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BioLiP
Download all results in tab-seperated text for 247 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4z3s:10 (2.65) BS01 rna ? GO:0003735 ... P60493 26028538
    2 4z3s:10 (2.65) BS02 rna ? GO:0003735 ... P60493 26028538
    3 4z3s:10 (2.65) BS03 rna ? GO:0003735 ... P60493 26028538
    4 4z3s:10 (2.65) BS04 MG ? GO:0003735 ... P60493 26028538
    5 4z3s:11 (2.65) BS01 rna ? GO:0003735 ... P60494 26028538
    6 4z3s:11 (2.65) BS02 MG ? GO:0003735 ... P60494 26028538
    7 4z3s:12 (2.65) BS01 rna ? GO:0003735 ... Q5SHP6 26028538
    8 4z3s:12 (2.65) BS02 MG ? GO:0003735 ... Q5SHP6 26028538
    9 4z3s:13 (2.65) BS01 rna ? GO:0003735 ... Q5SHQ6 26028538
    10 4z3s:13 (2.65) BS02 rna ? GO:0003735 ... Q5SHQ6 26028538
    11 4z3s:13 (2.65) BS03 MG ? GO:0003735 ... Q5SHQ6 26028538
    12 4z3s:14 (2.65) BS01 rna ? GO:0003735 ... Q5SJE1 26028538
    13 4z3s:14 (2.65) BS02 ZN ? GO:0003735 ... Q5SJE1 26028538
    14 4z3s:15 (2.65) BS01 rna ? GO:0003735 ... P80339 26028538
    15 4z3s:15 (2.65) BS02 MG ? GO:0003735 ... P80339 26028538
    16 4z3s:15 (2.65) BS03 MG ? GO:0003735 ... P80339 26028538
    17 4z3s:15 (2.65) BS04 MG ? GO:0003735 ... P80339 26028538
    18 4z3s:15 (2.65) BS05 ZN ? GO:0003735 ... P80339 26028538
    19 4z3s:16 (2.65) BS01 rna ? GO:0000049 ... P35871 26028538
    20 4z3s:16 (2.65) BS02 MG ? GO:0000049 ... P35871 26028538
    21 4z3s:16 (2.65) BS03 ZN ? GO:0000049 ... P35871 26028538
    22 4z3s:16 (2.65) BS04 MG ? GO:0000049 ... P35871 26028538
    23 4z3s:17 (2.65) BS01 rna ? GO:0003735 ... P80340 26028538
    24 4z3s:17 (2.65) BS02 MG ? GO:0003735 ... P80340 26028538
    25 4z3s:18 (2.65) BS01 rna ? GO:0003735 ... Q5SKU1 26028538
    26 4z3s:18 (2.65) BS02 MG ? GO:0003735 ... Q5SKU1 26028538
    27 4z3s:18 (2.65) BS03 MG ? GO:0003735 ... Q5SKU1 26028538
    28 4z3s:19 (2.65) BS01 rna ? GO:0003735 ... Q5SHR2 26028538
    29 4z3s:19 (2.65) BS02 ZN ? GO:0003735 ... Q5SHR2 26028538
    30 4z3s:1D (2.65) BS01 rna ? GO:0002181 ... P60405 26028538
    31 4z3s:1D (2.65) BS02 rna ? GO:0002181 ... P60405 26028538
    32 4z3s:1D (2.65) BS03 MG ? GO:0002181 ... P60405 26028538
    33 4z3s:1D (2.65) BS04 MG ? GO:0002181 ... P60405 26028538
    34 4z3s:1D (2.65) BS05 MG ? GO:0002181 ... P60405 26028538
    35 4z3s:1D (2.65) BS06 MG ? GO:0002181 ... P60405 26028538
    36 4z3s:1D (2.65) BS07 MG ? GO:0002181 ... P60405 26028538
    37 4z3s:1D (2.65) BS08 MG ? GO:0002181 ... P60405 26028538
    38 4z3s:1D (2.65) BS09 MG ? GO:0002181 ... P60405 26028538
    39 4z3s:1D (2.65) BS10 MG ? GO:0002181 ... P60405 26028538
