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BioLiP
Download all results in tab-seperated text for 140 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4wsm:11 (3.3) BS01 rna ? GO:0002181 ... P60405 26037619
    2 4wsm:11 (3.3) BS02 rna ? GO:0002181 ... P60405 26037619
    3 4wsm:11 (3.3) BS03 MG ? GO:0002181 ... P60405 26037619
    4 4wsm:12 (3.3) BS01 rna ? GO:0003735 ... P80371 26037619
    5 4wsm:15 (3.3) BS01 rna ? GO:0003729 ... P60488 26037619
    6 4wsm:19 (3.3) BS01 rna ? GO:0002181 ... P60405 26037619
    7 4wsm:19 (3.3) BS02 rna ? GO:0002181 ... P60405 26037619
    8 4wsm:19 (3.3) BS03 MG ? GO:0002181 ... P60405 26037619
    9 4wsm:1A (3.3) BS01 rna ? GO:0000049 ... Q5SHN7 26037619
    10 4wsm:1E (3.3) BS01 rna ? GO:0003735 ... P80371 26037619
    11 4wsm:1I (3.3) BS01 rna ? GO:0000049 ... Q5SHN7 26037619
    12 4wsm:21 (3.3) BS01 rna ? GO:0003735 ... Q5SHN8 26037619
    13 4wsm:21 (3.3) BS02 MG ? GO:0003735 ... Q5SHN8 26037619
    14 4wsm:22 (3.3) BS01 rna ? GO:0003676 ... P80372 26037619
    15 4wsm:25 (3.3) BS01 rna ? GO:0003735 ... Q5SHP8 26037619
    16 4wsm:25 (3.3) BS02 rna ? GO:0003735 ... Q5SHP8 26037619
    17 4wsm:29 (3.3) BS01 rna ? GO:0003735 ... Q5SHN8 26037619
    18 4wsm:29 (3.3) BS02 MG ? GO:0003735 ... Q5SHN8 26037619
    19 4wsm:2A (3.3) BS01 rna ? GO:0003735 ... P80376 26037619
    20 4wsm:2A (3.3) BS02 MG ? GO:0003735 ... P80376 26037619
    21 4wsm:2E (3.3) BS01 rna ? GO:0003676 ... P80372 26037619
    22 4wsm:2I (3.3) BS01 rna ? GO:0003735 ... P80376 26037619
    23 4wsm:2I (3.3) BS02 MG ? GO:0003735 ... P80376 26037619
    24 4wsm:31 (3.3) BS01 rna ? GO:0003735 ... Q5SHN9 26037619
    25 4wsm:31 (3.3) BS02 MG ? GO:0003735 ... Q5SHN9 26037619
    26 4wsm:31 (3.3) BS03 MG ? GO:0003735 ... Q5SHN9 26037619
    27 4wsm:32 (3.3) BS01 rna ? GO:0003723 ... P80373 26037619
    28 4wsm:32 (3.3) BS02 ZN ? GO:0003723 ... P80373 26037619
    29 4wsm:35 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ7 26037619
    30 4wsm:39 (3.3) BS01 rna ? GO:0003735 ... Q5SHN9 26037619
    31 4wsm:39 (3.3) BS02 MG ? GO:0003735 ... Q5SHN9 26037619
    32 4wsm:3A (3.3) BS01 rna ? GO:0000049 ... Q5SHN3 26037619
    33 4wsm:3E (3.3) BS01 rna ? GO:0003723 ... P80373 26037619
    34 4wsm:3I (3.3) BS01 rna ? GO:0000049 ... Q5SHN3 26037619
    35 4wsm:41 (3.3) BS01 rna ? GO:0000049 ... Q5SHQ0 26037619
    36 4wsm:41 (3.3) BS02 rna ? GO:0000049 ... Q5SHQ0 26037619
    37 4wsm:41 (3.3) BS03 rna ? GO:0000049 ... Q5SHQ0 26037619
    38 4wsm:42 (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 26037619
    39 4wsm:45 (3.3) BS01 rna ? GO:0000049 ... P60489 26037619
    40 4wsm:45 (3.3) BS02 rna ? GO:0000049 ... P60489 26037619
    41 4wsm:45 (3.3) BS03 rna ? GO:0000049 ... P60489 26037619
    42 4wsm:45 (3.3) BS04 MG ? GO:0000049 ... P60489 26037619
    43 4wsm:49 (3.3) BS01 rna ? GO:0000049 ... Q5SHQ0 26037619
    44 4wsm:49 (3.3) BS02 rna ? GO:0000049 ... Q5SHQ0 26037619
    45 4wsm:49 (3.3) BS03 rna ? GO:0000049 ... Q5SHQ0 26037619
    46 4wsm:4A (3.3) BS01 rna ? GO:0000049 ... P80377 26037619
    47 4wsm:4E (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 26037619
