? GO:0003735 ... Q5SHN9 25984971
    45 4zer:1F (3.1) BS04 MG ? GO:0003735 ... Q5SHN9 25984971
    46 4zer:1F (3.1) BS05 MG ? GO:0003735 ... Q5SHN9 25984971
    47 4zer:1F (3.1) BS06 MG ? GO:0003735 ... Q5SHN9 25984971
    48 4zer:1F (3.1) BS07 MG ? GO:0003735 ... Q5SHN9 25984971
    49 4zer:1F (3.1) BS08 MG ? GO:0003735 ... Q5SHN9 25984971
    50 4zer:1F (3.1) BS09 MG ? GO:0003735 ... Q5SHN9 25984971
    51 4zer:1F (3.1) BS10 MG ? GO:0003735 ... Q5SHN9 25984971
    52 4zer:1F (3.1) BS11 MG ? GO:0003735 ... Q5SHN9 25984971
    53 4zer:1G (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 25984971
    54 4zer:1G (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 25984971
    55 4zer:1G (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 25984971
    56 4zer:1G (3.1) BS04 MG ? GO:0000049 ... Q5SHQ0 25984971
    57 4zer:1G (3.1) BS05 MG ? GO:0000049 ... Q5SHQ0 25984971
    58 4zer:1H (3.1) BS01 rna ? GO:0002181 ... P0DOY8 25984971
    59 4zer:1I (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 25984971
    60 4zer:1N (3.1) BS01 rna ? GO:0003729 ... P60488 25984971
    61 4zer:1N (3.1) BS02 MG ? GO:0003729 ... P60488 25984971
    62 4zer:1O (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 25984971
    63 4zer:1O (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 25984971
    64 4zer:1P (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 25984971
    65 4zer:1P (3.1) BS02 MG ? GO:0003735 ... Q5SHQ7 25984971
    66 4zer:1Q (3.1) BS01 rna ? GO:0000049 ... P60489 25984971
    67 4zer:1Q (3.1) BS02 rna ? GO:0000049 ... P60489 25984971
    68 4zer:1Q (3.1) BS03 MG ? GO:0000049 ... P60489 25984971
    69 4zer:1Q (3.1) BS04 MG ? GO:0000049 ... P60489 25984971
    70 4zer:1Q (3.1) BS05 MG ? GO:0000049 ... P60489 25984971
    71 4zer:1R (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 25984971
    72 4zer:1R (3.1) BS02 MG ? GO:0003735 ... Q9Z9H5 25984971
    73 4zer:1S (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 25984971
    74 4zer:1S (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 25984971
    75 4zer:1T (3.1) BS01 rna ? GO:0003735 ... P60490 25984971
    76 4zer:1T (3.1) BS02 rna ? GO:0003735 ... P60490 25984971
    77 4zer:1U (3.1) BS01 rna ? GO:0000027 ... P60491 25984971
    78 4zer:1U (3.1) BS02 MG ? GO:0000027 ... P60491 25984971
    79 4zer:1U (3.1) BS03 MG ? GO:0000027 ... P60491 25984971
    80 4zer:1U (3.1) BS04 MG ? GO:0000027 ... P60491 25984971
    81 4zer:1U (3.1) BS05 MG ? GO:0000027 ... P60491 25984971
    82 4zer:1V (3.1) BS01 rna ? GO:0003723 ... P60492 25984971
    83 4zer:1V (3.1) BS02 MG ? GO:0003723 ... P60492 25984971
    84 4zer:1V (3.1) BS03 MG ? GO:0003723 ... P60492 25984971
    85 4zer:1V (3.1) BS04 MG ? GO:0003723 ... P60492 25984971
    86 4zer:1W (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 25984971
    87 4zer:1W (3.1) BS02 MG ? GO:0003735 ... Q5SHP3 25984971
    88 4zer:1X (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 25984971
    89 4zer:1Y (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 25984971
    90 4zer:1Y (3.1) BS02 ZN ? GO:0003723 ... Q5SHP9 25984971
    91 4zer:1Z (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 25984971
    92 4zer:1Z (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 25984971
    93 4zer:1Z (3.1) BS03 rna ? GO:0003723 ... Q5SHZ1 25984971
    94 4zer:1b (3.1) BS01 rna ? GO:0003735 ... P80371 25984971
    95 4zer:1b (3.1) BS02 MG ? GO:0003735 ... P80371 25984971
    96 4zer:1c (3.1) BS01 rna ? GO:0003676 ... P80372 25984971
    97 4zer:1d (3.1) BS01 rna ? GO:0003723 ... P80373 25984971
    98 4zer:1d (3.1) BS02 SF4 ? GO:0003723 ... P80373 25984971
