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BioLiP
Download all results in tab-seperated text for 219 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4wpo:A0 (2.8) BS01 rna ? GO:0003735 ... P60493 25594181
    2 4wpo:A0 (2.8) BS02 rna ? GO:0003735 ... P60493 25594181
    3 4wpo:A1 (2.8) BS01 rna ? GO:0003735 ... P60494 25594181
    4 4wpo:A1 (2.8) BS02 rna ? GO:0003735 ... P60494 25594181
    5 4wpo:A2 (2.8) BS01 rna ? GO:0003735 ... Q5SHP6 25594181
    6 4wpo:A2 (2.8) BS02 MG ? GO:0003735 ... Q5SHP6 25594181
    7 4wpo:A3 (2.8) BS01 rna ? GO:0003735 ... Q5SHQ6 25594181
    8 4wpo:A3 (2.8) BS02 rna ? GO:0003735 ... Q5SHQ6 25594181
    9 4wpo:A3 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 25594181
    10 4wpo:A4 (2.8) BS01 rna ? GO:0003735 ... Q5SJE1 25594181
    11 4wpo:A4 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 25594181
    12 4wpo:A5 (2.8) BS01 rna ? GO:0003735 ... P80339 25594181
    13 4wpo:A5 (2.8) BS02 ZN ? GO:0003735 ... P80339 25594181
    14 4wpo:A6 (2.8) BS01 rna ? GO:0000049 ... P35871 25594181
    15 4wpo:A6 (2.8) BS02 MG ? GO:0000049 ... P35871 25594181
    16 4wpo:A6 (2.8) BS03 ZN ? GO:0000049 ... P35871 25594181
    17 4wpo:A7 (2.8) BS01 rna ? GO:0003735 ... P80340 25594181
    18 4wpo:A7 (2.8) BS02 MG ? GO:0003735 ... P80340 25594181
    19 4wpo:A7 (2.8) BS03 MG ? GO:0003735 ... P80340 25594181
    20 4wpo:A7 (2.8) BS04 MG ? GO:0003735 ... P80340 25594181
    21 4wpo:A7 (2.8) BS05 MG ? GO:0003735 ... P80340 25594181
    22 4wpo:A8 (2.8) BS01 rna ? GO:0003735 ... Q5SKU1 25594181
    23 4wpo:A8 (2.8) BS02 MG ? GO:0003735 ... Q5SKU1 25594181
    24 4wpo:A9 (2.8) BS01 rna ? GO:0003735 ... Q5SHR2 25594181
    25 4wpo:A9 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 25594181
    26 4wpo:AC (2.8) BS01 rna ? GO:0000049 ... Q5SLP7 25594181
    27 4wpo:AD (2.8) BS01 rna ? GO:0002181 ... P60405 25594181
    28 4wpo:AD (2.8) BS02 rna ? GO:0002181 ... P60405 25594181
    29 4wpo:AD (2.8) BS03 MG ? GO:0002181 ... P60405 25594181
    30 4wpo:AD (2.8) BS04 MG ? GO:0002181 ... P60405 25594181
    31 4wpo:AD (2.8) BS05 MG ? GO:0002181 ... P60405 25594181
    32 4wpo:AD (2.8) BS06 MG ? GO:0002181 ... P60405 25594181
    33 4wpo:AD (2.8) BS07 MG ? GO:0002181 ... P60405 25594181
    34 4wpo:AD (2.8) BS08 MG ? GO:0002181 ... P60405 25594181
    35 4wpo:AD (2.8) BS09 MG ? GO:0002181 ... P60405 25594181
    36 4wpo:AD (2.8) BS10 MG ? GO:0002181 ... P60405 25594181
    37 4wpo:AD (2.8) BS11 MG ? GO:0002181 ... P60405 25594181
    38 4wpo:AE (2.8) BS01 rna ? GO:0003735 ... Q5SHN8 25594181
    39 4wpo:AE (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 25594181
