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BioLiP
Download all results in tab-seperated text for 121 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4wt8:AA (3.4) BS01 rna ? GO:0003735 ... P80371 25562208
    2 4wt8:AC (3.4) BS01 rna ? GO:0003676 ... P80372 25562208
    3 4wt8:AD (3.4) BS01 rna ? GO:0003723 ... P80373 25562208
    4 4wt8:AE (3.4) BS01 rna ? GO:0003723 ... Q5SHQ5 25562208
    5 4wt8:AF (3.4) BS01 rna ? GO:0003735 ... Q5SLP8 25562208
    6 4wt8:AG (3.4) BS01 rna ? GO:0000028 ... P17291 25562208
    7 4wt8:AG (3.4) BS02 rna ? GO:0000028 ... P17291 25562208
    8 4wt8:AH (3.4) BS01 rna ? GO:0003735 ... P0DOY9 25562208
    9 4wt8:AI (3.4) BS01 rna ? GO:0000049 ... P80374 25562208
    10 4wt8:AJ (3.4) BS01 rna ? GO:0000049 ... Q5SHN7 25562208
    11 4wt8:AK (3.4) BS01 rna ? GO:0003735 ... P80376 25562208
    12 4wt8:AL (3.4) BS01 rna ? GO:0000049 ... Q5SHN3 25562208
    13 4wt8:AM (3.4) BS01 rna ? GO:0000049 ... P80377 25562208
    14 4wt8:AM (3.4) BS02 rna ? GO:0000049 ... P80377 25562208
    15 4wt8:AN (3.4) BS01 rna ? GO:0003735 ... P0DOY6 25562208
    16 4wt8:AO (3.4) BS01 rna ? GO:0003735 ... Q5SJ76 25562208
    17 4wt8:AO (3.4) BS02 rna ? GO:0003735 ... Q5SJ76 25562208
    18 4wt8:AP (3.4) BS01 rna ? GO:0003735 ... Q5SJH3 25562208
    19 4wt8:AR (3.4) BS01 rna ? GO:0003735 ... P0DOY7 25562208
    20 4wt8:AS (3.4) BS01 rna ? GO:0003735 ... Q5SLQ0 25562208
    21 4wt8:AT (3.4) BS01 rna ? GO:0003723 ... Q5SHP2 25562208
    22 4wt8:AU (3.4) BS01 rna ? GO:0003723 ... P80380 25562208
    23 4wt8:BA (3.4) BS01 rna ? GO:0003735 ... P80371 25562208
    24 4wt8:BC (3.4) BS01 rna ? GO:0003676 ... P80372 25562208
    25 4wt8:BD (3.4) BS01 rna ? GO:0003723 ... P80373 25562208
    26 4wt8:BE (3.4) BS01 rna ? GO:0003723 ... Q5SHQ5 25562208
    27 4wt8:BF (3.4) BS01 rna ? GO:0003735 ... Q5SLP8 25562208
    28 4wt8:BG (3.4) BS01 rna ? GO:0000028 ... P17291 25562208
    29 4wt8:BG (3.4) BS02 rna ? GO:0000028 ... P17291 25562208
    30 4wt8:BH (3.4) BS01 rna ? GO:0003735 ... P0DOY9 25562208
    31 4wt8:BI (3.4) BS01 rna ? GO:0000049 ... P80374 25562208
    32 4wt8:BJ (3.4) BS01 rna ? GO:0000049 ... Q5SHN7 25562208
    33 4wt8:BK (3.4) BS01 rna ? GO:0003735 ... P80376 25562208
    34 4wt8:BL (3.4) BS01 rna ? GO:0000049 ... Q5SHN3 25562208
    35 4wt8:BM (3.4) BS01 rna ? GO:0000049 ... P80377 25562208
    36 4wt8:BM (3.4) BS02 rna ? GO:0000049 ... P80377 25562208
    37 4wt8:BM (3.4) BS03 rna ? GO:0000049 ... P80377 25562208
    38 4wt8:BN (3.4) BS01 rna ? GO:0003735 ... P0DOY6 25562208
    39 4wt8:BO (3.4) BS01 rna ? GO:0003735 ... Q5SJ76 25562208
