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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 245 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4w2i:AB (2.7) BS01 rna ? GO:0003735 ... P80371 25306922
    2 4w2i:AC (2.7) BS01 rna ? GO:0003676 ... P80372 25306922
    3 4w2i:AD (2.7) BS01 rna ? GO:0003723 ... P80373 25306922
    4 4w2i:AD (2.7) BS02 SF4 ? GO:0003723 ... P80373 25306922
    5 4w2i:AE (2.7) BS01 rna ? GO:0003723 ... Q5SHQ5 25306922
    6 4w2i:AE (2.7) BS02 MG ? GO:0003723 ... Q5SHQ5 25306922
    7 4w2i:AE (2.7) BS03 MG ? GO:0003723 ... Q5SHQ5 25306922
    8 4w2i:AF (2.7) BS01 rna ? GO:0003735 ... Q5SLP8 25306922
    9 4w2i:AG (2.7) BS01 rna ? GO:0000028 ... P17291 25306922
    10 4w2i:AG (2.7) BS02 rna ? GO:0000028 ... P17291 25306922
    11 4w2i:AH (2.7) BS01 rna N/A GO:0003735 ... N/A 25306922
    12 4w2i:AI (2.7) BS01 rna ? GO:0000049 ... P80374 25306922
    13 4w2i:AJ (2.7) BS01 rna ? GO:0000049 ... Q5SHN7 25306922
    14 4w2i:AK (2.7) BS01 rna ? GO:0003735 ... P80376 25306922
    15 4w2i:AK (2.7) BS02 MG ? GO:0003735 ... P80376 25306922
    16 4w2i:AL (2.7) BS01 rna ? GO:0000049 ... Q5SHN3 25306922
    17 4w2i:AL (2.7) BS02 MG ? GO:0000049 ... Q5SHN3 25306922
    18 4w2i:AM (2.7) BS01 rna ? GO:0000049 ... P80377 25306922
    19 4w2i:AM (2.7) BS02 rna ? GO:0000049 ... P80377 25306922
    20 4w2i:AM (2.7) BS03 rna ? GO:0000049 ... P80377 25306922
    21 4w2i:AM (2.7) BS04 MG ? GO:0000049 ... P80377 25306922
    22 4w2i:AN (2.7) BS01 rna N/A GO:0003735 ... N/A 25306922
    23 4w2i:AN (2.7) BS02 ZN N/A GO:0003735 ... N/A 25306922
    24 4w2i:AO (2.7) BS01 rna ? GO:0003735 ... Q5SJ76 25306922
    25 4w2i:AO (2.7) BS02 rna ? GO:0003735 ... Q5SJ76 25306922
    26 4w2i:AP (2.7) BS01 rna ? GO:0003735 ... Q5SJH3 25306922
    27 4w2i:AQ (2.7) BS01 rna N/A GO:0003735 ... N/A 25306922
    28 4w2i:AR (2.7) BS01 rna ? GO:0003735 ... Q5SLQ0 25306922
    29 4w2i:AS (2.7) BS01 rna ? GO:0000028 ... Q5SHP2 25306922
    30 4w2i:AT (2.7) BS01 rna ? GO:0003723 ... P80380 25306922
    31 4w2i:B0 (2.7) BS01 rna ? GO:0003735 ... P60493 25306922
    32 4w2i:B0 (2.7) BS02 rna ? GO:0003735 ... P60493 25306922
    33 4w2i:B0 (2.7) BS03 MG ? GO:0003735 ... P60493 25306922
    34 4w2i:B1 (2.7) BS01 rna ? GO:0003735 ... P60494 25306922
    35 4w2i:B1 (2.7) BS02 rna ? GO:0003735 ... P60494 25306922
    36 4w2i:B1 (2.7) BS03 MG ? GO:0003735 ... P60494 25306922
    37 4w2i:B2 (2.7) BS01 rna ? GO:0003735 ... Q5SHP6 25306922
    38 4w2i:B3 (2.7) BS01 rna ? GO:0003735 ... Q5SHQ6 25306922
    39 4w2i:B3 (2.7) BS02 rna ? GO:0003735 ... Q5SHQ6 25306922
