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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 244 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4y4o:10 (2.3) BS01 rna ? GO:0003735 ... P60493 25775268
    2 4y4o:10 (2.3) BS02 rna ? GO:0003735 ... P60493 25775268
    3 4y4o:10 (2.3) BS03 MG ? GO:0003735 ... P60493 25775268
    4 4y4o:10 (2.3) BS04 MG ? GO:0003735 ... P60493 25775268
    5 4y4o:10 (2.3) BS05 MG ? GO:0003735 ... P60493 25775268
    6 4y4o:11 (2.3) BS01 rna ? GO:0003735 ... P60494 25775268
    7 4y4o:11 (2.3) BS02 MG ? GO:0003735 ... P60494 25775268
    8 4y4o:12 (2.3) BS01 rna ? GO:0003735 ... Q5SHP6 25775268
    9 4y4o:13 (2.3) BS01 rna ? GO:0003735 ... Q5SHQ6 25775268
    10 4y4o:13 (2.3) BS02 rna ? GO:0003735 ... Q5SHQ6 25775268
    11 4y4o:13 (2.3) BS03 MG ? GO:0003735 ... Q5SHQ6 25775268
    12 4y4o:13 (2.3) BS04 MG ? GO:0003735 ... Q5SHQ6 25775268
    13 4y4o:13 (2.3) BS05 MG ? GO:0003735 ... Q5SHQ6 25775268
    14 4y4o:13 (2.3) BS06 MG ? GO:0003735 ... Q5SHQ6 25775268
    15 4y4o:14 (2.3) BS01 rna ? GO:0003735 ... Q5SJE1 25775268
    16 4y4o:14 (2.3) BS02 ZN ? GO:0003735 ... Q5SJE1 25775268
    17 4y4o:15 (2.3) BS01 rna ? GO:0003735 ... P80339 25775268
    18 4y4o:15 (2.3) BS02 MG ? GO:0003735 ... P80339 25775268
    19 4y4o:15 (2.3) BS03 ZN ? GO:0003735 ... P80339 25775268
    20 4y4o:16 (2.3) BS01 rna ? GO:0000049 ... P35871 25775268
    21 4y4o:16 (2.3) BS02 ZN ? GO:0000049 ... P35871 25775268
    22 4y4o:17 (2.3) BS01 rna ? GO:0003735 ... P80340 25775268
    23 4y4o:17 (2.3) BS02 MG ? GO:0003735 ... P80340 25775268
    24 4y4o:17 (2.3) BS03 MG ? GO:0003735 ... P80340 25775268
    25 4y4o:18 (2.3) BS01 rna ? GO:0003735 ... Q5SKU1 25775268
    26 4y4o:18 (2.3) BS02 MG ? GO:0003735 ... Q5SKU1 25775268
    27 4y4o:19 (2.3) BS01 rna ? GO:0003735 ... Q5SHR2 25775268
    28 4y4o:19 (2.3) BS02 ZN ? GO:0003735 ... Q5SHR2 25775268
    29 4y4o:1D (2.3) BS01 rna ? GO:0002181 ... P60405 25775268
    30 4y4o:1D (2.3) BS02 rna ? GO:0002181 ... P60405 25775268
    31 4y4o:1D (2.3) BS03 MG ? GO:0002181 ... P60405 25775268
    32 4y4o:1D (2.3) BS04 MG ? GO:0002181 ... P60405 25775268
    33 4y4o:1D (2.3) BS05 MG ? GO:0002181 ... P60405 25775268
    34 4y4o:1D (2.3) BS06 MG ? GO:0002181 ... P60405 25775268
    35 4y4o:1D (2.3) BS07 MG ? GO:0002181 ... P60405 25775268
    36 4y4o:1D (2.3) BS08 MG ? GO:0002181 ... P60405 25775268
    37 4y4o:1D (2.3) BS09 MG ? GO:0002181 ... P60405 25775268
    38 4y4o:1D (2.3) BS10 MG ? GO:0002181 ... P60405 25775268
    39 4y4o:1D (2.3) BS11 MG ? GO:0002181 ... P60405 25775268