    99 4zer:1e (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 25984971
    100 4zer:1e (3.1) BS02 MG ? GO:0003723 ... Q5SHQ5 25984971
    101 4zer:1f (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 25984971
    102 4zer:1g (3.1) BS01 rna ? GO:0000028 ... P17291 25984971
    103 4zer:1h (3.1) BS01 rna ? GO:0003735 ... P0DOY9 25984971
    104 4zer:1i (3.1) BS01 rna ? GO:0000049 ... P80374 25984971
    105 4zer:1i (3.1) BS02 rna ? GO:0000049 ... P80374 25984971
    106 4zer:1j (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 25984971
    107 4zer:1k (3.1) BS01 rna ? GO:0003735 ... P80376 25984971
    108 4zer:1l (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 25984971
    109 4zer:1l (3.1) BS02 MG ? GO:0000049 ... Q5SHN3 25984971
    110 4zer:1m (3.1) BS01 rna ? GO:0000049 ... P80377 25984971
    111 4zer:1m (3.1) BS02 MG ? GO:0000049 ... P80377 25984971
    112 4zer:1n (3.1) BS01 rna ? GO:0003735 ... P0DOY6 25984971
    113 4zer:1n (3.1) BS02 ZN ? GO:0003735 ... P0DOY6 25984971
    114 4zer:1o (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 25984971
    115 4zer:1o (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 25984971
    116 4zer:1p (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 25984971
    117 4zer:1q (3.1) BS01 rna N/A GO:0003735 ... N/A 25984971
    118 4zer:1r (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 25984971
    119 4zer:1s (3.1) BS01 rna ? GO:0003723 ... Q5SHP2 25984971
    120 4zer:1t (3.1) BS01 rna ? GO:0003723 ... P80380 25984971
    121 4zer:20 (3.1) BS01 rna ? GO:0003735 ... P60493 25984971
    122 4zer:20 (3.1) BS02 rna ? GO:0003735 ... P60493 25984971
    123 4zer:20 (3.1) BS03 rna ? GO:0003735 ... P60493 25984971
    124 4zer:21 (3.1) BS01 rna ? GO:0003735 ... P60494 25984971
    125 4zer:22 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 25984971
    126 4zer:23 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 25984971
    127 4zer:23 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 25984971
    128 4zer:23 (3.1) BS03 MG ? GO:0003735 ... Q5SHQ6 25984971
    129 4zer:24 (3.1) BS01 rna ? GO:0003735 ... Q5SJE1 25984971
    130 4zer:24 (3.1) BS02 ZN ? GO:0003735 ... Q5SJE1 25984971
    131 4zer:25 (3.1) BS01 rna ? GO:0003735 ... P80339 25984971
    132 4zer:25 (3.1) BS02 MG ? GO:0003735 ... P80339 25984971
    133 4zer:25 (3.1) BS03 ZN ? GO:0003735 ... P80339 25984971
    134 4zer:26 (3.1) BS01 rna ? GO:0000049 ... P35871 25984971
    135 4zer:26 (3.1) BS02 ZN ? GO:0000049 ... P35871 25984971
    136 4zer:27 (3.1) BS01 rna ? GO:0003735 ... P80340 25984971
    137 4zer:28 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 25984971
    138 4zer:29 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 25984971
    139 4zer:29 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 25984971
    140 4zer:2D (3.1) BS01 rna ? GO:0002181 ... P60405 25984971
    141 4zer:2D (3.1) BS02 rna ? GO:0002181 ... P60405 25984971
    142 4zer:2D (3.1) BS03 MG ? GO:0002181 ... P60405 25984971
    143 4zer:2D (3.1) BS04 MG ? GO:0002181 ... P60405 25984971
    144 4zer:2D (3.1) BS05 MG ? GO:0002181 ... P60405 25984971
    145 4zer:2D (3.1) BS06 MG ? GO:0002181 ... P60405 25984971
    146 4zer:2D (3.1) BS07 MG ? GO:0002181 ... P60405 25984971
    147 4zer:2E (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 25984971
    148 4zer:2E (3.1) BS02 MG ? GO:0003735 ... Q5SHN8 25984971
    149 4zer:2F (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 25984971
    150 4zer:2F (3.1) BS02 MG ? GO:0003735 ... Q5SHN9 25984971