    40 4z3s:1D (2.65) BS11 MG ? GO:0002181 ... P60405 26028538
    41 4z3s:1D (2.65) BS12 MG ? GO:0002181 ... P60405 26028538
    42 4z3s:1E (2.65) BS01 rna ? GO:0003735 ... Q5SHN8 26028538
    43 4z3s:1E (2.65) BS02 MG ? GO:0003735 ... Q5SHN8 26028538
    44 4z3s:1E (2.65) BS03 MG ? GO:0003735 ... Q5SHN8 26028538
    45 4z3s:1E (2.65) BS04 MG ? GO:0003735 ... Q5SHN8 26028538
    46 4z3s:1F (2.65) BS01 rna ? GO:0003735 ... Q5SHN9 26028538
    47 4z3s:1F (2.65) BS02 MG ? GO:0003735 ... Q5SHN9 26028538
    48 4z3s:1F (2.65) BS03 MG ? GO:0003735 ... Q5SHN9 26028538
    49 4z3s:1F (2.65) BS04 MG ? GO:0003735 ... Q5SHN9 26028538
    50 4z3s:1F (2.65) BS05 MG ? GO:0003735 ... Q5SHN9 26028538
    51 4z3s:1F (2.65) BS06 MG ? GO:0003735 ... Q5SHN9 26028538
    52 4z3s:1F (2.65) BS07 MG ? GO:0003735 ... Q5SHN9 26028538
    53 4z3s:1F (2.65) BS08 MG ? GO:0003735 ... Q5SHN9 26028538
    54 4z3s:1F (2.65) BS09 MG ? GO:0003735 ... Q5SHN9 26028538
    55 4z3s:1G (2.65) BS01 rna ? GO:0000049 ... Q5SHQ0 26028538
    56 4z3s:1G (2.65) BS02 rna ? GO:0000049 ... Q5SHQ0 26028538
    57 4z3s:1G (2.65) BS03 rna ? GO:0000049 ... Q5SHQ0 26028538
    58 4z3s:1G (2.65) BS04 MG ? GO:0000049 ... Q5SHQ0 26028538
    59 4z3s:1G (2.65) BS05 MG ? GO:0000049 ... Q5SHQ0 26028538
    60 4z3s:1H (2.65) BS01 rna N/A GO:0003735 ... N/A 26028538
    61 4z3s:1I (2.65) BS01 rna ? GO:0003735 ... Q5SLQ1 26028538
    62 4z3s:1I (2.65) BS02 MG ? GO:0003735 ... Q5SLQ1 26028538
    63 4z3s:1N (2.65) BS01 rna ? GO:0003729 ... P60488 26028538
    64 4z3s:1N (2.65) BS02 MG ? GO:0003729 ... P60488 26028538
    65 4z3s:1N (2.65) BS03 MG ? GO:0003729 ... P60488 26028538
    66 4z3s:1N (2.65) BS04 MG ? GO:0003729 ... P60488 26028538
    67 4z3s:1O (2.65) BS01 rna ? GO:0003735 ... Q5SHP8 26028538
    68 4z3s:1O (2.65) BS02 rna ? GO:0003735 ... Q5SHP8 26028538
    69 4z3s:1P (2.65) BS01 rna ? GO:0003735 ... Q5SHQ7 26028538
    70 4z3s:1P (2.65) BS02 MG ? GO:0003735 ... Q5SHQ7 26028538
    71 4z3s:1P (2.65) BS03 MG ? GO:0003735 ... Q5SHQ7 26028538
    72 4z3s:1P (2.65) BS04 MG ? GO:0003735 ... Q5SHQ7 26028538
    73 4z3s:1P (2.65) BS05 MG ? GO:0003735 ... Q5SHQ7 26028538
    74 4z3s:1P (2.65) BS06 MG ? GO:0003735 ... Q5SHQ7 26028538
    75 4z3s:1Q (2.65) BS01 rna ? GO:0000049 ... P60489 26028538
    76 4z3s:1Q (2.65) BS02 rna ? GO:0000049 ... P60489 26028538
    77 4z3s:1Q (2.65) BS03 rna ? GO:0000049 ... P60489 26028538
    78 4z3s:1Q (2.65) BS04 MG ? GO:0000049 ... P60489 26028538
    79 4z3s:1Q (2.65) BS05 MG ? GO:0000049 ... P60489 26028538
    80 4z3s:1Q (2.65) BS06 MG ? GO:0000049 ... P60489 26028538