    40 4y4o:1D (2.3) BS12 MG ? GO:0002181 ... P60405 25775268
    41 4y4o:1E (2.3) BS01 rna ? GO:0003735 ... Q5SHN8 25775268
    42 4y4o:1E (2.3) BS02 MG ? GO:0003735 ... Q5SHN8 25775268
    43 4y4o:1E (2.3) BS03 MG ? GO:0003735 ... Q5SHN8 25775268
    44 4y4o:1E (2.3) BS04 MG ? GO:0003735 ... Q5SHN8 25775268
    45 4y4o:1E (2.3) BS05 MG ? GO:0003735 ... Q5SHN8 25775268
    46 4y4o:1F (2.3) BS01 rna ? GO:0003735 ... Q5SHN9 25775268
    47 4y4o:1F (2.3) BS02 MG ? GO:0003735 ... Q5SHN9 25775268
    48 4y4o:1F (2.3) BS03 MG ? GO:0003735 ... Q5SHN9 25775268
    49 4y4o:1F (2.3) BS04 MG ? GO:0003735 ... Q5SHN9 25775268
    50 4y4o:1F (2.3) BS05 MG ? GO:0003735 ... Q5SHN9 25775268
    51 4y4o:1F (2.3) BS06 MG ? GO:0003735 ... Q5SHN9 25775268
    52 4y4o:1F (2.3) BS07 MG ? GO:0003735 ... Q5SHN9 25775268
    53 4y4o:1F (2.3) BS08 MG ? GO:0003735 ... Q5SHN9 25775268
    54 4y4o:1F (2.3) BS09 MG ? GO:0003735 ... Q5SHN9 25775268
    55 4y4o:1F (2.3) BS10 MG ? GO:0003735 ... Q5SHN9 25775268
    56 4y4o:1F (2.3) BS11 MG ? GO:0003735 ... Q5SHN9 25775268
    57 4y4o:1F (2.3) BS12 MG ? GO:0003735 ... Q5SHN9 25775268
    58 4y4o:1F (2.3) BS13 MG ? GO:0003735 ... Q5SHN9 25775268
    59 4y4o:1F (2.3) BS14 MG ? GO:0003735 ... Q5SHN9 25775268
    60 4y4o:1F (2.3) BS15 MG ? GO:0003735 ... Q5SHN9 25775268
    61 4y4o:1F (2.3) BS16 ARG ? GO:0003735 ... Q5SHN9 25775268
    62 4y4o:1G (2.3) BS01 rna ? GO:0000049 ... Q5SHQ0 25775268
    63 4y4o:1G (2.3) BS02 rna ? GO:0000049 ... Q5SHQ0 25775268
    64 4y4o:1G (2.3) BS03 MG ? GO:0000049 ... Q5SHQ0 25775268
    65 4y4o:1G (2.3) BS04 MG ? GO:0000049 ... Q5SHQ0 25775268
    66 4y4o:1G (2.3) BS05 MG ? GO:0000049 ... Q5SHQ0 25775268
    67 4y4o:1H (2.3) BS01 rna N/A GO:0003735 ... N/A 25775268
    68 4y4o:1I (2.3) BS01 rna ? GO:0003735 ... Q5SLQ1 25775268
    69 4y4o:1N (2.3) BS01 rna ? GO:0003729 ... P60488 25775268
    70 4y4o:1N (2.3) BS02 MG ? GO:0003729 ... P60488 25775268
    71 4y4o:1N (2.3) BS03 MG ? GO:0003729 ... P60488 25775268
    72 4y4o:1O (2.3) BS01 rna ? GO:0003735 ... Q5SHP8 25775268
    73 4y4o:1O (2.3) BS02 rna ? GO:0003735 ... Q5SHP8 25775268
    74 4y4o:1P (2.3) BS01 rna ? GO:0003735 ... Q5SHQ7 25775268
    75 4y4o:1P (2.3) BS02 MG ? GO:0003735 ... Q5SHQ7 25775268
    76 4y4o:1P (2.3) BS03 MG ? GO:0003735 ... Q5SHQ7 25775268
    77 4y4o:1P (2.3) BS04 MG ? GO:0003735 ... Q5SHQ7 25775268
    78 4y4o:1Q (2.3) BS01 rna ? GO:0000049 ... P60489 25775268
    79 4y4o:1Q (2.3) BS02 rna ? GO:0000049 ... P60489 25775268
    80 4y4o:1Q (2.3) BS03 MG ? GO:0000049 ... P60489 25775268
