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BioLiP
Download all results in tab-seperated text for 39 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4ym7:AA (5.5) BS01 ZN 2.7.7.6 GO:0000428 ... P10964 26327374
    2 4ym7:AA (5.5) BS02 ZN 2.7.7.6 GO:0000428 ... P10964 26327374
    3 4ym7:AB (5.5) BS01 ZN 2.7.7.6 GO:0000428 ... P22138 26327374
    4 4ym7:AI (5.5) BS01 ZN ? GO:0000122 ... P32529 26327374
    5 4ym7:AJ (5.5) BS01 ZN ? GO:0000428 ... P22139 26327374
    6 4ym7:AL (5.5) BS01 ZN ? GO:0000428 ... P40422 26327374
    7 4ym7:BA (5.5) BS01 ZN 2.7.7.6 GO:0000428 ... P10964 26327374
    8 4ym7:BA (5.5) BS02 ZN 2.7.7.6 GO:0000428 ... P10964 26327374
    9 4ym7:BB (5.5) BS01 ZN 2.7.7.6 GO:0000428 ... P22138 26327374
    10 4ym7:BI (5.5) BS01 ZN ? GO:0000122 ... P32529 26327374
    11 4ym7:BI (5.5) BS02 ZN ? GO:0000122 ... P32529 26327374
    12 4ym7:BJ (5.5) BS01 ZN ? GO:0000428 ... P22139 26327374
    13 4ym7:BL (5.5) BS01 ZN ? GO:0000428 ... P40422 26327374
    14 4ym7:CA (5.5) BS01 ZN 2.7.7.6 GO:0000428 ... P10964 26327374
    15 4ym7:CA (5.5) BS02 ZN 2.7.7.6 GO:0000428 ... P10964 26327374
    16 4ym7:CB (5.5) BS01 ZN 2.7.7.6 GO:0000428 ... P22138 26327374
    17 4ym7:CI (5.5) BS01 ZN ? GO:0000122 ... P32529 26327374
    18 4ym7:CI (5.5) BS02 ZN ? GO:0000122 ... P32529 26327374
    19 4ym7:CJ (5.5) BS01 ZN ? GO:0000428 ... P22139 26327374
    20 4ym7:CL (5.5) BS01 ZN ? GO:0000428 ... P40422 26327374
    21 4ym7:DA (5.5) BS01 ZN 2.7.7.6 GO:0000428 ... P10964 26327374
    22 4ym7:DA (5.5) BS02 ZN 2.7.7.6 GO:0000428 ... P10964 26327374
    23 4ym7:DB (5.5) BS01 ZN 2.7.7.6 GO:0000428 ... P22138 26327374
    24 4ym7:DI (5.5) BS01 ZN ? GO:0000122 ... P32529 26327374
    25 4ym7:DJ (5.5) BS01 ZN ? GO:0000428 ... P22139 26327374
    26 4ym7:DL (5.5) BS01 ZN ? GO:0000428 ... P40422 26327374
    27 4ym7:EA (5.5) BS01 ZN 2.7.7.6 GO:0000428 ... P10964 26327374
    28 4ym7:EA (5.5) BS02 ZN 2.7.7.6 GO:0000428 ... P10964 26327374
    29 4ym7:EB (5.5) BS01 ZN 2.7.7.6 GO:0000428 ... P22138 26327374
    30 4ym7:EI (5.5) BS01 ZN ? GO:0000122 ... P32529 26327374
    31 4ym7:EI (5.5) BS02 ZN ? GO:0000122 ... P32529 26327374
    32 4ym7:EJ (5.5) BS01 ZN ? GO:0000428 ... P22139 26327374
    33 4ym7:EL (5.5) BS01 ZN ? GO:0000428 ... P40422 26327374
    34 4ym7:FA (5.5) BS01 ZN 2.7.7.6 GO:0000428 ... P10964 26327374
    35 4ym7:FA (5.5) BS02 ZN 2.7.7.6 GO:0000428 ... P10964 26327374
    36 4ym7:FB (5.5) BS01 ZN 2.7.7.6 GO:0000428 ... P22138 26327374
    37 4ym7:FI (5.5) BS01 ZN ? GO:0000122 ... P32529 26327374
    38 4ym7:FJ (5.5) BS01 ZN ? GO:0000428 ... P22139 26327374
    39 4ym7:FL (5.5) BS01 ZN ? GO:0000428 ... P40422 26327374
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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