    48 4wsm:4I (3.3) BS01 rna ? GO:0000049 ... P80377 26037619
    49 4wsm:4I (3.3) BS02 rna ? GO:0000049 ... P80377 26037619
    50 4wsm:51 (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    51 4wsm:52 (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 26037619
    52 4wsm:55 (3.3) BS01 rna ? GO:0003735 ... Q9Z9H5 26037619
    53 4wsm:58 (3.3) BS01 rna ? GO:0003729 ... P60488 26037619
    54 4wsm:59 (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    55 4wsm:5A (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    56 4wsm:5A (3.3) BS02 ZN N/A GO:0003735 ... N/A 26037619
    57 4wsm:5E (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 26037619
    58 4wsm:5E (3.3) BS02 MG ? GO:0003735 ... Q5SLP8 26037619
    59 4wsm:5I (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    60 4wsm:5I (3.3) BS02 ZN N/A GO:0003735 ... N/A 26037619
    61 4wsm:61 (3.3) BS01 rna ? GO:0003735 ... Q5SLQ1 26037619
    62 4wsm:62 (3.3) BS01 rna ? GO:0000028 ... P17291 26037619
    63 4wsm:65 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ4 26037619
    64 4wsm:65 (3.3) BS02 rna ? GO:0003735 ... Q5SHQ4 26037619
    65 4wsm:68 (3.3) BS01 rna ? GO:0003735 ... Q5SHP8 26037619
    66 4wsm:68 (3.3) BS02 rna ? GO:0003735 ... Q5SHP8 26037619
    67 4wsm:69 (3.3) BS01 rna ? GO:0003735 ... Q5SLQ1 26037619
    68 4wsm:69 (3.3) BS02 rna ? GO:0003735 ... Q5SLQ1 26037619
    69 4wsm:6A (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 26037619
    70 4wsm:6E (3.3) BS01 rna ? GO:0000028 ... P17291 26037619
    71 4wsm:6E (3.3) BS02 rna ? GO:0000028 ... P17291 26037619
    72 4wsm:6I (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 26037619
    73 4wsm:6I (3.3) BS02 rna ? GO:0003735 ... Q5SJ76 26037619
    74 4wsm:72 (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    75 4wsm:75 (3.3) BS01 rna ? GO:0003735 ... P60490 26037619
    76 4wsm:75 (3.3) BS02 rna ? GO:0003735 ... P60490 26037619
    77 4wsm:78 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ7 26037619
    78 4wsm:7A (3.3) BS01 rna ? GO:0003735 ... Q5SJH3 26037619
    79 4wsm:7E (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    80 4wsm:7I (3.3) BS01 rna ? GO:0003735 ... Q5SJH3 26037619
    81 4wsm:82 (3.3) BS01 rna ? GO:0000049 ... P80374 26037619
    82 4wsm:85 (3.3) BS01 rna ? GO:0000027 ... P60491 26037619
    83 4wsm:88 (3.3) BS01 rna ? GO:0000049 ... P60489 26037619
    84 4wsm:88 (3.3) BS02 rna ? GO:0000049 ... P60489 26037619
    85 4wsm:88 (3.3) BS03 rna ? GO:0000049 ... P60489 26037619
    86 4wsm:88 (3.3) BS04 MG ? GO:0000049 ... P60489 26037619
    87 4wsm:8A (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    88 4wsm:8E (3.3) BS01 rna ? GO:0000049 ... P80374 26037619
    89 4wsm:8E (3.3) BS02 rna ? GO:0000049 ... P80374 26037619
    90 4wsm:8I (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    91 4wsm:95 (3.3) BS01 rna ? GO:0003723 ... P60492 26037619
    92 4wsm:98 (3.3) BS01 rna ? GO:0003735 ... Q9Z9H5 26037619
    93 4wsm:9A (3.3) BS01 rna ? GO:0003735 ... Q5SLQ0 26037619
    94 4wsm:9I (3.3) BS01 rna ? GO:0003735 ... Q5SLQ0 26037619