    81 4z3s:1Q (2.65) BS07 MG ? GO:0000049 ... P60489 26028538
    82 4z3s:1R (2.65) BS01 rna ? GO:0003735 ... Q9Z9H5 26028538
    83 4z3s:1R (2.65) BS02 MG ? GO:0003735 ... Q9Z9H5 26028538
    84 4z3s:1S (2.65) BS01 rna ? GO:0003735 ... Q5SHQ4 26028538
    85 4z3s:1S (2.65) BS02 rna ? GO:0003735 ... Q5SHQ4 26028538
    86 4z3s:1T (2.65) BS01 rna ? GO:0003735 ... P60490 26028538
    87 4z3s:1T (2.65) BS02 rna ? GO:0003735 ... P60490 26028538
    88 4z3s:1U (2.65) BS01 rna ? GO:0000027 ... P60491 26028538
    89 4z3s:1U (2.65) BS02 MG ? GO:0000027 ... P60491 26028538
    90 4z3s:1U (2.65) BS03 MG ? GO:0000027 ... P60491 26028538
    91 4z3s:1U (2.65) BS04 MG ? GO:0000027 ... P60491 26028538
    92 4z3s:1U (2.65) BS05 MG ? GO:0000027 ... P60491 26028538
    93 4z3s:1U (2.65) BS06 MG ? GO:0000027 ... P60491 26028538
    94 4z3s:1V (2.65) BS01 rna ? GO:0003723 ... P60492 26028538
    95 4z3s:1V (2.65) BS02 MG ? GO:0003723 ... P60492 26028538
    96 4z3s:1V (2.65) BS03 MG ? GO:0003723 ... P60492 26028538
    97 4z3s:1V (2.65) BS04 MG ? GO:0003723 ... P60492 26028538
    98 4z3s:1W (2.65) BS01 rna ? GO:0003735 ... Q5SHP3 26028538
    99 4z3s:1W (2.65) BS02 MG ? GO:0003735 ... Q5SHP3 26028538
    100 4z3s:1W (2.65) BS03 MG ? GO:0003735 ... Q5SHP3 26028538
    101 4z3s:1W (2.65) BS04 MG ? GO:0003735 ... Q5SHP3 26028538
    102 4z3s:1W (2.65) BS05 MG ? GO:0003735 ... Q5SHP3 26028538
    103 4z3s:1X (2.65) BS01 rna ? GO:0000027 ... Q5SHP0 26028538
    104 4z3s:1X (2.65) BS02 MG ? GO:0000027 ... Q5SHP0 26028538
    105 4z3s:1X (2.65) BS03 MG ? GO:0000027 ... Q5SHP0 26028538
    106 4z3s:1X (2.65) BS04 MG ? GO:0000027 ... Q5SHP0 26028538
    107 4z3s:1Y (2.65) BS01 rna ? GO:0003723 ... Q5SHP9 26028538
    108 4z3s:1Y (2.65) BS02 ZN ? GO:0003723 ... Q5SHP9 26028538
    109 4z3s:1Z (2.65) BS01 rna ? GO:0003723 ... Q5SHZ1 26028538
    110 4z3s:1Z (2.65) BS02 rna ? GO:0003723 ... Q5SHZ1 26028538
    111 4z3s:1Z (2.65) BS03 MG ? GO:0003723 ... Q5SHZ1 26028538
    112 4z3s:1b (2.65) BS01 rna ? GO:0003735 ... P80371 26028538
    113 4z3s:1b (2.65) BS02 MG ? GO:0003735 ... P80371 26028538
    114 4z3s:1b (2.65) BS03 MG ? GO:0003735 ... P80371 26028538
    115 4z3s:1c (2.65) BS01 rna ? GO:0003676 ... P80372 26028538
    116 4z3s:1d (2.65) BS01 rna ? GO:0003723 ... P80373 26028538
    117 4z3s:1d (2.65) BS02 SF4 ? GO:0003723 ... P80373 26028538
    118 4z3s:1e (2.65) BS01 rna ? GO:0003723 ... Q5SHQ5 26028538
    119 4z3s:1e (2.65) BS02 MG ? GO:0003723 ... Q5SHQ5 26028538
    120 4z3s:1f (2.65) BS01 rna ? GO:0003735 ... Q5SLP8 26028538
    121 4z3s:1f (2.65) BS02 MG ? GO:0003735 ... Q5SLP8 26028538
