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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 245 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4w2g:AB (2.55) BS01 rna ? GO:0003735 ... P80371 25306919
    2 4w2g:AC (2.55) BS01 rna ? GO:0003676 ... P80372 25306919
    3 4w2g:AD (2.55) BS01 rna ? GO:0003723 ... P80373 25306919
    4 4w2g:AD (2.55) BS02 SF4 ? GO:0003723 ... P80373 25306919
    5 4w2g:AE (2.55) BS01 rna ? GO:0003723 ... Q5SHQ5 25306919
    6 4w2g:AE (2.55) BS02 MG ? GO:0003723 ... Q5SHQ5 25306919
    7 4w2g:AE (2.55) BS03 MG ? GO:0003723 ... Q5SHQ5 25306919
    8 4w2g:AF (2.55) BS01 rna ? GO:0003735 ... Q5SLP8 25306919
    9 4w2g:AG (2.55) BS01 rna ? GO:0000028 ... P17291 25306919
    10 4w2g:AG (2.55) BS02 rna ? GO:0000028 ... P17291 25306919
    11 4w2g:AH (2.55) BS01 rna N/A GO:0003735 ... N/A 25306919
    12 4w2g:AI (2.55) BS01 rna ? GO:0000049 ... P80374 25306919
    13 4w2g:AI (2.55) BS02 rna ? GO:0000049 ... P80374 25306919
    14 4w2g:AJ (2.55) BS01 rna ? GO:0000049 ... Q5SHN7 25306919
    15 4w2g:AK (2.55) BS01 rna ? GO:0003735 ... P80376 25306919
    16 4w2g:AK (2.55) BS02 MG ? GO:0003735 ... P80376 25306919
    17 4w2g:AL (2.55) BS01 rna ? GO:0000049 ... Q5SHN3 25306919
    18 4w2g:AL (2.55) BS02 MG ? GO:0000049 ... Q5SHN3 25306919
    19 4w2g:AM (2.55) BS01 rna ? GO:0000049 ... P80377 25306919
    20 4w2g:AM (2.55) BS02 rna ? GO:0000049 ... P80377 25306919
    21 4w2g:AM (2.55) BS03 rna ? GO:0000049 ... P80377 25306919
    22 4w2g:AM (2.55) BS04 rna ? GO:0000049 ... P80377 25306919
    23 4w2g:AM (2.55) BS05 MG ? GO:0000049 ... P80377 25306919
    24 4w2g:AN (2.55) BS01 rna N/A GO:0003735 ... N/A 25306919
    25 4w2g:AN (2.55) BS02 ZN N/A GO:0003735 ... N/A 25306919
    26 4w2g:AO (2.55) BS01 rna ? GO:0003735 ... Q5SJ76 25306919
    27 4w2g:AO (2.55) BS02 rna ? GO:0003735 ... Q5SJ76 25306919
    28 4w2g:AP (2.55) BS01 rna ? GO:0003735 ... Q5SJH3 25306919
    29 4w2g:AQ (2.55) BS01 rna N/A GO:0003735 ... N/A 25306919
    30 4w2g:AR (2.55) BS01 rna ? GO:0003735 ... Q5SLQ0 25306919
    31 4w2g:AS (2.55) BS01 rna ? GO:0000028 ... Q5SHP2 25306919
    32 4w2g:AS (2.55) BS02 MG ? GO:0000028 ... Q5SHP2 25306919
    33 4w2g:AT (2.55) BS01 rna ? GO:0003723 ... P80380 25306919
    34 4w2g:B0 (2.55) BS01 rna ? GO:0003735 ... P60493 25306919
    35 4w2g:B0 (2.55) BS02 rna ? GO:0003735 ... P60493 25306919
    36 4w2g:B0 (2.55) BS03 MG ? GO:0003735 ... P60493 25306919
    37 4w2g:B1 (2.55) BS01 rna ? GO:0003735 ... P60494 25306919
    38 4w2g:B1 (2.55) BS02 rna ? GO:0003735 ... P60494 25306919
    39 4w2g:B1 (2.55) BS03 MG ? GO:0003735 ... P60494 25306919