    40 4wpo:AF (2.8) BS01 rna ? GO:0003735 ... Q5SHN9 25594181
    41 4wpo:AF (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 25594181
    42 4wpo:AF (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 25594181
    43 4wpo:AF (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 25594181
    44 4wpo:AF (2.8) BS05 MG ? GO:0003735 ... Q5SHN9 25594181
    45 4wpo:AF (2.8) BS06 MG ? GO:0003735 ... Q5SHN9 25594181
    46 4wpo:AF (2.8) BS07 MG ? GO:0003735 ... Q5SHN9 25594181
    47 4wpo:AF (2.8) BS08 MG ? GO:0003735 ... Q5SHN9 25594181
    48 4wpo:AG (2.8) BS01 rna ? GO:0000049 ... Q5SHQ0 25594181
    49 4wpo:AG (2.8) BS02 rna ? GO:0000049 ... Q5SHQ0 25594181
    50 4wpo:AG (2.8) BS03 MG ? GO:0000049 ... Q5SHQ0 25594181
    51 4wpo:AG (2.8) BS04 MG ? GO:0000049 ... Q5SHQ0 25594181
    52 4wpo:AH (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    53 4wpo:AH (2.8) BS02 MG N/A GO:0003735 ... N/A 25594181
    54 4wpo:AK (2.8) BS01 rna ? GO:0003735 ... Q8VVE3 25594181
    55 4wpo:AL (2.8) BS01 rna ? GO:0003735 ... Q5SLP6 25594181
    56 4wpo:AN (2.8) BS01 rna ? GO:0003729 ... P60488 25594181
    57 4wpo:AN (2.8) BS02 MG ? GO:0003729 ... P60488 25594181
    58 4wpo:AO (2.8) BS01 rna ? GO:0003735 ... Q5SHP8 25594181
    59 4wpo:AO (2.8) BS02 rna ? GO:0003735 ... Q5SHP8 25594181
    60 4wpo:AP (2.8) BS01 rna ? GO:0003735 ... Q5SHQ7 25594181
    61 4wpo:AP (2.8) BS02 MG ? GO:0003735 ... Q5SHQ7 25594181
    62 4wpo:AP (2.8) BS03 MG ? GO:0003735 ... Q5SHQ7 25594181
    63 4wpo:AP (2.8) BS04 MG ? GO:0003735 ... Q5SHQ7 25594181
    64 4wpo:AQ (2.8) BS01 rna ? GO:0000049 ... P60489 25594181
    65 4wpo:AQ (2.8) BS02 rna ? GO:0000049 ... P60489 25594181
    66 4wpo:AQ (2.8) BS03 rna ? GO:0000049 ... P60489 25594181
    67 4wpo:AQ (2.8) BS04 MG ? GO:0000049 ... P60489 25594181
    68 4wpo:AR (2.8) BS01 rna ? GO:0003735 ... Q9Z9H5 25594181
    69 4wpo:AR (2.8) BS02 MG ? GO:0003735 ... Q9Z9H5 25594181
    70 4wpo:AR (2.8) BS03 MG ? GO:0003735 ... Q9Z9H5 25594181
    71 4wpo:AR (2.8) BS04 MG ? GO:0003735 ... Q9Z9H5 25594181
    72 4wpo:AS (2.8) BS01 rna ? GO:0003735 ... Q5SHQ4 25594181
    73 4wpo:AS (2.8) BS02 rna ? GO:0003735 ... Q5SHQ4 25594181
    74 4wpo:AT (2.8) BS01 rna ? GO:0003735 ... P60490 25594181
    75 4wpo:AT (2.8) BS02 rna ? GO:0003735 ... P60490 25594181
    76 4wpo:AU (2.8) BS01 rna ? GO:0000027 ... P60491 25594181
    77 4wpo:AU (2.8) BS02 MG ? GO:0000027 ... P60491 25594181
    78 4wpo:AU (2.8) BS03 MG ? GO:0000027 ... P60491 25594181
    79 4wpo:AU (2.8) BS04 MG ? GO:0000027 ... P60491 25594181
    80 4wpo:AU (2.8) BS05 MG ? GO:0000027 ... P60491 25594181