    40 4w2i:B3 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 25306922
    41 4w2i:B4 (2.7) BS01 rna ? GO:0003735 ... Q5SJE1 25306922
    42 4w2i:B4 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 25306922
    43 4w2i:B5 (2.7) BS01 rna ? GO:0003735 ... P80339 25306922
    44 4w2i:B5 (2.7) BS02 MG ? GO:0003735 ... P80339 25306922
    45 4w2i:B5 (2.7) BS03 MG ? GO:0003735 ... P80339 25306922
    46 4w2i:B5 (2.7) BS04 ZN ? GO:0003735 ... P80339 25306922
    47 4w2i:B6 (2.7) BS01 rna ? GO:0000049 ... P35871 25306922
    48 4w2i:B6 (2.7) BS02 ZN ? GO:0000049 ... P35871 25306922
    49 4w2i:B7 (2.7) BS01 rna ? GO:0003735 ... P80340 25306922
    50 4w2i:B7 (2.7) BS02 MG ? GO:0003735 ... P80340 25306922
    51 4w2i:B7 (2.7) BS03 MG ? GO:0003735 ... P80340 25306922
    52 4w2i:B7 (2.7) BS04 MG ? GO:0003735 ... P80340 25306922
    53 4w2i:B8 (2.7) BS01 rna ? GO:0003735 ... Q5SKU1 25306922
    54 4w2i:B8 (2.7) BS02 MG ? GO:0003735 ... Q5SKU1 25306922
    55 4w2i:B9 (2.7) BS01 rna ? GO:0003735 ... Q5SHR2 25306922
    56 4w2i:B9 (2.7) BS02 ZN ? GO:0003735 ... Q5SHR2 25306922
    57 4w2i:BD (2.7) BS01 rna ? GO:0002181 ... P60405 25306922
    58 4w2i:BD (2.7) BS02 rna ? GO:0002181 ... P60405 25306922
    59 4w2i:BD (2.7) BS03 MG ? GO:0002181 ... P60405 25306922
    60 4w2i:BD (2.7) BS04 MG ? GO:0002181 ... P60405 25306922
    61 4w2i:BD (2.7) BS05 MG ? GO:0002181 ... P60405 25306922
    62 4w2i:BD (2.7) BS06 MG ? GO:0002181 ... P60405 25306922
    63 4w2i:BD (2.7) BS07 MG ? GO:0002181 ... P60405 25306922
    64 4w2i:BD (2.7) BS08 MG ? GO:0002181 ... P60405 25306922
    65 4w2i:BD (2.7) BS09 MG ? GO:0002181 ... P60405 25306922
    66 4w2i:BD (2.7) BS10 MG ? GO:0002181 ... P60405 25306922
    67 4w2i:BD (2.7) BS11 MG ? GO:0002181 ... P60405 25306922
    68 4w2i:BD (2.7) BS12 MG ? GO:0002181 ... P60405 25306922
    69 4w2i:BD (2.7) BS13 MG ? GO:0002181 ... P60405 25306922
    70 4w2i:BE (2.7) BS01 rna ? GO:0003735 ... Q5SHN8 25306922
    71 4w2i:BE (2.7) BS02 MG ? GO:0003735 ... Q5SHN8 25306922
    72 4w2i:BE (2.7) BS03 MG ? GO:0003735 ... Q5SHN8 25306922
    73 4w2i:BE (2.7) BS04 MG ? GO:0003735 ... Q5SHN8 25306922
    74 4w2i:BF (2.7) BS01 rna ? GO:0003735 ... Q5SHN9 25306922
    75 4w2i:BF (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 25306922
    76 4w2i:BF (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 25306922
    77 4w2i:BF (2.7) BS04 MG ? GO:0003735 ... Q5SHN9 25306922
    78 4w2i:BF (2.7) BS05 MG ? GO:0003735 ... Q5SHN9 25306922
    79 4w2i:BF (2.7) BS06 MG ? GO:0003735 ... Q5SHN9 25306922
    80 4w2i:BF (2.7) BS07 MG ? GO:0003735 ... Q5SHN9 25306922