    81 4y4o:1Q (2.3) BS04 MG ? GO:0000049 ... P60489 25775268
    82 4y4o:1Q (2.3) BS05 MG ? GO:0000049 ... P60489 25775268
    83 4y4o:1Q (2.3) BS06 MG ? GO:0000049 ... P60489 25775268
    84 4y4o:1R (2.3) BS01 rna ? GO:0003735 ... Q9Z9H5 25775268
    85 4y4o:1R (2.3) BS02 MG ? GO:0003735 ... Q9Z9H5 25775268
    86 4y4o:1R (2.3) BS03 MG ? GO:0003735 ... Q9Z9H5 25775268
    87 4y4o:1R (2.3) BS04 MG ? GO:0003735 ... Q9Z9H5 25775268
    88 4y4o:1R (2.3) BS05 MG ? GO:0003735 ... Q9Z9H5 25775268
    89 4y4o:1S (2.3) BS01 rna ? GO:0003735 ... Q5SHQ4 25775268
    90 4y4o:1S (2.3) BS02 rna ? GO:0003735 ... Q5SHQ4 25775268
    91 4y4o:1T (2.3) BS01 rna ? GO:0003735 ... P60490 25775268
    92 4y4o:1T (2.3) BS02 rna ? GO:0003735 ... P60490 25775268
    93 4y4o:1U (2.3) BS01 rna ? GO:0000027 ... P60491 25775268
    94 4y4o:1U (2.3) BS02 MG ? GO:0000027 ... P60491 25775268
    95 4y4o:1U (2.3) BS03 MG ? GO:0000027 ... P60491 25775268
    96 4y4o:1U (2.3) BS04 MG ? GO:0000027 ... P60491 25775268
    97 4y4o:1U (2.3) BS05 MG ? GO:0000027 ... P60491 25775268
    98 4y4o:1U (2.3) BS06 MG ? GO:0000027 ... P60491 25775268
    99 4y4o:1U (2.3) BS07 MG ? GO:0000027 ... P60491 25775268
    100 4y4o:1V (2.3) BS01 rna ? GO:0003723 ... P60492 25775268
    101 4y4o:1V (2.3) BS02 MG ? GO:0003723 ... P60492 25775268
    102 4y4o:1V (2.3) BS03 MG ? GO:0003723 ... P60492 25775268
    103 4y4o:1V (2.3) BS04 MG ? GO:0003723 ... P60492 25775268
    104 4y4o:1W (2.3) BS01 rna ? GO:0003735 ... Q5SHP3 25775268
    105 4y4o:1W (2.3) BS02 MG ? GO:0003735 ... Q5SHP3 25775268
    106 4y4o:1W (2.3) BS03 MG ? GO:0003735 ... Q5SHP3 25775268
    107 4y4o:1X (2.3) BS01 rna ? GO:0000027 ... Q5SHP0 25775268
    108 4y4o:1Y (2.3) BS01 rna ? GO:0003723 ... Q5SHP9 25775268
    109 4y4o:1Y (2.3) BS02 ZN ? GO:0003723 ... Q5SHP9 25775268
    110 4y4o:1Z (2.3) BS01 rna ? GO:0003723 ... Q5SHZ1 25775268
    111 4y4o:1Z (2.3) BS02 rna ? GO:0003723 ... Q5SHZ1 25775268
    112 4y4o:1b (2.3) BS01 rna ? GO:0003735 ... P80371 25775268
    113 4y4o:1b (2.3) BS02 MG ? GO:0003735 ... P80371 25775268
    114 4y4o:1c (2.3) BS01 rna ? GO:0003676 ... P80372 25775268
    115 4y4o:1d (2.3) BS01 rna ? GO:0003723 ... P80373 25775268
    116 4y4o:1d (2.3) BS02 SF4 ? GO:0003723 ... P80373 25775268
    117 4y4o:1e (2.3) BS01 rna ? GO:0003723 ... Q5SHQ5 25775268
    118 4y4o:1e (2.3) BS02 MG ? GO:0003723 ... Q5SHQ5 25775268
    119 4y4o:1f (2.3) BS01 rna ? GO:0003735 ... Q5SLP8 25775268
    120 4y4o:1f (2.3) BS02 MG ? GO:0003735 ... Q5SLP8 25775268
    121 4y4o:1g (2.3) BS01 rna ? GO:0000028 ... P17291 25775268