    151 4zer:2G (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 25984971
    152 4zer:2G (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 25984971
    153 4zer:2G (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 25984971
    154 4zer:2G (3.1) BS04 MG ? GO:0000049 ... Q5SHQ0 25984971
    155 4zer:2H (3.1) BS01 rna ? GO:0002181 ... P0DOY8 25984971
    156 4zer:2I (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 25984971
    157 4zer:2N (3.1) BS01 rna ? GO:0003729 ... P60488 25984971
    158 4zer:2O (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 25984971
    159 4zer:2O (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 25984971
    160 4zer:2P (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 25984971
    161 4zer:2Q (3.1) BS01 rna ? GO:0000049 ... P60489 25984971
    162 4zer:2Q (3.1) BS02 rna ? GO:0000049 ... P60489 25984971
    163 4zer:2R (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 25984971
    164 4zer:2S (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 25984971
    165 4zer:2S (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 25984971
    166 4zer:2T (3.1) BS01 rna ? GO:0003735 ... P60490 25984971
    167 4zer:2T (3.1) BS02 rna ? GO:0003735 ... P60490 25984971
    168 4zer:2U (3.1) BS01 rna ? GO:0000027 ... P60491 25984971
    169 4zer:2V (3.1) BS01 rna ? GO:0003723 ... P60492 25984971
    170 4zer:2V (3.1) BS02 MG ? GO:0003723 ... P60492 25984971
    171 4zer:2V (3.1) BS03 MG ? GO:0003723 ... P60492 25984971
    172 4zer:2W (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 25984971
    173 4zer:2X (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 25984971
    174 4zer:2Y (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 25984971
    175 4zer:2Y (3.1) BS02 ZN ? GO:0003723 ... Q5SHP9 25984971
    176 4zer:2Z (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 25984971
    177 4zer:2Z (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 25984971
    178 4zer:2Z (3.1) BS03 rna ? GO:0003723 ... Q5SHZ1 25984971
    179 4zer:2b (3.1) BS01 rna ? GO:0003735 ... P80371 25984971
    180 4zer:2c (3.1) BS01 rna ? GO:0003676 ... P80372 25984971
    181 4zer:2d (3.1) BS01 rna ? GO:0003723 ... P80373 25984971
    182 4zer:2d (3.1) BS02 SF4 ? GO:0003723 ... P80373 25984971
    183 4zer:2e (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 25984971
    184 4zer:2f (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 25984971
    185 4zer:2f (3.1) BS02 MG ? GO:0003735 ... Q5SLP8 25984971
    186 4zer:2g (3.1) BS01 rna ? GO:0000028 ... P17291 25984971
    187 4zer:2h (3.1) BS01 rna ? GO:0003735 ... P0DOY9 25984971
    188 4zer:2i (3.1) BS01 rna ? GO:0000049 ... P80374 25984971
    189 4zer:2j (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 25984971
    190 4zer:2j (3.1) BS02 MG ? GO:0000049 ... Q5SHN7 25984971
    191 4zer:2k (3.1) BS01 rna ? GO:0003735 ... P80376 25984971
    192 4zer:2k (3.1) BS02 MG ? GO:0003735 ... P80376 25984971
    193 4zer:2l (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 25984971
    194 4zer:2m (3.1) BS01 rna ? GO:0000049 ... P80377 25984971
    195 4zer:2n (3.1) BS01 rna ? GO:0003735 ... P0DOY6 25984971
    196 4zer:2n (3.1) BS02 ZN ? GO:0003735 ... P0DOY6 25984971
    197 4zer:2o (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 25984971
    198 4zer:2o (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 25984971
    199 4zer:2p (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 25984971
    200 4zer:2q (3.1) BS01 rna N/A GO:0003735 ... N/A 25984971
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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