    81 4w2i:BF (2.7) BS08 MG ? GO:0003735 ... Q5SHN9 25306922
    82 4w2i:BF (2.7) BS09 MG ? GO:0003735 ... Q5SHN9 25306922
    83 4w2i:BG (2.7) BS01 rna ? GO:0000049 ... Q5SHQ0 25306922
    84 4w2i:BG (2.7) BS02 rna ? GO:0000049 ... Q5SHQ0 25306922
    85 4w2i:BG (2.7) BS03 rna ? GO:0000049 ... Q5SHQ0 25306922
    86 4w2i:BG (2.7) BS04 MG ? GO:0000049 ... Q5SHQ0 25306922
    87 4w2i:BH (2.7) BS01 rna N/A GO:0003735 ... N/A 25306922
    88 4w2i:BI (2.7) BS01 rna ? GO:0003735 ... Q5SLQ1 25306922
    89 4w2i:BN (2.7) BS01 rna ? GO:0003729 ... P60488 25306922
    90 4w2i:BN (2.7) BS02 MG ? GO:0003729 ... P60488 25306922
    91 4w2i:BN (2.7) BS03 MG ? GO:0003729 ... P60488 25306922
    92 4w2i:BN (2.7) BS04 MG ? GO:0003729 ... P60488 25306922
    93 4w2i:BO (2.7) BS01 rna ? GO:0003735 ... Q5SHP8 25306922
    94 4w2i:BO (2.7) BS02 rna ? GO:0003735 ... Q5SHP8 25306922
    95 4w2i:BP (2.7) BS01 rna ? GO:0003735 ... Q5SHQ7 25306922
    96 4w2i:BP (2.7) BS02 MG ? GO:0003735 ... Q5SHQ7 25306922
    97 4w2i:BP (2.7) BS03 MG ? GO:0003735 ... Q5SHQ7 25306922
    98 4w2i:BQ (2.7) BS01 rna ? GO:0000049 ... P60489 25306922
    99 4w2i:BQ (2.7) BS02 rna ? GO:0000049 ... P60489 25306922
    100 4w2i:BQ (2.7) BS03 rna ? GO:0000049 ... P60489 25306922
    101 4w2i:BQ (2.7) BS04 MG ? GO:0000049 ... P60489 25306922
    102 4w2i:BQ (2.7) BS05 MG ? GO:0000049 ... P60489 25306922
    103 4w2i:BQ (2.7) BS06 MG ? GO:0000049 ... P60489 25306922
    104 4w2i:BR (2.7) BS01 rna ? GO:0003735 ... Q9Z9H5 25306922
    105 4w2i:BR (2.7) BS02 MG ? GO:0003735 ... Q9Z9H5 25306922
    106 4w2i:BS (2.7) BS01 rna ? GO:0003735 ... Q5SHQ4 25306922
    107 4w2i:BS (2.7) BS02 rna ? GO:0003735 ... Q5SHQ4 25306922
    108 4w2i:BT (2.7) BS01 rna ? GO:0003735 ... P60490 25306922
    109 4w2i:BT (2.7) BS02 rna ? GO:0003735 ... P60490 25306922
    110 4w2i:BU (2.7) BS01 rna ? GO:0000027 ... P60491 25306922
    111 4w2i:BU (2.7) BS02 MG ? GO:0000027 ... P60491 25306922
    112 4w2i:BU (2.7) BS03 MG ? GO:0000027 ... P60491 25306922
    113 4w2i:BU (2.7) BS04 MG ? GO:0000027 ... P60491 25306922
    114 4w2i:BU (2.7) BS05 MG ? GO:0000027 ... P60491 25306922
    115 4w2i:BU (2.7) BS06 MG ? GO:0000027 ... P60491 25306922
    116 4w2i:BU (2.7) BS07 MG ? GO:0000027 ... P60491 25306922
    117 4w2i:BU (2.7) BS08 MG ? GO:0000027 ... P60491 25306922
    118 4w2i:BU (2.7) BS09 MG ? GO:0000027 ... P60491 25306922
    119 4w2i:BV (2.7) BS01 rna ? GO:0003723 ... P60492 25306922
    120 4w2i:BV (2.7) BS02 MG ? GO:0003723 ... P60492 25306922
    121 4w2i:BV (2.7) BS03 MG ? GO:0003723 ... P60492 25306922