    122 4y4o:1h (2.3) BS01 rna N/A GO:0003735 ... N/A 25775268
    123 4y4o:1i (2.3) BS01 rna ? GO:0000049 ... P80374 25775268
    124 4y4o:1j (2.3) BS01 rna ? GO:0000049 ... Q5SHN7 25775268
    125 4y4o:1k (2.3) BS01 rna ? GO:0003735 ... P80376 25775268
    126 4y4o:1k (2.3) BS02 MG ? GO:0003735 ... P80376 25775268
    127 4y4o:1l (2.3) BS01 rna ? GO:0000049 ... Q5SHN3 25775268
    128 4y4o:1l (2.3) BS02 MG ? GO:0000049 ... Q5SHN3 25775268
    129 4y4o:1m (2.3) BS01 rna ? GO:0000049 ... P80377 25775268
    130 4y4o:1m (2.3) BS02 MG ? GO:0000049 ... P80377 25775268
    131 4y4o:1n (2.3) BS01 rna N/A GO:0003735 ... N/A 25775268
    132 4y4o:1n (2.3) BS02 ZN N/A GO:0003735 ... N/A 25775268
    133 4y4o:1n (2.3) BS03 MG N/A GO:0003735 ... N/A 25775268
    134 4y4o:1o (2.3) BS01 rna ? GO:0003735 ... Q5SJ76 25775268
    135 4y4o:1o (2.3) BS02 rna ? GO:0003735 ... Q5SJ76 25775268
    136 4y4o:1p (2.3) BS01 rna ? GO:0003735 ... Q5SJH3 25775268
    137 4y4o:1q (2.3) BS01 rna N/A GO:0003735 ... N/A 25775268
    138 4y4o:1r (2.3) BS01 rna ? GO:0003735 ... Q5SLQ0 25775268
    139 4y4o:1s (2.3) BS01 rna ? GO:0000028 ... Q5SHP2 25775268
    140 4y4o:1t (2.3) BS01 rna ? GO:0003723 ... P80380 25775268
    141 4y4o:1t (2.3) BS02 MG ? GO:0003723 ... P80380 25775268
    142 4y4o:1y (2.3) BS01 rna ? GO:0005515 ... P0AD49 25775268
    143 4y4o:1y (2.3) BS02 MG ? GO:0005515 ... P0AD49 25775268
    144 4y4o:1y (2.3) BS03 MG ? GO:0005515 ... P0AD49 25775268
    145 4y4o:20 (2.3) BS01 rna ? GO:0003735 ... P60493 25775268
    146 4y4o:20 (2.3) BS02 rna ? GO:0003735 ... P60493 25775268
    147 4y4o:21 (2.3) BS01 rna ? GO:0003735 ... P60494 25775268
    148 4y4o:22 (2.3) BS01 rna ? GO:0003735 ... Q5SHP6 25775268
    149 4y4o:23 (2.3) BS01 rna ? GO:0003735 ... Q5SHQ6 25775268
    150 4y4o:23 (2.3) BS02 rna ? GO:0003735 ... Q5SHQ6 25775268
    151 4y4o:23 (2.3) BS03 MG ? GO:0003735 ... Q5SHQ6 25775268
    152 4y4o:24 (2.3) BS01 rna ? GO:0003735 ... Q5SJE1 25775268
    153 4y4o:24 (2.3) BS02 ZN ? GO:0003735 ... Q5SJE1 25775268
    154 4y4o:25 (2.3) BS01 rna ? GO:0003735 ... P80339 25775268
    155 4y4o:25 (2.3) BS02 MG ? GO:0003735 ... P80339 25775268
    156 4y4o:25 (2.3) BS03 MG ? GO:0003735 ... P80339 25775268
    157 4y4o:25 (2.3) BS04 ZN ? GO:0003735 ... P80339 25775268
    158 4y4o:26 (2.3) BS01 rna ? GO:0000049 ... P35871 25775268
    159 4y4o:26 (2.3) BS02 ZN ? GO:0000049 ... P35871 25775268
    160 4y4o:27 (2.3) BS01 rna ? GO:0003735 ... P80340 25775268
    161 4y4o:27 (2.3) BS02 MG ? GO:0003735 ... P80340 25775268