    40 4wt8:BO (3.4) BS02 rna ? GO:0003735 ... Q5SJ76 25562208
    41 4wt8:BP (3.4) BS01 rna ? GO:0003735 ... Q5SJH3 25562208
    42 4wt8:BR (3.4) BS01 rna ? GO:0003735 ... P0DOY7 25562208
    43 4wt8:BS (3.4) BS01 rna ? GO:0003735 ... Q5SLQ0 25562208
    44 4wt8:BT (3.4) BS01 rna ? GO:0003723 ... Q5SHP2 25562208
    45 4wt8:BU (3.4) BS01 rna ? GO:0003723 ... P80380 25562208
    46 4wt8:C0 (3.4) BS01 rna ? GO:0003735 ... Q5SHR2 25562208
    47 4wt8:C6 (3.4) BS01 rna ? GO:0003735 ... P80339 25562208
    48 4wt8:C7 (3.4) BS01 rna ? GO:0003735 ... P35871 25562208
    49 4wt8:C8 (3.4) BS01 rna ? GO:0003735 ... P80340 25562208
    50 4wt8:C9 (3.4) BS01 rna ? GO:0003735 ... Q5SKU1 25562208
    51 4wt8:CA (3.4) BS01 rna ? N/A Q5SLP7 25562208
    52 4wt8:CB (3.4) BS01 rna ? GO:0002181 ... P60405 25562208
    53 4wt8:CC (3.4) BS01 rna ? GO:0003735 ... Q5SHN8 25562208
    54 4wt8:CD (3.4) BS01 rna ? GO:0003735 ... Q5SHN9 25562208
    55 4wt8:CE (3.4) BS01 rna ? GO:0000049 ... Q5SHQ0 25562208
    56 4wt8:CE (3.4) BS02 rna ? GO:0000049 ... Q5SHQ0 25562208
    57 4wt8:CE (3.4) BS03 rna ? GO:0000049 ... Q5SHQ0 25562208
    58 4wt8:CF (3.4) BS01 rna ? GO:0003735 ... P0DOY8 25562208
    59 4wt8:CH (3.4) BS01 rna ? GO:0003735 ... P60494 25562208
    60 4wt8:CI (3.4) BS01 rna ? GO:0003735 ... Q5SLQ1 25562208
    61 4wt8:CJ (3.4) BS01 rna N/A N/A N/A 25562208
    62 4wt8:CK (3.4) BS01 rna ? GO:0003735 ... Q5SHP6 25562208
    63 4wt8:CL (3.4) BS01 rna ? GO:0003735 ... Q5SHQ6 25562208
    64 4wt8:CM (3.4) BS01 rna ? GO:0003729 ... P60488 25562208
    65 4wt8:CN (3.4) BS01 rna ? GO:0003735 ... Q5SHP8 25562208
    66 4wt8:CN (3.4) BS02 rna ? GO:0003735 ... Q5SHP8 25562208
    67 4wt8:CO (3.4) BS01 rna ? GO:0003735 ... Q5SHQ7 25562208
    68 4wt8:CP (3.4) BS01 rna ? GO:0000049 ... P60489 25562208
    69 4wt8:CP (3.4) BS02 rna ? GO:0000049 ... P60489 25562208
    70 4wt8:CQ (3.4) BS01 rna ? GO:0003735 ... Q9Z9H5 25562208
    71 4wt8:CR (3.4) BS01 rna ? GO:0003735 ... Q5SHQ4 25562208
    72 4wt8:CR (3.4) BS02 rna ? GO:0003735 ... Q5SHQ4 25562208
    73 4wt8:CS (3.4) BS01 rna ? GO:0003735 ... P60490 25562208
    74 4wt8:CS (3.4) BS02 rna ? GO:0003735 ... P60490 25562208
    75 4wt8:CT (3.4) BS01 rna ? GO:0000027 ... P60491 25562208
    76 4wt8:CU (3.4) BS01 rna ? GO:0003723 ... P60492 25562208
    77 4wt8:CW (3.4) BS01 rna ? GO:0003735 ... Q5SHP3 25562208
    78 4wt8:CX (3.4) BS01 rna ? GO:0000027 ... Q5SHP0 25562208
    79 4wt8:CY (3.4) BS01 rna ? GO:0003723 ... Q5SHP9 25562208
    80 4wt8:CZ (3.4) BS01 rna ? GO:0003735 ... Q5SHZ1 25562208
    81 4wt8:CZ (3.4) BS02 rna ? GO:0003735 ... Q5SHZ1 25562208
