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BioLiP
Download all results in tab-seperated text for 143 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4wzd:11 (3.1) BS01 rna ? GO:0002181 ... P60405 26037619
    2 4wzd:11 (3.1) BS02 MG ? GO:0002181 ... P60405 26037619
    3 4wzd:12 (3.1) BS01 rna ? GO:0003735 ... P80371 26037619
    4 4wzd:15 (3.1) BS01 rna ? GO:0003729 ... P60488 26037619
    5 4wzd:19 (3.1) BS01 rna ? GO:0002181 ... P60405 26037619
    6 4wzd:19 (3.1) BS02 rna ? GO:0002181 ... P60405 26037619
    7 4wzd:19 (3.1) BS03 MG ? GO:0002181 ... P60405 26037619
    8 4wzd:19 (3.1) BS04 MG ? GO:0002181 ... P60405 26037619
    9 4wzd:1A (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 26037619
    10 4wzd:1E (3.1) BS01 rna ? GO:0003735 ... P80371 26037619
    11 4wzd:1I (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 26037619
    12 4wzd:21 (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 26037619
    13 4wzd:21 (3.1) BS02 MG ? GO:0003735 ... Q5SHN8 26037619
    14 4wzd:22 (3.1) BS01 rna ? GO:0003676 ... P80372 26037619
    15 4wzd:25 (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 26037619
    16 4wzd:25 (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 26037619
    17 4wzd:29 (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 26037619
    18 4wzd:2A (3.1) BS01 rna ? GO:0003735 ... P80376 26037619
    19 4wzd:2A (3.1) BS02 MG ? GO:0003735 ... P80376 26037619
    20 4wzd:2E (3.1) BS01 rna ? GO:0003676 ... P80372 26037619
    21 4wzd:2E (3.1) BS02 rna ? GO:0003676 ... P80372 26037619
    22 4wzd:2I (3.1) BS01 rna ? GO:0003735 ... P80376 26037619
    23 4wzd:2I (3.1) BS02 MG ? GO:0003735 ... P80376 26037619
    24 4wzd:31 (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 26037619
    25 4wzd:32 (3.1) BS01 rna ? GO:0003723 ... P80373 26037619
    26 4wzd:32 (3.1) BS02 ZN ? GO:0003723 ... P80373 26037619
    27 4wzd:35 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 26037619
    28 4wzd:39 (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 26037619
    29 4wzd:39 (3.1) BS02 MG ? GO:0003735 ... Q5SHN9 26037619
    30 4wzd:3A (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 26037619
    31 4wzd:3E (3.1) BS01 rna ? GO:0003723 ... P80373 26037619
    32 4wzd:3E (3.1) BS02 MG ? GO:0003723 ... P80373 26037619
    33 4wzd:3I (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 26037619
    34 4wzd:3I (3.1) BS02 MG ? GO:0000049 ... Q5SHN3 26037619
    35 4wzd:41 (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 26037619
    36 4wzd:41 (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 26037619
    37 4wzd:42 (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 26037619
    38 4wzd:45 (3.1) BS01 rna ? GO:0000049 ... P60489 26037619
    39 4wzd:45 (3.1) BS02 rna ? GO:0000049 ... P60489 26037619
    40 4wzd:49 (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 26037619
    41 4wzd:49 (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 26037619
    42 4wzd:49 (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 26037619
    43 4wzd:4A (3.1) BS01 rna ? GO:0000049 ... P80377 26037619
    44 4wzd:4A (3.1) BS02 rna ? GO:0000049 ... P80377 26037619
    45 4wzd:4A (3.1) BS03 MG ? GO:0000049 ... P80377 26037619
    46 4wzd:4E (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 26037619
    47 4wzd:4I (3.1) BS01 rna ? GO:0000049 ... P80377 26037619
    48 4wzd:51 (3.1) BS01 rna ? GO:0002181 ... P0DOY8 26037619
    49 4wzd:52 (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 26037619
    50 4wzd:55 (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 26037619
    51 4wzd:58 (3.1) BS01 rna ? GO:0003729 ... P60488 26037619
    52 4wzd:59 (3.1) BS01 rna ? GO:0002181 ... P0DOY8 26037619
    53 4wzd:5A (3.1) BS01 rna ? GO:0003735 ... P0DOY6 26037619
    54 4wzd:5A (3.1) BS02 ZN ? GO:0003735 ... P0DOY6 26037619
    55 4wzd:5E (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 26037619
    56 4wzd:5I (3.1) BS01 rna ? GO:0003735 ... P0DOY6 26037619
    57 4wzd:5I (3.1) BS02 ZN ? GO:0003735 ... P0DOY6 26037619
    58 4wzd:61 (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 26037619
    59 4wzd:62 (3.1) BS01 rna ? GO:0000028 ... P17291 26037619
    60 4wzd:62 (3.1) BS02 rna ? GO:0000028 ... P17291 26037619
    61 4wzd:65 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 26037619
    62 4wzd:65 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 26037619
    63 4wzd:68 (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 26037619
    64 4wzd:68 (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 26037619
    65 4wzd:69 (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 26037619
    66 4wzd:69 (3.1) BS02 rna ? GO:0003735 ... Q5SLQ1 26037619
    67 4wzd:6A (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 26037619
    68 4wzd:6A (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 26037619
    69 4wzd:6E (3.1) BS01 rna ? GO:0000028 ... P17291 26037619
    70 4wzd:6E (3.1) BS02 rna ? GO:0000028 ... P17291 26037619
    71 4wzd:6I (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 26037619