    162 4y4o:28 (2.3) BS01 rna ? GO:0003735 ... Q5SKU1 25775268
    163 4y4o:29 (2.3) BS01 rna ? GO:0003735 ... Q5SHR2 25775268
    164 4y4o:29 (2.3) BS02 ZN ? GO:0003735 ... Q5SHR2 25775268
    165 4y4o:2D (2.3) BS01 rna ? GO:0002181 ... P60405 25775268
    166 4y4o:2D (2.3) BS02 rna ? GO:0002181 ... P60405 25775268
    167 4y4o:2D (2.3) BS03 MG ? GO:0002181 ... P60405 25775268
    168 4y4o:2D (2.3) BS04 MG ? GO:0002181 ... P60405 25775268
    169 4y4o:2D (2.3) BS05 MG ? GO:0002181 ... P60405 25775268
    170 4y4o:2D (2.3) BS06 MG ? GO:0002181 ... P60405 25775268
    171 4y4o:2D (2.3) BS07 MG ? GO:0002181 ... P60405 25775268
    172 4y4o:2D (2.3) BS08 MG ? GO:0002181 ... P60405 25775268
    173 4y4o:2D (2.3) BS09 MG ? GO:0002181 ... P60405 25775268
    174 4y4o:2D (2.3) BS10 MG ? GO:0002181 ... P60405 25775268
    175 4y4o:2E (2.3) BS01 rna ? GO:0003735 ... Q5SHN8 25775268
    176 4y4o:2E (2.3) BS02 MG ? GO:0003735 ... Q5SHN8 25775268
    177 4y4o:2E (2.3) BS03 MG ? GO:0003735 ... Q5SHN8 25775268
    178 4y4o:2F (2.3) BS01 rna ? GO:0003735 ... Q5SHN9 25775268
    179 4y4o:2F (2.3) BS02 MG ? GO:0003735 ... Q5SHN9 25775268
    180 4y4o:2F (2.3) BS03 MG ? GO:0003735 ... Q5SHN9 25775268
    181 4y4o:2F (2.3) BS04 MG ? GO:0003735 ... Q5SHN9 25775268
    182 4y4o:2F (2.3) BS05 MG ? GO:0003735 ... Q5SHN9 25775268
    183 4y4o:2G (2.3) BS01 rna ? GO:0000049 ... Q5SHQ0 25775268
    184 4y4o:2G (2.3) BS02 rna ? GO:0000049 ... Q5SHQ0 25775268
    185 4y4o:2G (2.3) BS03 MG ? GO:0000049 ... Q5SHQ0 25775268
    186 4y4o:2G (2.3) BS04 MG ? GO:0000049 ... Q5SHQ0 25775268
    187 4y4o:2H (2.3) BS01 rna N/A GO:0003735 ... N/A 25775268
    188 4y4o:2I (2.3) BS01 rna ? GO:0003735 ... Q5SLQ1 25775268
    189 4y4o:2N (2.3) BS01 rna ? GO:0003729 ... P60488 25775268
    190 4y4o:2O (2.3) BS01 rna ? GO:0003735 ... Q5SHP8 25775268
    191 4y4o:2O (2.3) BS02 rna ? GO:0003735 ... Q5SHP8 25775268
    192 4y4o:2P (2.3) BS01 rna ? GO:0003735 ... Q5SHQ7 25775268
    193 4y4o:2Q (2.3) BS01 rna ? GO:0000049 ... P60489 25775268
    194 4y4o:2Q (2.3) BS02 rna ? GO:0000049 ... P60489 25775268
    195 4y4o:2Q (2.3) BS03 MG ? GO:0000049 ... P60489 25775268
    196 4y4o:2Q (2.3) BS04 MG ? GO:0000049 ... P60489 25775268
    197 4y4o:2R (2.3) BS01 rna ? GO:0003735 ... Q9Z9H5 25775268
    198 4y4o:2R (2.3) BS02 MG ? GO:0003735 ... Q9Z9H5 25775268
    199 4y4o:2S (2.3) BS01 rna ? GO:0003735 ... Q5SHQ4 25775268
    200 4y4o:2S (2.3) BS02 rna ? GO:0003735 ... Q5SHQ4 25775268
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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