    122 4w2i:BV (2.7) BS04 MG ? GO:0003723 ... P60492 25306922
    123 4w2i:BV (2.7) BS05 MG ? GO:0003723 ... P60492 25306922
    124 4w2i:BV (2.7) BS06 MG ? GO:0003723 ... P60492 25306922
    125 4w2i:BV (2.7) BS07 MG ? GO:0003723 ... P60492 25306922
    126 4w2i:BW (2.7) BS01 rna ? GO:0003735 ... Q5SHP3 25306922
    127 4w2i:BW (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 25306922
    128 4w2i:BW (2.7) BS03 MG ? GO:0003735 ... Q5SHP3 25306922
    129 4w2i:BX (2.7) BS01 rna ? GO:0000027 ... Q5SHP0 25306922
    130 4w2i:BX (2.7) BS02 MG ? GO:0000027 ... Q5SHP0 25306922
    131 4w2i:BX (2.7) BS03 MG ? GO:0000027 ... Q5SHP0 25306922
    132 4w2i:BY (2.7) BS01 rna ? GO:0003723 ... Q5SHP9 25306922
    133 4w2i:BY (2.7) BS02 ZN ? GO:0003723 ... Q5SHP9 25306922
    134 4w2i:BZ (2.7) BS01 rna ? GO:0003723 ... Q5SHZ1 25306922
    135 4w2i:BZ (2.7) BS02 rna ? GO:0003723 ... Q5SHZ1 25306922
    136 4w2i:CB (2.7) BS01 rna ? GO:0003735 ... P80371 25306922
    137 4w2i:CC (2.7) BS01 rna ? GO:0003676 ... P80372 25306922
    138 4w2i:CD (2.7) BS01 rna ? GO:0003723 ... P80373 25306922
    139 4w2i:CD (2.7) BS02 SF4 ? GO:0003723 ... P80373 25306922
    140 4w2i:CE (2.7) BS01 rna ? GO:0003723 ... Q5SHQ5 25306922
    141 4w2i:CE (2.7) BS02 MG ? GO:0003723 ... Q5SHQ5 25306922
    142 4w2i:CE (2.7) BS03 MG ? GO:0003723 ... Q5SHQ5 25306922
    143 4w2i:CF (2.7) BS01 rna ? GO:0003735 ... Q5SLP8 25306922
    144 4w2i:CG (2.7) BS01 rna ? GO:0000028 ... P17291 25306922
    145 4w2i:CG (2.7) BS02 rna ? GO:0000028 ... P17291 25306922
    146 4w2i:CH (2.7) BS01 rna N/A GO:0003735 ... N/A 25306922
    147 4w2i:CI (2.7) BS01 rna ? GO:0000049 ... P80374 25306922
    148 4w2i:CI (2.7) BS02 rna ? GO:0000049 ... P80374 25306922
    149 4w2i:CJ (2.7) BS01 rna ? GO:0000049 ... Q5SHN7 25306922
    150 4w2i:CJ (2.7) BS02 MG ? GO:0000049 ... Q5SHN7 25306922
    151 4w2i:CK (2.7) BS01 rna ? GO:0003735 ... P80376 25306922
    152 4w2i:CK (2.7) BS02 MG ? GO:0003735 ... P80376 25306922
    153 4w2i:CL (2.7) BS01 rna ? GO:0000049 ... Q5SHN3 25306922
    154 4w2i:CL (2.7) BS02 rna ? GO:0000049 ... Q5SHN3 25306922
    155 4w2i:CL (2.7) BS03 MG ? GO:0000049 ... Q5SHN3 25306922
    156 4w2i:CM (2.7) BS01 rna ? GO:0000049 ... P80377 25306922
    157 4w2i:CM (2.7) BS02 rna ? GO:0000049 ... P80377 25306922
    158 4w2i:CN (2.7) BS01 rna N/A GO:0003735 ... N/A 25306922
    159 4w2i:CN (2.7) BS02 ZN N/A GO:0003735 ... N/A 25306922
    160 4w2i:CO (2.7) BS01 rna ? GO:0003735 ... Q5SJ76 25306922
    161 4w2i:CO (2.7) BS02 rna ? GO:0003735 ... Q5SJ76 25306922