    81 4wpo:AU (2.8) BS06 MG ? GO:0000027 ... P60491 25594181
    82 4wpo:AV (2.8) BS01 rna ? GO:0003723 ... P60492 25594181
    83 4wpo:AV (2.8) BS02 MG ? GO:0003723 ... P60492 25594181
    84 4wpo:AV (2.8) BS03 MG ? GO:0003723 ... P60492 25594181
    85 4wpo:AV (2.8) BS04 MG ? GO:0003723 ... P60492 25594181
    86 4wpo:AV (2.8) BS05 MG ? GO:0003723 ... P60492 25594181
    87 4wpo:AW (2.8) BS01 rna ? GO:0003735 ... Q5SHP3 25594181
    88 4wpo:AW (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 25594181
    89 4wpo:AX (2.8) BS01 rna ? GO:0000027 ... Q5SHP0 25594181
    90 4wpo:AY (2.8) BS01 rna ? GO:0003723 ... Q5SHP9 25594181
    91 4wpo:AY (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 25594181
    92 4wpo:AZ (2.8) BS01 rna ? GO:0003723 ... Q5SHZ1 25594181
    93 4wpo:AZ (2.8) BS02 rna ? GO:0003723 ... Q5SHZ1 25594181
    94 4wpo:BB (2.8) BS01 rna ? GO:0003735 ... P80371 25594181
    95 4wpo:BC (2.8) BS01 rna ? GO:0003676 ... P80372 25594181
    96 4wpo:BD (2.8) BS01 rna ? GO:0003723 ... P80373 25594181
    97 4wpo:BD (2.8) BS02 SF4 ? GO:0003723 ... P80373 25594181
    98 4wpo:BE (2.8) BS01 rna ? GO:0003723 ... Q5SHQ5 25594181
    99 4wpo:BE (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 25594181
    100 4wpo:BF (2.8) BS01 rna ? GO:0003735 ... Q5SLP8 25594181
    101 4wpo:BG (2.8) BS01 rna ? GO:0000028 ... P17291 25594181
    102 4wpo:BG (2.8) BS02 rna ? GO:0000028 ... P17291 25594181
    103 4wpo:BH (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    104 4wpo:BI (2.8) BS01 rna ? GO:0000049 ... P80374 25594181
    105 4wpo:BJ (2.8) BS01 rna ? GO:0000049 ... Q5SHN7 25594181
    106 4wpo:BK (2.8) BS01 rna ? GO:0003735 ... P80376 25594181
    107 4wpo:BK (2.8) BS02 MG ? GO:0003735 ... P80376 25594181
    108 4wpo:BL (2.8) BS01 rna ? GO:0000049 ... Q5SHN3 25594181
    109 4wpo:BL (2.8) BS02 MG ? GO:0000049 ... Q5SHN3 25594181
    110 4wpo:BM (2.8) BS01 rna ? GO:0000049 ... P80377 25594181
    111 4wpo:BM (2.8) BS02 rna ? GO:0000049 ... P80377 25594181
    112 4wpo:BM (2.8) BS03 rna ? GO:0000049 ... P80377 25594181
    113 4wpo:BM (2.8) BS04 MG ? GO:0000049 ... P80377 25594181
    114 4wpo:BN (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    115 4wpo:BN (2.8) BS02 ZN N/A GO:0003735 ... N/A 25594181
    116 4wpo:BN (2.8) BS03 MG N/A GO:0003735 ... N/A 25594181
    117 4wpo:BO (2.8) BS01 rna ? GO:0003735 ... Q5SJ76 25594181
    118 4wpo:BO (2.8) BS02 rna ? GO:0003735 ... Q5SJ76 25594181
    119 4wpo:BP (2.8) BS01 rna ? GO:0003735 ... Q5SJH3 25594181
    120 4wpo:BQ (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    121 4wpo:BR (2.8) BS01 rna ? GO:0003735 ... Q5SLQ0 25594181