    40 4w2g:B2 (2.55) BS01 rna ? GO:0003735 ... Q5SHP6 25306919
    41 4w2g:B3 (2.55) BS01 rna ? GO:0003735 ... Q5SHQ6 25306919
    42 4w2g:B3 (2.55) BS02 rna ? GO:0003735 ... Q5SHQ6 25306919
    43 4w2g:B4 (2.55) BS01 rna ? GO:0003735 ... Q5SJE1 25306919
    44 4w2g:B4 (2.55) BS02 ZN ? GO:0003735 ... Q5SJE1 25306919
    45 4w2g:B5 (2.55) BS01 rna ? GO:0003735 ... P80339 25306919
    46 4w2g:B5 (2.55) BS02 MG ? GO:0003735 ... P80339 25306919
    47 4w2g:B5 (2.55) BS03 ZN ? GO:0003735 ... P80339 25306919
    48 4w2g:B6 (2.55) BS01 rna ? GO:0000049 ... P35871 25306919
    49 4w2g:B6 (2.55) BS02 MG ? GO:0000049 ... P35871 25306919
    50 4w2g:B6 (2.55) BS03 MG ? GO:0000049 ... P35871 25306919
    51 4w2g:B6 (2.55) BS04 ZN ? GO:0000049 ... P35871 25306919
    52 4w2g:B7 (2.55) BS01 rna ? GO:0003735 ... P80340 25306919
    53 4w2g:B7 (2.55) BS02 MG ? GO:0003735 ... P80340 25306919
    54 4w2g:B7 (2.55) BS03 MG ? GO:0003735 ... P80340 25306919
    55 4w2g:B8 (2.55) BS01 rna ? GO:0003735 ... Q5SKU1 25306919
    56 4w2g:B8 (2.55) BS02 MG ? GO:0003735 ... Q5SKU1 25306919
    57 4w2g:B9 (2.55) BS01 rna ? GO:0003735 ... Q5SHR2 25306919
    58 4w2g:B9 (2.55) BS02 ZN ? GO:0003735 ... Q5SHR2 25306919
    59 4w2g:BD (2.55) BS01 rna ? GO:0002181 ... P60405 25306919
    60 4w2g:BD (2.55) BS02 rna ? GO:0002181 ... P60405 25306919
    61 4w2g:BD (2.55) BS03 MG ? GO:0002181 ... P60405 25306919
    62 4w2g:BD (2.55) BS04 MG ? GO:0002181 ... P60405 25306919
    63 4w2g:BD (2.55) BS05 MG ? GO:0002181 ... P60405 25306919
    64 4w2g:BD (2.55) BS06 MG ? GO:0002181 ... P60405 25306919
    65 4w2g:BD (2.55) BS07 MG ? GO:0002181 ... P60405 25306919
    66 4w2g:BD (2.55) BS08 MG ? GO:0002181 ... P60405 25306919
    67 4w2g:BD (2.55) BS09 MG ? GO:0002181 ... P60405 25306919
    68 4w2g:BD (2.55) BS10 MG ? GO:0002181 ... P60405 25306919
    69 4w2g:BD (2.55) BS11 MG ? GO:0002181 ... P60405 25306919
    70 4w2g:BD (2.55) BS12 MG ? GO:0002181 ... P60405 25306919
    71 4w2g:BD (2.55) BS13 MG ? GO:0002181 ... P60405 25306919
    72 4w2g:BE (2.55) BS01 rna ? GO:0003735 ... Q5SHN8 25306919
    73 4w2g:BE (2.55) BS02 MG ? GO:0003735 ... Q5SHN8 25306919
    74 4w2g:BE (2.55) BS03 MG ? GO:0003735 ... Q5SHN8 25306919
    75 4w2g:BE (2.55) BS04 MG ? GO:0003735 ... Q5SHN8 25306919
    76 4w2g:BE (2.55) BS05 MG ? GO:0003735 ... Q5SHN8 25306919
    77 4w2g:BF (2.55) BS01 rna ? GO:0003735 ... Q5SHN9 25306919
    78 4w2g:BF (2.55) BS02 MG ? GO:0003735 ... Q5SHN9 25306919
    79 4w2g:BF (2.55) BS03 MG ? GO:0003735 ... Q5SHN9 25306919
    80 4w2g:BF (2.55) BS04 MG ? GO:0003735 ... Q5SHN9 25306919