    162 4w2i:CP (2.7) BS01 rna ? GO:0003735 ... Q5SJH3 25306922
    163 4w2i:CQ (2.7) BS01 rna N/A GO:0003735 ... N/A 25306922
    164 4w2i:CR (2.7) BS01 rna ? GO:0003735 ... Q5SLQ0 25306922
    165 4w2i:CS (2.7) BS01 rna ? GO:0000028 ... Q5SHP2 25306922
    166 4w2i:CT (2.7) BS01 rna ? GO:0003723 ... P80380 25306922
    167 4w2i:CT (2.7) BS02 MG ? GO:0003723 ... P80380 25306922
    168 4w2i:D0 (2.7) BS01 rna ? GO:0003735 ... P60493 25306922
    169 4w2i:D0 (2.7) BS02 rna ? GO:0003735 ... P60493 25306922
    170 4w2i:D0 (2.7) BS03 rna ? GO:0003735 ... P60493 25306922
    171 4w2i:D1 (2.7) BS01 rna ? GO:0003735 ... P60494 25306922
    172 4w2i:D1 (2.7) BS02 rna ? GO:0003735 ... P60494 25306922
    173 4w2i:D2 (2.7) BS01 rna ? GO:0003735 ... Q5SHP6 25306922
    174 4w2i:D3 (2.7) BS01 rna ? GO:0003735 ... Q5SHQ6 25306922
    175 4w2i:D3 (2.7) BS02 rna ? GO:0003735 ... Q5SHQ6 25306922
    176 4w2i:D3 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 25306922
    177 4w2i:D4 (2.7) BS01 rna ? GO:0003735 ... Q5SJE1 25306922
    178 4w2i:D4 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 25306922
    179 4w2i:D5 (2.7) BS01 rna ? GO:0003735 ... P80339 25306922
    180 4w2i:D5 (2.7) BS02 ZN ? GO:0003735 ... P80339 25306922
    181 4w2i:D6 (2.7) BS01 rna ? GO:0000049 ... P35871 25306922
    182 4w2i:D6 (2.7) BS02 ZN ? GO:0000049 ... P35871 25306922
    183 4w2i:D7 (2.7) BS01 rna ? GO:0003735 ... P80340 25306922
    184 4w2i:D7 (2.7) BS02 MG ? GO:0003735 ... P80340 25306922
    185 4w2i:D7 (2.7) BS03 MG ? GO:0003735 ... P80340 25306922
    186 4w2i:D8 (2.7) BS01 rna ? GO:0003735 ... Q5SKU1 25306922
    187 4w2i:D9 (2.7) BS01 rna ? GO:0003735 ... Q5SHR2 25306922
    188 4w2i:D9 (2.7) BS02 ZN ? GO:0003735 ... Q5SHR2 25306922
    189 4w2i:DD (2.7) BS01 rna ? GO:0002181 ... P60405 25306922
    190 4w2i:DD (2.7) BS02 rna ? GO:0002181 ... P60405 25306922
    191 4w2i:DD (2.7) BS03 MG ? GO:0002181 ... P60405 25306922
    192 4w2i:DD (2.7) BS04 MG ? GO:0002181 ... P60405 25306922
    193 4w2i:DD (2.7) BS05 MG ? GO:0002181 ... P60405 25306922
    194 4w2i:DD (2.7) BS06 MG ? GO:0002181 ... P60405 25306922
    195 4w2i:DD (2.7) BS07 MG ? GO:0002181 ... P60405 25306922
    196 4w2i:DD (2.7) BS08 MG ? GO:0002181 ... P60405 25306922
    197 4w2i:DD (2.7) BS09 MG ? GO:0002181 ... P60405 25306922
    198 4w2i:DD (2.7) BS10 MG ? GO:0002181 ... P60405 25306922
    199 4w2i:DE (2.7) BS01 rna ? GO:0003735 ... Q5SHN8 25306922
    200 4w2i:DE (2.7) BS02 MG ? GO:0003735 ... Q5SHN8 25306922
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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