    122 4wpo:BS (2.8) BS01 rna ? GO:0000028 ... Q5SHP2 25594181
    123 4wpo:BT (2.8) BS01 rna ? GO:0003723 ... P80380 25594181
    124 4wpo:BT (2.8) BS02 MG ? GO:0003723 ... P80380 25594181
    125 4wpo:BZ (2.8) BS01 rna ? GO:0003735 ... Q5SHN5
    Q5SLQ1
    25594181
    126 4wpo:BZ (2.8) BS02 rna ? GO:0003735 ... Q5SHN5
    Q5SLQ1
    25594181
    127 4wpo:BZ (2.8) BS03 MG ? GO:0003735 ... Q5SHN5
    Q5SLQ1
    25594181
    128 4wpo:BZ (2.8) BS04 GDP ? GO:0003735 ... Q5SHN5
    Q5SLQ1
    25594181
    129 4wpo:C0 (2.8) BS01 rna ? GO:0003735 ... P60493 25594181
    130 4wpo:C1 (2.8) BS01 rna ? GO:0003735 ... P60494 25594181
    131 4wpo:C1 (2.8) BS02 rna ? GO:0003735 ... P60494 25594181
    132 4wpo:C2 (2.8) BS01 rna ? GO:0003735 ... Q5SHP6 25594181
    133 4wpo:C3 (2.8) BS01 rna ? GO:0003735 ... Q5SHQ6 25594181
    134 4wpo:C3 (2.8) BS02 rna ? GO:0003735 ... Q5SHQ6 25594181
    135 4wpo:C3 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 25594181
    136 4wpo:C4 (2.8) BS01 rna ? GO:0003735 ... Q5SJE1 25594181
    137 4wpo:C4 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 25594181
    138 4wpo:C5 (2.8) BS01 rna ? GO:0003735 ... P80339 25594181
    139 4wpo:C5 (2.8) BS02 ZN ? GO:0003735 ... P80339 25594181
    140 4wpo:C6 (2.8) BS01 rna ? GO:0000049 ... P35871 25594181
    141 4wpo:C6 (2.8) BS02 ZN ? GO:0000049 ... P35871 25594181
    142 4wpo:C7 (2.8) BS01 rna ? GO:0003735 ... P80340 25594181
    143 4wpo:C7 (2.8) BS02 MG ? GO:0003735 ... P80340 25594181
    144 4wpo:C8 (2.8) BS01 rna ? GO:0003735 ... Q5SKU1 25594181
    145 4wpo:C9 (2.8) BS01 rna ? GO:0003735 ... Q5SHR2 25594181
    146 4wpo:C9 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 25594181
    147 4wpo:CC (2.8) BS01 rna ? GO:0000049 ... Q5SLP7 25594181
    148 4wpo:CD (2.8) BS01 rna ? GO:0002181 ... P60405 25594181
    149 4wpo:CD (2.8) BS02 rna ? GO:0002181 ... P60405 25594181
    150 4wpo:CD (2.8) BS03 MG ? GO:0002181 ... P60405 25594181
    151 4wpo:CE (2.8) BS01 rna ? GO:0003735 ... Q5SHN8 25594181
    152 4wpo:CE (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 25594181
    153 4wpo:CE (2.8) BS03 MG ? GO:0003735 ... Q5SHN8 25594181
    154 4wpo:CF (2.8) BS01 rna ? GO:0003735 ... Q5SHN9 25594181
    155 4wpo:CF (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 25594181
    156 4wpo:CF (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 25594181
    157 4wpo:CG (2.8) BS01 rna ? GO:0000049 ... Q5SHQ0 25594181
    158 4wpo:CG (2.8) BS02 rna ? GO:0000049 ... Q5SHQ0 25594181
    159 4wpo:CG (2.8) BS03 MG ? GO:0000049 ... Q5SHQ0 25594181
    160 4wpo:CH (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    161 4wpo:CK (2.8) BS01 rna ? GO:0003735 ... Q8VVE3 25594181