    122 4z3s:1g (2.65) BS01 rna ? GO:0000028 ... P17291 26028538
    123 4z3s:1g (2.65) BS02 rna ? GO:0000028 ... P17291 26028538
    124 4z3s:1h (2.65) BS01 rna N/A GO:0003735 ... N/A 26028538
    125 4z3s:1i (2.65) BS01 rna ? GO:0000049 ... P80374 26028538
    126 4z3s:1i (2.65) BS02 rna ? GO:0000049 ... P80374 26028538
    127 4z3s:1j (2.65) BS01 rna ? GO:0000049 ... Q5SHN7 26028538
    128 4z3s:1k (2.65) BS01 rna ? GO:0003735 ... P80376 26028538
    129 4z3s:1k (2.65) BS02 MG ? GO:0003735 ... P80376 26028538
    130 4z3s:1l (2.65) BS01 rna ? GO:0000049 ... Q5SHN3 26028538
    131 4z3s:1l (2.65) BS02 MG ? GO:0000049 ... Q5SHN3 26028538
    132 4z3s:1m (2.65) BS01 rna ? GO:0000049 ... P80377 26028538
    133 4z3s:1m (2.65) BS02 rna ? GO:0000049 ... P80377 26028538
    134 4z3s:1m (2.65) BS03 rna ? GO:0000049 ... P80377 26028538
    135 4z3s:1m (2.65) BS04 rna ? GO:0000049 ... P80377 26028538
    136 4z3s:1m (2.65) BS05 MG ? GO:0000049 ... P80377 26028538
    137 4z3s:1n (2.65) BS01 rna N/A GO:0003735 ... N/A 26028538
    138 4z3s:1n (2.65) BS02 ZN N/A GO:0003735 ... N/A 26028538
    139 4z3s:1n (2.65) BS03 MG N/A GO:0003735 ... N/A 26028538
    140 4z3s:1o (2.65) BS01 rna ? GO:0003735 ... Q5SJ76 26028538
    141 4z3s:1o (2.65) BS02 rna ? GO:0003735 ... Q5SJ76 26028538
    142 4z3s:1p (2.65) BS01 rna ? GO:0003735 ... Q5SJH3 26028538
    143 4z3s:1q (2.65) BS01 rna N/A GO:0003735 ... N/A 26028538
    144 4z3s:1r (2.65) BS01 rna ? GO:0003735 ... Q5SLQ0 26028538
    145 4z3s:1s (2.65) BS01 rna ? GO:0000028 ... Q5SHP2 26028538
    146 4z3s:1t (2.65) BS01 rna ? GO:0003723 ... P80380 26028538
    147 4z3s:1t (2.65) BS02 MG ? GO:0003723 ... P80380 26028538
    148 4z3s:20 (2.65) BS01 rna ? GO:0003735 ... P60493 26028538
    149 4z3s:20 (2.65) BS02 rna ? GO:0003735 ... P60493 26028538
    150 4z3s:21 (2.65) BS01 rna ? GO:0003735 ... P60494 26028538
    151 4z3s:21 (2.65) BS02 MG ? GO:0003735 ... P60494 26028538
    152 4z3s:22 (2.65) BS01 rna ? GO:0003735 ... Q5SHP6 26028538
    153 4z3s:23 (2.65) BS01 rna ? GO:0003735 ... Q5SHQ6 26028538
    154 4z3s:23 (2.65) BS02 rna ? GO:0003735 ... Q5SHQ6 26028538
    155 4z3s:23 (2.65) BS03 MG ? GO:0003735 ... Q5SHQ6 26028538
    156 4z3s:24 (2.65) BS01 rna ? GO:0003735 ... Q5SJE1 26028538
    157 4z3s:24 (2.65) BS02 ZN ? GO:0003735 ... Q5SJE1 26028538
    158 4z3s:25 (2.65) BS01 rna ? GO:0003735 ... P80339 26028538
    159 4z3s:25 (2.65) BS02 MG ? GO:0003735 ... P80339 26028538
    160 4z3s:25 (2.65) BS03 ZN ? GO:0003735 ... P80339 26028538
    161 4z3s:26 (2.65) BS01 rna ? GO:0000049 ... P35871 26028538