    81 4w2g:BF (2.55) BS05 MG ? GO:0003735 ... Q5SHN9 25306919
    82 4w2g:BF (2.55) BS06 MG ? GO:0003735 ... Q5SHN9 25306919
    83 4w2g:BF (2.55) BS07 MG ? GO:0003735 ... Q5SHN9 25306919
    84 4w2g:BF (2.55) BS08 MG ? GO:0003735 ... Q5SHN9 25306919
    85 4w2g:BF (2.55) BS09 MG ? GO:0003735 ... Q5SHN9 25306919
    86 4w2g:BF (2.55) BS10 MG ? GO:0003735 ... Q5SHN9 25306919
    87 4w2g:BG (2.55) BS01 rna ? GO:0000049 ... Q5SHQ0 25306919
    88 4w2g:BG (2.55) BS02 rna ? GO:0000049 ... Q5SHQ0 25306919
    89 4w2g:BG (2.55) BS03 rna ? GO:0000049 ... Q5SHQ0 25306919
    90 4w2g:BG (2.55) BS04 MG ? GO:0000049 ... Q5SHQ0 25306919
    91 4w2g:BH (2.55) BS01 rna N/A GO:0003735 ... N/A 25306919
    92 4w2g:BI (2.55) BS01 rna ? GO:0003735 ... Q5SLQ1 25306919
    93 4w2g:BN (2.55) BS01 rna ? GO:0003729 ... P60488 25306919
    94 4w2g:BN (2.55) BS02 MG ? GO:0003729 ... P60488 25306919
    95 4w2g:BN (2.55) BS03 MG ? GO:0003729 ... P60488 25306919
    96 4w2g:BN (2.55) BS04 MG ? GO:0003729 ... P60488 25306919
    97 4w2g:BN (2.55) BS05 MG ? GO:0003729 ... P60488 25306919
    98 4w2g:BO (2.55) BS01 rna ? GO:0003735 ... Q5SHP8 25306919
    99 4w2g:BO (2.55) BS02 rna ? GO:0003735 ... Q5SHP8 25306919
    100 4w2g:BP (2.55) BS01 rna ? GO:0003735 ... Q5SHQ7 25306919
    101 4w2g:BP (2.55) BS02 MG ? GO:0003735 ... Q5SHQ7 25306919
    102 4w2g:BP (2.55) BS03 MG ? GO:0003735 ... Q5SHQ7 25306919
    103 4w2g:BQ (2.55) BS01 rna ? GO:0000049 ... P60489 25306919
    104 4w2g:BQ (2.55) BS02 rna ? GO:0000049 ... P60489 25306919
    105 4w2g:BQ (2.55) BS03 rna ? GO:0000049 ... P60489 25306919
    106 4w2g:BQ (2.55) BS04 MG ? GO:0000049 ... P60489 25306919
    107 4w2g:BQ (2.55) BS05 MG ? GO:0000049 ... P60489 25306919
    108 4w2g:BQ (2.55) BS06 MG ? GO:0000049 ... P60489 25306919
    109 4w2g:BQ (2.55) BS07 MG ? GO:0000049 ... P60489 25306919
    110 4w2g:BR (2.55) BS01 rna ? GO:0003735 ... Q9Z9H5 25306919
    111 4w2g:BR (2.55) BS02 MG ? GO:0003735 ... Q9Z9H5 25306919
    112 4w2g:BR (2.55) BS03 MG ? GO:0003735 ... Q9Z9H5 25306919
    113 4w2g:BS (2.55) BS01 rna ? GO:0003735 ... Q5SHQ4 25306919
    114 4w2g:BS (2.55) BS02 rna ? GO:0003735 ... Q5SHQ4 25306919
    115 4w2g:BT (2.55) BS01 rna ? GO:0003735 ... P60490 25306919
    116 4w2g:BT (2.55) BS02 rna ? GO:0003735 ... P60490 25306919
    117 4w2g:BU (2.55) BS01 rna ? GO:0000027 ... P60491 25306919
    118 4w2g:BU (2.55) BS02 MG ? GO:0000027 ... P60491 25306919
    119 4w2g:BU (2.55) BS03 MG ? GO:0000027 ... P60491 25306919
    120 4w2g:BU (2.55) BS04 MG ? GO:0000027 ... P60491 25306919
    121 4w2g:BU (2.55) BS05 MG ? GO:0000027 ... P60491 25306919