    162 4wpo:CL (2.8) BS01 rna ? GO:0003735 ... Q5SLP6 25594181
    163 4wpo:CN (2.8) BS01 rna ? GO:0003729 ... P60488 25594181
    164 4wpo:CO (2.8) BS01 rna ? GO:0003735 ... Q5SHP8 25594181
    165 4wpo:CO (2.8) BS02 rna ? GO:0003735 ... Q5SHP8 25594181
    166 4wpo:CP (2.8) BS01 rna ? GO:0003735 ... Q5SHQ7 25594181
    167 4wpo:CP (2.8) BS02 MG ? GO:0003735 ... Q5SHQ7 25594181
    168 4wpo:CQ (2.8) BS01 rna ? GO:0000049 ... P60489 25594181
    169 4wpo:CQ (2.8) BS02 rna ? GO:0000049 ... P60489 25594181
    170 4wpo:CQ (2.8) BS03 rna ? GO:0000049 ... P60489 25594181
    171 4wpo:CQ (2.8) BS04 MG ? GO:0000049 ... P60489 25594181
    172 4wpo:CR (2.8) BS01 rna ? GO:0003735 ... Q9Z9H5 25594181
    173 4wpo:CS (2.8) BS01 rna ? GO:0003735 ... Q5SHQ4 25594181
    174 4wpo:CS (2.8) BS02 rna ? GO:0003735 ... Q5SHQ4 25594181
    175 4wpo:CT (2.8) BS01 rna ? GO:0003735 ... P60490 25594181
    176 4wpo:CT (2.8) BS02 rna ? GO:0003735 ... P60490 25594181
    177 4wpo:CU (2.8) BS01 rna ? GO:0000027 ... P60491 25594181
    178 4wpo:CU (2.8) BS02 MG ? GO:0000027 ... P60491 25594181
    179 4wpo:CU (2.8) BS03 MG ? GO:0000027 ... P60491 25594181
    180 4wpo:CV (2.8) BS01 rna ? GO:0003723 ... P60492 25594181
    181 4wpo:CV (2.8) BS02 MG ? GO:0003723 ... P60492 25594181
    182 4wpo:CV (2.8) BS03 MG ? GO:0003723 ... P60492 25594181
    183 4wpo:CW (2.8) BS01 rna ? GO:0003735 ... Q5SHP3 25594181
    184 4wpo:CW (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 25594181
    185 4wpo:CX (2.8) BS01 rna ? GO:0000027 ... Q5SHP0 25594181
    186 4wpo:CY (2.8) BS01 rna ? GO:0003723 ... Q5SHP9 25594181
    187 4wpo:CY (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 25594181
    188 4wpo:CZ (2.8) BS01 rna ? GO:0003723 ... Q5SHZ1 25594181
    189 4wpo:CZ (2.8) BS02 rna ? GO:0003723 ... Q5SHZ1 25594181
    190 4wpo:DB (2.8) BS01 rna ? GO:0003735 ... P80371 25594181
    191 4wpo:DC (2.8) BS01 rna ? GO:0003676 ... P80372 25594181
    192 4wpo:DD (2.8) BS01 rna ? GO:0003723 ... P80373 25594181
    193 4wpo:DD (2.8) BS02 SF4 ? GO:0003723 ... P80373 25594181
    194 4wpo:DE (2.8) BS01 rna ? GO:0003723 ... Q5SHQ5 25594181
    195 4wpo:DE (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 25594181
    196 4wpo:DE (2.8) BS03 MG ? GO:0003723 ... Q5SHQ5 25594181
    197 4wpo:DF (2.8) BS01 rna ? GO:0003735 ... Q5SLP8 25594181
    198 4wpo:DF (2.8) BS02 MG ? GO:0003735 ... Q5SLP8 25594181
    199 4wpo:DG (2.8) BS01 rna ? GO:0000028 ... P17291 25594181
    200 4wpo:DG (2.8) BS02 rna ? GO:0000028 ... P17291 25594181

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218