    162 4z3s:26 (2.65) BS02 ZN ? GO:0000049 ... P35871 26028538
    163 4z3s:27 (2.65) BS01 rna ? GO:0003735 ... P80340 26028538
    164 4z3s:28 (2.65) BS01 rna ? GO:0003735 ... Q5SKU1 26028538
    165 4z3s:29 (2.65) BS01 rna ? GO:0003735 ... Q5SHR2 26028538
    166 4z3s:29 (2.65) BS02 ZN ? GO:0003735 ... Q5SHR2 26028538
    167 4z3s:2D (2.65) BS01 rna ? GO:0002181 ... P60405 26028538
    168 4z3s:2D (2.65) BS02 rna ? GO:0002181 ... P60405 26028538
    169 4z3s:2D (2.65) BS03 MG ? GO:0002181 ... P60405 26028538
    170 4z3s:2D (2.65) BS04 MG ? GO:0002181 ... P60405 26028538
    171 4z3s:2D (2.65) BS05 MG ? GO:0002181 ... P60405 26028538
    172 4z3s:2D (2.65) BS06 MG ? GO:0002181 ... P60405 26028538
    173 4z3s:2D (2.65) BS07 MG ? GO:0002181 ... P60405 26028538
    174 4z3s:2E (2.65) BS01 rna ? GO:0003735 ... Q5SHN8 26028538
    175 4z3s:2E (2.65) BS02 MG ? GO:0003735 ... Q5SHN8 26028538
    176 4z3s:2F (2.65) BS01 rna ? GO:0003735 ... Q5SHN9 26028538
    177 4z3s:2F (2.65) BS02 MG ? GO:0003735 ... Q5SHN9 26028538
    178 4z3s:2F (2.65) BS03 MG ? GO:0003735 ... Q5SHN9 26028538
    179 4z3s:2G (2.65) BS01 rna ? GO:0000049 ... Q5SHQ0 26028538
    180 4z3s:2G (2.65) BS02 rna ? GO:0000049 ... Q5SHQ0 26028538
    181 4z3s:2G (2.65) BS03 rna ? GO:0000049 ... Q5SHQ0 26028538
    182 4z3s:2H (2.65) BS01 rna N/A GO:0003735 ... N/A 26028538
    183 4z3s:2I (2.65) BS01 rna ? GO:0003735 ... Q5SLQ1 26028538
    184 4z3s:2N (2.65) BS01 rna ? GO:0003729 ... P60488 26028538
    185 4z3s:2O (2.65) BS01 rna ? GO:0003735 ... Q5SHP8 26028538
    186 4z3s:2O (2.65) BS02 rna ? GO:0003735 ... Q5SHP8 26028538
    187 4z3s:2P (2.65) BS01 rna ? GO:0003735 ... Q5SHQ7 26028538
    188 4z3s:2P (2.65) BS02 MG ? GO:0003735 ... Q5SHQ7 26028538
    189 4z3s:2Q (2.65) BS01 rna ? GO:0000049 ... P60489 26028538
    190 4z3s:2Q (2.65) BS02 rna ? GO:0000049 ... P60489 26028538
    191 4z3s:2Q (2.65) BS03 rna ? GO:0000049 ... P60489 26028538
    192 4z3s:2Q (2.65) BS04 MG ? GO:0000049 ... P60489 26028538
    193 4z3s:2Q (2.65) BS05 MG ? GO:0000049 ... P60489 26028538
    194 4z3s:2R (2.65) BS01 rna ? GO:0003735 ... Q9Z9H5 26028538
    195 4z3s:2S (2.65) BS01 rna ? GO:0003735 ... Q5SHQ4 26028538
    196 4z3s:2S (2.65) BS02 rna ? GO:0003735 ... Q5SHQ4 26028538
    197 4z3s:2T (2.65) BS01 rna ? GO:0003735 ... P60490 26028538
    198 4z3s:2T (2.65) BS02 rna ? GO:0003735 ... P60490 26028538
    199 4z3s:2U (2.65) BS01 rna ? GO:0000027 ... P60491 26028538
    200 4z3s:2U (2.65) BS02 MG ? GO:0000027 ... P60491 26028538
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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