    122 4w2g:BU (2.55) BS06 MG ? GO:0000027 ... P60491 25306919
    123 4w2g:BU (2.55) BS07 MG ? GO:0000027 ... P60491 25306919
    124 4w2g:BU (2.55) BS08 MG ? GO:0000027 ... P60491 25306919
    125 4w2g:BU (2.55) BS09 MG ? GO:0000027 ... P60491 25306919
    126 4w2g:BV (2.55) BS01 rna ? GO:0003723 ... P60492 25306919
    127 4w2g:BV (2.55) BS02 MG ? GO:0003723 ... P60492 25306919
    128 4w2g:BV (2.55) BS03 MG ? GO:0003723 ... P60492 25306919
    129 4w2g:BV (2.55) BS04 MG ? GO:0003723 ... P60492 25306919
    130 4w2g:BV (2.55) BS05 MG ? GO:0003723 ... P60492 25306919
    131 4w2g:BW (2.55) BS01 rna ? GO:0003735 ... Q5SHP3 25306919
    132 4w2g:BW (2.55) BS02 MG ? GO:0003735 ... Q5SHP3 25306919
    133 4w2g:BW (2.55) BS03 MG ? GO:0003735 ... Q5SHP3 25306919
    134 4w2g:BX (2.55) BS01 rna ? GO:0000027 ... Q5SHP0 25306919
    135 4w2g:BX (2.55) BS02 MG ? GO:0000027 ... Q5SHP0 25306919
    136 4w2g:BX (2.55) BS03 MG ? GO:0000027 ... Q5SHP0 25306919
    137 4w2g:BY (2.55) BS01 rna ? GO:0003723 ... Q5SHP9 25306919
    138 4w2g:BY (2.55) BS02 MG ? GO:0003723 ... Q5SHP9 25306919
    139 4w2g:BY (2.55) BS03 ZN ? GO:0003723 ... Q5SHP9 25306919
    140 4w2g:BZ (2.55) BS01 rna ? GO:0003723 ... Q5SHZ1 25306919
    141 4w2g:BZ (2.55) BS02 rna ? GO:0003723 ... Q5SHZ1 25306919
    142 4w2g:CB (2.55) BS01 rna ? GO:0003735 ... P80371 25306919
    143 4w2g:CC (2.55) BS01 rna ? GO:0003676 ... P80372 25306919
    144 4w2g:CD (2.55) BS01 rna ? GO:0003723 ... P80373 25306919
    145 4w2g:CD (2.55) BS02 SF4 ? GO:0003723 ... P80373 25306919
    146 4w2g:CE (2.55) BS01 rna ? GO:0003723 ... Q5SHQ5 25306919
    147 4w2g:CE (2.55) BS02 MG ? GO:0003723 ... Q5SHQ5 25306919
    148 4w2g:CF (2.55) BS01 rna ? GO:0003735 ... Q5SLP8 25306919
    149 4w2g:CF (2.55) BS02 MG ? GO:0003735 ... Q5SLP8 25306919
    150 4w2g:CG (2.55) BS01 rna ? GO:0000028 ... P17291 25306919
    151 4w2g:CG (2.55) BS02 rna ? GO:0000028 ... P17291 25306919
    152 4w2g:CH (2.55) BS01 rna N/A GO:0003735 ... N/A 25306919
    153 4w2g:CI (2.55) BS01 rna ? GO:0000049 ... P80374 25306919
    154 4w2g:CI (2.55) BS02 rna ? GO:0000049 ... P80374 25306919
    155 4w2g:CJ (2.55) BS01 rna ? GO:0000049 ... Q5SHN7 25306919
    156 4w2g:CK (2.55) BS01 rna ? GO:0003735 ... P80376 25306919
    157 4w2g:CK (2.55) BS02 MG ? GO:0003735 ... P80376 25306919
    158 4w2g:CL (2.55) BS01 rna ? GO:0000049 ... Q5SHN3 25306919
    159 4w2g:CL (2.55) BS02 MG ? GO:0000049 ... Q5SHN3 25306919
    160 4w2g:CM (2.55) BS01 rna ? GO:0000049 ... P80377 25306919
    161 4w2g:CM (2.55) BS02 rna ? GO:0000049 ... P80377 25306919