    72 4wzd:6I (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 26037619
    73 4wzd:71 (3.1) BS01 rna ? GO:0000049 ... P27150 26037619
    74 4wzd:71 (3.1) BS02 rna ? GO:0000049 ... P27150 26037619
    75 4wzd:72 (3.1) BS01 rna ? GO:0003735 ... P0DOY9 26037619
    76 4wzd:75 (3.1) BS01 rna ? GO:0003735 ... P60490 26037619
    77 4wzd:75 (3.1) BS02 rna ? GO:0003735 ... P60490 26037619
    78 4wzd:78 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 26037619
    79 4wzd:79 (3.1) BS01 rna ? GO:0000049 ... P27150 26037619
    80 4wzd:79 (3.1) BS02 rna ? GO:0000049 ... P27150 26037619
    81 4wzd:7A (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 26037619
    82 4wzd:7E (3.1) BS01 rna ? GO:0003735 ... P0DOY9 26037619
    83 4wzd:7I (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 26037619
    84 4wzd:82 (3.1) BS01 rna ? GO:0000049 ... P80374 26037619
    85 4wzd:82 (3.1) BS02 rna ? GO:0000049 ... P80374 26037619
    86 4wzd:85 (3.1) BS01 rna ? GO:0000027 ... P60491 26037619
    87 4wzd:85 (3.1) BS02 MG ? GO:0000027 ... P60491 26037619
    88 4wzd:88 (3.1) BS01 rna ? GO:0000049 ... P60489 26037619
    89 4wzd:88 (3.1) BS02 rna ? GO:0000049 ... P60489 26037619
    90 4wzd:88 (3.1) BS03 MG ? GO:0000049 ... P60489 26037619
    91 4wzd:8A (3.1) BS01 rna N/A GO:0003735 ... N/A 26037619
    92 4wzd:8E (3.1) BS01 rna ? GO:0000049 ... P80374 26037619
    93 4wzd:8E (3.1) BS02 rna ? GO:0000049 ... P80374 26037619
    94 4wzd:8I (3.1) BS01 rna N/A GO:0003735 ... N/A 26037619
    95 4wzd:95 (3.1) BS01 rna ? GO:0003723 ... P60492 26037619
    96 4wzd:98 (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 26037619
    97 4wzd:9A (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 26037619
    98 4wzd:9I (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 26037619
    99 4wzd:A5 (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 26037619
    100 4wzd:A8 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 26037619
    101 4wzd:A8 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 26037619
    102 4wzd:AA (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 26037619
    103 4wzd:AI (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 26037619
    104 4wzd:B5 (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 26037619
    105 4wzd:B8 (3.1) BS01 rna ? GO:0003735 ... P60490 26037619
    106 4wzd:B8 (3.1) BS02 rna ? GO:0003735 ... P60490 26037619
    107 4wzd:BA (3.1) BS01 rna ? GO:0003723 ... P80380 26037619
    108 4wzd:BI (3.1) BS01 rna ? GO:0003723 ... P80380 26037619
    109 4wzd:C5 (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 26037619
    110 4wzd:C5 (3.1) BS02 ZN ? GO:0003723 ... Q5SHP9 26037619
    111 4wzd:C8 (3.1) BS01 rna ? GO:0000027 ... P60491 26037619
    112 4wzd:D5 (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 26037619
    113 4wzd:D5 (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 26037619
    114 4wzd:D8 (3.1) BS01 rna ? GO:0003723 ... P60492 26037619
    115 4wzd:E5 (3.1) BS01 rna ? GO:0003735 ... P60493 26037619
    116 4wzd:E5 (3.1) BS02 rna ? GO:0003735 ... P60493 26037619
    117 4wzd:E8 (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 26037619
    118 4wzd:F5 (3.1) BS01 rna ? GO:0003735 ... P60494 26037619
    119 4wzd:F8 (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 26037619
    120 4wzd:G5 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 26037619
    121 4wzd:G8 (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 26037619
    122 4wzd:G8 (3.1) BS02 ZN ? GO:0003723 ... Q5SHP9 26037619
    123 4wzd:H5 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 26037619
    124 4wzd:H5 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 26037619
    125 4wzd:H8 (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 26037619
    126 4wzd:H8 (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 26037619
    127 4wzd:I5 (3.1) BS01 rna ? GO:0003735 ... Q5SJE1 26037619
    128 4wzd:I8 (3.1) BS01 rna ? GO:0003735 ... P60493 26037619
    129 4wzd:I8 (3.1) BS02 rna ? GO:0003735 ... P60493 26037619
    130 4wzd:J5 (3.1) BS01 rna ? GO:0003735 ... P80339 26037619
    131 4wzd:J8 (3.1) BS01 rna ? GO:0003735 ... P60494 26037619
    132 4wzd:J8 (3.1) BS02 rna ? GO:0003735 ... P60494 26037619
    133 4wzd:K5 (3.1) BS01 rna ? GO:0000049 ... P35871 26037619
    134 4wzd:K8 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 26037619
    135 4wzd:L5 (3.1) BS01 rna ? GO:0003735 ... P80340 26037619
    136 4wzd:L8 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 26037619
    137 4wzd:L8 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 26037619
    138 4wzd:M5 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 26037619
    139 4wzd:M8 (3.1) BS01 rna ? GO:0003735 ... Q5SJE1 26037619
    140 4wzd:N8 (3.1) BS01 rna ? GO:0003735 ... P80339 26037619
    141 4wzd:O8 (3.1) BS01 rna ? GO:0000049 ... P35871 26037619
    142 4wzd:P8 (3.1) BS01 rna ? GO:0003735 ... P80340 26037619
    143 4wzd:Q8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 26037619
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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