    95 4wsm:A5 (3.3) BS01 rna ? GO:0003735 ... Q5SHP3 26037619
    96 4wsm:A5 (3.3) BS02 MG ? GO:0003735 ... Q5SHP3 26037619
    97 4wsm:A8 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ4 26037619
    98 4wsm:A8 (3.3) BS02 rna ? GO:0003735 ... Q5SHQ4 26037619
    99 4wsm:AA (3.3) BS01 rna ? GO:0000028 ... Q5SHP2 26037619
    100 4wsm:AI (3.3) BS01 rna ? GO:0000028 ... Q5SHP2 26037619
    101 4wsm:B5 (3.3) BS01 rna ? GO:0000027 ... Q5SHP0 26037619
    102 4wsm:B8 (3.3) BS01 rna ? GO:0003735 ... P60490 26037619
    103 4wsm:B8 (3.3) BS02 rna ? GO:0003735 ... P60490 26037619
    104 4wsm:BA (3.3) BS01 rna ? GO:0003723 ... P80380 26037619
    105 4wsm:BI (3.3) BS01 rna ? GO:0003723 ... P80380 26037619
    106 4wsm:C5 (3.3) BS01 rna ? GO:0003723 ... Q5SHP9 26037619
    107 4wsm:C8 (3.3) BS01 rna ? GO:0000027 ... P60491 26037619
    108 4wsm:D5 (3.3) BS01 rna ? GO:0003723 ... Q5SHZ1 26037619
    109 4wsm:D5 (3.3) BS02 rna ? GO:0003723 ... Q5SHZ1 26037619
    110 4wsm:D8 (3.3) BS01 rna ? GO:0003723 ... P60492 26037619
    111 4wsm:E5 (3.3) BS01 rna ? GO:0003735 ... P60493 26037619
    112 4wsm:E5 (3.3) BS02 rna ? GO:0003735 ... P60493 26037619
    113 4wsm:E5 (3.3) BS03 rna ? GO:0003735 ... P60493 26037619
    114 4wsm:E8 (3.3) BS01 rna ? GO:0003735 ... Q5SHP3 26037619
    115 4wsm:F5 (3.3) BS01 rna ? GO:0003735 ... P60494 26037619
    116 4wsm:F8 (3.3) BS01 rna ? GO:0000027 ... Q5SHP0 26037619
    117 4wsm:G5 (3.3) BS01 rna ? GO:0003735 ... Q5SHP6 26037619
    118 4wsm:G8 (3.3) BS01 rna ? GO:0003723 ... Q5SHP9 26037619
    119 4wsm:G8 (3.3) BS02 ZN ? GO:0003723 ... Q5SHP9 26037619
    120 4wsm:H5 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ6 26037619
    121 4wsm:H5 (3.3) BS02 rna ? GO:0003735 ... Q5SHQ6 26037619
    122 4wsm:H8 (3.3) BS01 rna ? GO:0003723 ... Q5SHZ1 26037619
    123 4wsm:H8 (3.3) BS02 rna ? GO:0003723 ... Q5SHZ1 26037619
    124 4wsm:I5 (3.3) BS01 rna ? GO:0003735 ... Q5SJE1 26037619
    125 4wsm:I8 (3.3) BS01 rna ? GO:0003735 ... P60493 26037619
    126 4wsm:I8 (3.3) BS02 rna ? GO:0003735 ... P60493 26037619
    127 4wsm:I8 (3.3) BS03 rna ? GO:0003735 ... P60493 26037619
    128 4wsm:J5 (3.3) BS01 rna ? GO:0003735 ... P80339 26037619
    129 4wsm:J8 (3.3) BS01 rna ? GO:0003735 ... P60494 26037619
    130 4wsm:J8 (3.3) BS02 rna ? GO:0003735 ... P60494 26037619
    131 4wsm:K8 (3.3) BS01 rna ? GO:0003735 ... Q5SHP6 26037619
    132 4wsm:L5 (3.3) BS01 rna ? GO:0003735 ... P80340 26037619
    133 4wsm:L8 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ6 26037619
    134 4wsm:L8 (3.3) BS02 rna ? GO:0003735 ... Q5SHQ6 26037619
    135 4wsm:M5 (3.3) BS01 rna ? GO:0003735 ... Q5SKU1 26037619
    136 4wsm:M8 (3.3) BS01 rna ? GO:0003735 ... Q5SJE1 26037619
    137 4wsm:M8 (3.3) BS02 rna ? GO:0003735 ... Q5SJE1 26037619
    138 4wsm:N8 (3.3) BS01 rna ? GO:0003735 ... P80339 26037619
    139 4wsm:P8 (3.3) BS01 rna ? GO:0003735 ... P80340 26037619
    140 4wsm:Q8 (3.3) BS01 rna ? GO:0003735 ... Q5SKU1 26037619
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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