    162 4w2g:CM (2.55) BS03 rna ? GO:0000049 ... P80377 25306919
    163 4w2g:CN (2.55) BS01 rna N/A GO:0003735 ... N/A 25306919
    164 4w2g:CN (2.55) BS02 ZN N/A GO:0003735 ... N/A 25306919
    165 4w2g:CO (2.55) BS01 rna ? GO:0003735 ... Q5SJ76 25306919
    166 4w2g:CO (2.55) BS02 rna ? GO:0003735 ... Q5SJ76 25306919
    167 4w2g:CP (2.55) BS01 rna ? GO:0003735 ... Q5SJH3 25306919
    168 4w2g:CQ (2.55) BS01 rna N/A GO:0003735 ... N/A 25306919
    169 4w2g:CR (2.55) BS01 rna ? GO:0003735 ... Q5SLQ0 25306919
    170 4w2g:CS (2.55) BS01 rna ? GO:0000028 ... Q5SHP2 25306919
    171 4w2g:CT (2.55) BS01 rna ? GO:0003723 ... P80380 25306919
    172 4w2g:CT (2.55) BS02 MG ? GO:0003723 ... P80380 25306919
    173 4w2g:D0 (2.55) BS01 rna ? GO:0003735 ... P60493 25306919
    174 4w2g:D0 (2.55) BS02 rna ? GO:0003735 ... P60493 25306919
    175 4w2g:D1 (2.55) BS01 rna ? GO:0003735 ... P60494 25306919
    176 4w2g:D1 (2.55) BS02 rna ? GO:0003735 ... P60494 25306919
    177 4w2g:D2 (2.55) BS01 rna ? GO:0003735 ... Q5SHP6 25306919
    178 4w2g:D3 (2.55) BS01 rna ? GO:0003735 ... Q5SHQ6 25306919
    179 4w2g:D3 (2.55) BS02 rna ? GO:0003735 ... Q5SHQ6 25306919
    180 4w2g:D3 (2.55) BS03 MG ? GO:0003735 ... Q5SHQ6 25306919
    181 4w2g:D4 (2.55) BS01 rna ? GO:0003735 ... Q5SJE1 25306919
    182 4w2g:D4 (2.55) BS02 ZN ? GO:0003735 ... Q5SJE1 25306919
    183 4w2g:D5 (2.55) BS01 rna ? GO:0003735 ... P80339 25306919
    184 4w2g:D5 (2.55) BS02 ZN ? GO:0003735 ... P80339 25306919
    185 4w2g:D6 (2.55) BS01 rna ? GO:0000049 ... P35871 25306919
    186 4w2g:D6 (2.55) BS02 ZN ? GO:0000049 ... P35871 25306919
    187 4w2g:D7 (2.55) BS01 rna ? GO:0003735 ... P80340 25306919
    188 4w2g:D7 (2.55) BS02 MG ? GO:0003735 ... P80340 25306919
    189 4w2g:D7 (2.55) BS03 MG ? GO:0003735 ... P80340 25306919
    190 4w2g:D8 (2.55) BS01 rna ? GO:0003735 ... Q5SKU1 25306919
    191 4w2g:D9 (2.55) BS01 rna ? GO:0003735 ... Q5SHR2 25306919
    192 4w2g:D9 (2.55) BS02 ZN ? GO:0003735 ... Q5SHR2 25306919
    193 4w2g:DD (2.55) BS01 rna ? GO:0002181 ... P60405 25306919
    194 4w2g:DD (2.55) BS02 rna ? GO:0002181 ... P60405 25306919
    195 4w2g:DD (2.55) BS03 MG ? GO:0002181 ... P60405 25306919
    196 4w2g:DD (2.55) BS04 MG ? GO:0002181 ... P60405 25306919
    197 4w2g:DD (2.55) BS05 MG ? GO:0002181 ... P60405 25306919
    198 4w2g:DD (2.55) BS06 MG ? GO:0002181 ... P60405 25306919
    199 4w2g:DD (2.55) BS07 MG ? GO:0002181 ... P60405 25306919
    200 4w2g:DD (2.55) BS08 MG ? GO:0002181 ... P60405 25306919
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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