    82 4wt8:Ca (3.4) BS01 rna ? GO:0003735 ... P60493 25562208
    83 4wt8:Ca (3.4) BS02 rna ? GO:0003735 ... P60493 25562208
    84 4wt8:D0 (3.4) BS01 rna ? GO:0003735 ... Q5SHR2 25562208
    85 4wt8:D6 (3.4) BS01 rna ? GO:0003735 ... P80339 25562208
    86 4wt8:D7 (3.4) BS01 rna ? GO:0003735 ... P35871 25562208
    87 4wt8:D8 (3.4) BS01 rna ? GO:0003735 ... P80340 25562208
    88 4wt8:D9 (3.4) BS01 rna ? GO:0003735 ... Q5SKU1 25562208
    89 4wt8:DA (3.4) BS01 rna ? N/A Q5SLP7 25562208
    90 4wt8:DB (3.4) BS01 rna ? GO:0002181 ... P60405 25562208
    91 4wt8:DC (3.4) BS01 rna ? GO:0003735 ... Q5SHN8 25562208
    92 4wt8:DD (3.4) BS01 rna ? GO:0003735 ... Q5SHN9 25562208
    93 4wt8:DE (3.4) BS01 rna ? GO:0000049 ... Q5SHQ0 25562208
    94 4wt8:DE (3.4) BS02 rna ? GO:0000049 ... Q5SHQ0 25562208
    95 4wt8:DE (3.4) BS03 rna ? GO:0000049 ... Q5SHQ0 25562208
    96 4wt8:DF (3.4) BS01 rna ? GO:0003735 ... P0DOY8 25562208
    97 4wt8:DH (3.4) BS01 rna ? GO:0003735 ... P60494 25562208
    98 4wt8:DI (3.4) BS01 rna ? GO:0003735 ... Q5SLQ1 25562208
    99 4wt8:DI (3.4) BS02 rna ? GO:0003735 ... Q5SLQ1 25562208
    100 4wt8:DJ (3.4) BS01 rna N/A N/A N/A 25562208
    101 4wt8:DK (3.4) BS01 rna ? GO:0003735 ... Q5SHP6 25562208
    102 4wt8:DL (3.4) BS01 rna ? GO:0003735 ... Q5SHQ6 25562208
    103 4wt8:DM (3.4) BS01 rna ? GO:0003729 ... P60488 25562208
    104 4wt8:DN (3.4) BS01 rna ? GO:0003735 ... Q5SHP8 25562208
    105 4wt8:DN (3.4) BS02 rna ? GO:0003735 ... Q5SHP8 25562208
    106 4wt8:DO (3.4) BS01 rna ? GO:0003735 ... Q5SHQ7 25562208
    107 4wt8:DP (3.4) BS01 rna ? GO:0000049 ... P60489 25562208
    108 4wt8:DQ (3.4) BS01 rna ? GO:0003735 ... Q9Z9H5 25562208
    109 4wt8:DR (3.4) BS01 rna ? GO:0003735 ... Q5SHQ4 25562208
    110 4wt8:DR (3.4) BS02 rna ? GO:0003735 ... Q5SHQ4 25562208
    111 4wt8:DS (3.4) BS01 rna ? GO:0003735 ... P60490 25562208
    112 4wt8:DS (3.4) BS02 rna ? GO:0003735 ... P60490 25562208
    113 4wt8:DT (3.4) BS01 rna ? GO:0000027 ... P60491 25562208
    114 4wt8:DU (3.4) BS01 rna ? GO:0003723 ... P60492 25562208
    115 4wt8:DW (3.4) BS01 rna ? GO:0003735 ... Q5SHP3 25562208
    116 4wt8:DX (3.4) BS01 rna ? GO:0000027 ... Q5SHP0 25562208
    117 4wt8:DY (3.4) BS01 rna ? GO:0003723 ... Q5SHP9 25562208
    118 4wt8:DZ (3.4) BS01 rna ? GO:0003735 ... Q5SHZ1 25562208
    119 4wt8:DZ (3.4) BS02 rna ? GO:0003735 ... Q5SHZ1 25562208
    120 4wt8:Da (3.4) BS01 rna ? GO:0003735 ... P60493 25562208
    121 4wt8:Da (3.4) BS02 rna ? GO:0003735 ... P60493 25562208
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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